Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007101

Physical Location & Seq

Genomic Coordinates Reverse (-)

3912049 .. 3916889

Gene Structure 4841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42058

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGCAAATGGAGAAGTGCAGGGACCTTATTGTCCATGGGGGCCTGGTAAGAACCTTGAAAGAATAGAAGTGAATGATCCTAATGAGGTTTCTGTGGTAATACCTAAAAGAAGAGGTGGTCTACGCCATTCTGTTTCGGCCCAAGATTTGAGATATAGGGATATAGAAAAGGAGAAACATGATGGCCAATCTCCTAGAGGAGTTTTGGAAGCTTGCGTGGAAAGCTTTGAATCTGAAACTAGCGTTTCTGAAAACAGCAAACCAGAAGCAGAAGCTTCTTGTCCAGATTCAAAGCCTCAATCTCACTGGTGTAGATTTTTTAAGCTGTGGAGTAAAAGATCAATCAAGCAGCACTTCTTCCCTCTTGGTGTATCCAAGATGTCAATAAAAAGAAGGAGCAACAGTACAAAAGACAATTCAGTACTGACTAATATCTACAACTTCAAGTCTCCATTAAAGAGTTTCTCCTTCTCTGCACTCCAAACCGCCACCAATAATTTCAACAATGAAAATATAATTGGAAAGGGTGGCTATTCCGAAGTATATAGGGGGACTTTAAAGGATGGGCAACTAGTTGCAGTAAAGCGGCTGACTAATGGAACATCCGATGAGAAAACTGCAGGCTTTCTATCTGAACTTGGCATTATAGCTCATGTAGATCATCCTAATACTGCTAAGCTAATTGGCTGTTGCGTTGAAAAAGGAATGCACCTTGTTTTTCAATTATCTCCACTTGGGAGTTTAGGTTCTCTCCTGCATGGTCCAAAGAATTATATTCTTGATTGGAGTAAAAGGTATAAAATTGCATTAGGGGCAGCAGATGGTCTGCTGTATCTTCATGATAGTTGTCAGAGGCGAATCATCCATAGAGATATCAAGGCTGATAATATTCTACTTACAGAGGATTTTGTGCCTCAGATATGTGACTTTGGGCTTGCAAAGTGGCTACCGAAACAATGGACTCATCACAACGTCTCTAAGTTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGGATTGTAGATGAAAAGACTGATGTTTATTCTTTTGGAGTCCTACTCTTGGAGCTTATAACTGGGCGTCCAGCTTTGGATAATCTTCAGCAAAGCCTTGTAATTTGGGCAAAGCCCTTGCTTAATAAAAATGACGTCAAGGAGCTTGTTGATCCTTCTATTGGTGACAACTATGACAGCACAGAGATGGATCATATGATTTTGACTGCATCTTTATGCATAGAGCAGTCTTCTATTCTACGTCCTCGCATGAGTCAGGTTGTGGTACTGCTAAGAGGTGACGAGTATGTCTCCAAGTGTGCAAAAGAAACGAAAAGGAGGTCCCTGCTGAGAACATACTCGGAAGAACTGATGGATGCACAAGAATATAACTCAACAAAGTATCTGAGGGATCTCCGCCGACACAAGCAGATTGCTTTTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

484

Amino Acids

54.78

Weight (kDa)

8.37

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	167 - 373	2.9e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	170 - 377	7.7e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05140 AT3G05140
fragaria_vesca	FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990
malus_domestica	MD04G1211700.v1.1 MD12G1226600.v1.1
prunus_persica	Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1
pyrus_communis	pycom04g18770 pycom12g21110
rosa_chinensis	RchiOBHm_Chr3g0453501
rosa_laevigata	RLG00000025508
rosa_multiflora	Rmu_sc0000510.1_g000014
rosa_roxburghii	Rroxscaffold_6G00430470
rosa_rugosa	Rorug02G0649600 Rorug02G0649600
rosa_samantha	Rh3AG052500 Rh3BG053900 Rh3CG053300 Rh3DG054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1085
AasI	GACNNNNNNGTC	2 cut(s)	30, 1313
AatII	GACGTC	1 cut(s)	1164
AccI	GTMKAC	1 cut(s)	121
AciI	CCGC	3 cut(s)	486, 586, 1423
AclWI	GGATC	4 cut(s)	71, 1172, 1224, 1425
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	1097
AcyI	GRCGYC	2 cut(s)	1093, 1161
AfaI	GTAC	3 cut(s)	406, 423, 1293
AfiI	CCNNNNNNNGG	2 cut(s)	1075, 1187
AgsI	TTSAA	7 cut(s)	59, 230, 291, 445, 502, 698, 722
AhlI	ACTAGT	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AloI	GAACNNNNNNTCC	2 cut(s)	730, 762
AluBI	AGCT	9 cut(s)	212, 225, 275, 325, 650, 679, 1081, 1100, 1171
AluI	AGCT	9 cut(s)	212, 225, 275, 325, 650, 679, 1081, 1100, 1171
Alw26I	GTCTC	3 cut(s)	453, 979, 1321
AlwI	GGATC	4 cut(s)	71, 1172, 1224, 1425
AoxI	GGCC	3 cut(s)	41, 138, 184
ApeKI	GCWGC	2 cut(s)	349, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	1331, 1363
AspS9I	GGNCC	5 cut(s)	23, 41, 139, 761, 1347
AsuHPI	GGTGA	2 cut(s)	1202, 1316
AvaII	GGWCC	3 cut(s)	23, 761, 1347
BaeGI	GKGCMC	1 cut(s)	992
BalI	TGGCCA	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	1248
BbvI	GCAGC	2 cut(s)	361, 827
BccI	CCATC	5 cut(s)	176, 557, 815, 1207, 1372
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	453, 979, 1321
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	3 cut(s)	195, 240, 572
BfmI	CTRYAG	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	3 cut(s)	350, 587, 816
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	3 cut(s)	351, 588, 817
BmcAI	AGTACT	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	3 cut(s)	23, 761, 1347
BmgT120I	GGNCC	5 cut(s)	23, 41, 139, 761, 1347
BmiI	GGNNCC	3 cut(s)	24, 42, 1349
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	1098
BmsI	GCATC	2 cut(s)	1244, 1372
BmuI	ACTGGG	1 cut(s)	1098
BpiI	GAAGAC	1 cut(s)	1248
BplI	GAGNNNNNCTC	4 cut(s)	1056, 1088, 1301, 1333
Bpu1102I	GCTNAGC	1 cut(s)	675
BsaHI	GRCGYC	2 cut(s)	1093, 1161
BsaJI	CCNNGG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	4 cut(s)	388, 418, 730, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	1075, 1187
Bse1I	ACTGG	2 cut(s)	311, 1093
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	5 cut(s)	568, 602, 661, 861, 1387
BseLI	CCNNNNNNNGG	2 cut(s)	1075, 1187
BseMII	CTCAG	3 cut(s)	929, 1346, 1403
BseNI	ACTGG	2 cut(s)	311, 1093
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	361, 827
BsgI	GTGCAG	2 cut(s)	38, 459
BshFI	GGCC	3 cut(s)	43, 140, 186
BslFI	GGGAC	3 cut(s)	36, 565, 1333
BslI	CCNNNNNNNGG	2 cut(s)	1075, 1187
BsmAI	GTCTC	3 cut(s)	453, 979, 1321
BsmBI	CGTCTC	1 cut(s)	979
BsmFI	GGGAC	3 cut(s)	36, 565, 1333
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	3 cut(s)	43, 140, 186
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp143I	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	3 cut(s)	486, 586, 1423
BspANI	GGCC	3 cut(s)	43, 140, 186
BspCNI	CTCAG	3 cut(s)	928, 1347, 1404
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	3 cut(s)	24, 42, 1349
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	4 cut(s)	71, 1172, 1224, 1425
BsrI	ACTGG	2 cut(s)	311, 1093
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
BssNI	GRCGYC	2 cut(s)	1093, 1161
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	106
BstACI	GRCGYC	2 cut(s)	1093, 1161
BstC8I	GCNNGC	3 cut(s)	214, 622, 936
BstDEI	CTNAG	6 cut(s)	675, 915, 978, 1298, 1355, 1412
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	5 cut(s)	568, 602, 661, 861, 1387
BstKTI	GATC	6 cut(s)	79, 341, 661, 1180, 1219, 1420
BstMAI	GTCTC	3 cut(s)	453, 979, 1321
BstMBI	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 812
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	992
BstV1I	GCAGC	2 cut(s)	361, 827
BstV2I	GAAGAC	1 cut(s)	1248
BstX2I	RGATCY	1 cut(s)	1417
BstYI	RGATCY	1 cut(s)	1417
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	43, 140, 186
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	5 cut(s)	568, 602, 661, 861, 1387
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	214, 622, 936
CciI	TCATGA	1 cut(s)	838
Cfr13I	GGNCC	5 cut(s)	23, 41, 139, 761, 1347
CseI	GACGC	1 cut(s)	1082
Csp6I	GTAC	3 cut(s)	405, 422, 1292
CviAII	CATG	8 cut(s)	36, 179, 653, 758, 839, 1021, 1025, 1276
CviQI	GTAC	3 cut(s)	405, 422, 1292
DdeI	CTNAG	6 cut(s)	675, 915, 978, 1298, 1355, 1412
DpnI	GATC	6 cut(s)	78, 340, 660, 1179, 1218, 1419
DpnII	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
DraI	TTTAAA	1 cut(s)	558
DrdI	GACNNNNNNGTC	2 cut(s)	30, 1313
DseDI	GACNNNNNNGTC	2 cut(s)	30, 1313
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	1412
Eco130I	CCWWGG	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	874
Eco47I	GGWCC	3 cut(s)	23, 761, 1347
Eco57I	CTGAAG	1 cut(s)	1097
EcoO109I	RGGNCCY	3 cut(s)	23, 41, 1347
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	874
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	2 cut(s)	1026, 1247
ErhI	CCWWGG	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	979
FaeI	CATG	8 cut(s)	39, 182, 656, 761, 842, 1024, 1028, 1279
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	3 cut(s)	36, 565, 1333
FatI	CATG	8 cut(s)	35, 178, 652, 757, 838, 1020, 1024, 1275
FauNDI	CATATG	1 cut(s)	1221
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	350, 587, 816
FokI	GGATG	5 cut(s)	575, 589, 648, 848, 1394
Fsp4HI	GCNGC	3 cut(s)	350, 587, 816
FspBI	CTAG	3 cut(s)	195, 240, 572
GluI	GCNGC	3 cut(s)	350, 587, 816
HaeIII	GGCC	3 cut(s)	43, 140, 186
HgaI	GACGC	1 cut(s)	1082
Hin1I	GRCGYC	2 cut(s)	1093, 1161
Hin1II	CATG	8 cut(s)	39, 182, 656, 761, 842, 1024, 1028, 1279
HindIII	AAGCTT	3 cut(s)	210, 223, 273
HinfI	GANTC	6 cut(s)	230, 287, 858, 961, 1065, 1279
HphI	GGTGA	2 cut(s)	1202, 1316
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	9 cut(s)	235, 250, 538, 607, 634, 852, 918, 1369, 1413
Hpy188III	TCNNGA	4 cut(s)	284, 779, 839, 1010
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	387, 478, 1191
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	3 cut(s)	972, 1161, 1267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 812
HpyF3I	CTNAG	6 cut(s)	675, 915, 978, 1298, 1355, 1412
HpySE526I	ACGT	3 cut(s)	972, 1161, 1267
Hsp92I	GRCGYC	2 cut(s)	1093, 1161
Hsp92II	CATG	8 cut(s)	39, 182, 656, 761, 842, 1024, 1028, 1279
Kzo9I	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
LmnI	GCTCC	4 cut(s)	396, 1012, 1078, 1168
Lsp1109I	GCAGC	2 cut(s)	361, 827
LweI	GCATC	2 cut(s)	1244, 1372
MaeI	CTAG	3 cut(s)	195, 240, 572
MaeII	ACGT	3 cut(s)	972, 1161, 1267
MaeIII	GTNAC	3 cut(s)	923, 1190, 1304
MalI	GATC	6 cut(s)	78, 340, 660, 1179, 1218, 1419
MboI	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
MboII	GAAGA	6 cut(s)	123, 349, 827, 1103, 1248, 1382
MflI	RGATCY	1 cut(s)	1417
MhlI	GDGCHC	1 cut(s)	992
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	8 cut(s)	415, 496, 516, 681, 722, 769, 801, 1128
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	3 cut(s)	955, 1074, 1288
Mox20I	TGGCCA	1 cut(s)	186
Mph1103I	ATGCAT	2 cut(s)	1026, 1247
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	4 cut(s)	321, 455, 557, 1149
MslI	CAYNNNNRTG	2 cut(s)	1211, 1240
Msp20I	TGGCCA	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	222, 812
NcoI	CCATGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	1221
NdeII	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
NlaIII	CATG	8 cut(s)	39, 182, 656, 761, 842, 1024, 1028, 1279
NlaIV	GGNNCC	3 cut(s)	24, 42, 1349
NmuCI	GTSAC	3 cut(s)	923, 1190, 1304
NsiI	ATGCAT	2 cut(s)	1026, 1247
PagI	TCATGA	1 cut(s)	838
PctI	GAATGC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	230, 287, 858
PkrI	GCNGC	3 cut(s)	351, 588, 817
PleI	GAGTC	3 cut(s)	955, 1073, 1287
PpsI	GAGTC	3 cut(s)	955, 1073, 1287
PpuMI	RGGWCCY	2 cut(s)	23, 1347
PsiI	TTATAA	1 cut(s)	1085
Psp5II	RGGWCCY	2 cut(s)	23, 1347
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	3 cut(s)	24, 42, 1349
PspPI	GGNCC	5 cut(s)	23, 41, 139, 761, 1347
PspPPI	RGGWCCY	2 cut(s)	23, 1347
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	1417
RsaI	GTAC	3 cut(s)	406, 423, 1293
RsaNI	GTAC	3 cut(s)	405, 422, 1292
RseI	CAYNNNNRTG	2 cut(s)	1211, 1240
SaqAI	TTAA	4 cut(s)	321, 455, 557, 1149
SatI	GCNGC	3 cut(s)	350, 587, 816
Sau3AI	GATC	6 cut(s)	76, 338, 658, 1177, 1216, 1417
Sau96I	GGNCC	5 cut(s)	23, 41, 139, 761, 1347
ScaI	AGTACT	1 cut(s)	423
SchI	GAGTC	3 cut(s)	955, 1074, 1288
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	992
SfaNI	GCATC	2 cut(s)	1244, 1372
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	3 cut(s)	23, 761, 1347
SmiMI	CAYNNNNRTG	2 cut(s)	1211, 1240
SpeI	ACTAGT	1 cut(s)	571
Sse9I	AATT	8 cut(s)	415, 496, 516, 681, 722, 769, 801, 1128
SsiI	CCGC	3 cut(s)	486, 586, 1423
SspI	AATATT	2 cut(s)	889, 1016
SspMI	CTAG	3 cut(s)	195, 240, 572
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	3 cut(s)	975, 1164, 1270
TasI	AATT	8 cut(s)	415, 496, 516, 681, 722, 769, 801, 1128
TatI	WGTACW	2 cut(s)	404, 421
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	3 cut(s)	230, 287, 858
Tru1I	TTAA	4 cut(s)	321, 455, 557, 1149
Tru9I	TTAA	4 cut(s)	321, 455, 557, 1149
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	3 cut(s)	923, 1190, 1304
TseI	GCWGC	2 cut(s)	349, 815
Tsp45I	GTSAC	3 cut(s)	923, 1190, 1304
TspDTI	ATGAA	4 cut(s)	522, 827, 1009, 1053
TspRI	CASTG	1 cut(s)	311
VpaK11BI	GGWCC	3 cut(s)	23, 761, 1347
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	3 cut(s)	195, 240, 572
ZraI	GACGTC	1 cut(s)	1162
ZrmI	AGTACT	1 cut(s)	423
Zsp2I	ATGCAT	2 cut(s)	1026, 1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.