RLG00000025508
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
46308862 .. 46312595
3734 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025508

Sequence Viewer

Length: 1446 bp
ATGGCAAATGGAGAAGTGCAGGGACCTTATTGTCCATGGGGGCCGGGTAAGAACCTTGAAAGAATAGAAGTTAATGATCCTAATGAGGTTTCTGTGGTAATACCTAAAAGAAGAGGTGGTCTACGCCATTCCGTTTCGGCCCAAGATTTGAGATATAGGGATATAGAAAAGGAGAAACATGATGGCCAATCTCCTAGAGGAGTTTTGGAAGCTTGCGTGGAAAGCTTTGAATCTGAAACTAGCGTTTCTGAAAACAGCAAACCAGAAGCAGAAGCTTCTTGCCCAGATTCGAAGTCACAATCTCACTGGAGTAGATTTTTTAAGCTATGGAGTAAAAGATCAATCAAGCAGCACTTCTTCCCTCTTGGTGTATCCAAGATGTCAATAAAAAGGAGGAGCAACAGTACAAAAGACAATTCAGTACTGACTAATATCTACAACTTCAAGTGTCCATTAAAGAGTTTCTCCTTCTCTGCACTCCAAACCGCCACCAATAATTTCAACAATGAAAATATAATTGGAAAGGGTGGCTATTCCGAAGTATATAGGGGGACTTTAAAGGATGGGCAACTAGTAGCAGTAAAGCGGCTGACTAATGGGACATCTGATGAGAAAACTGCAGGCTTTCTATCTGAACTTGGCATTATAGCTCATGTAGATCATCCTAATACTGCTAAGCTAATTGGCTGTTGCGTTGAAAAAGGAATGCACCTTGTTTTTCAATTATCTCCACTTGGGAGTTTAGGATCTCTCCTGCATGGTCCAAAGAATGATATTCTTGATTGGAGTAAAAGGTATAAAATTGCTTTAGGGGCAGCAGATGGTCTGCTGTATCTTCATGATAGTTGTCAGAGGCGAATCATCCATAGAGATATCAAGGCTGATAATATTCTACTTACAGAGGAATTTATATGTGACTTTGGGCTTGCAAAGTGGCTACCGAAACAATGGACTCATCACAACGTCTCTAAGTTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGGATTGTAGATGAAAAGACTGATGTTTATTCTTTTGGAGTCCTACTGTTGGAGCTTATAACTGGGCGTCCAGCTTTGGATAATCTTCAGCAAAGCCTTGTAATTTGGGCAAAGCCCTTGCTTAATAAAAATGACGTCAAGGAGCTTGTTGATCCTTCTATTGGTGACAAGTATGACAGCACAGAGATGGATCATATGATTTTGACTGCATCTTTATGCATCGAGCAGTCTTCTATTCTACGTCCTCGCATGAGTCAGGTTGTGGTACTGCTAAGAGGTGACGAGTATGTCTCCAAGTGTGCAAAAGAAACGAAAAGTAGGTCCCTGCTGAGAACATACTCGGAAGAACTGATGGATGCACAAGAATATAACTCAACAAAGTATCTGAGGGATCTCCGCCGACACAAGCAGATTGCTTTTGACATTTGA

Protein Analysis

482

Amino Acids

54.36

Weight (kDa)

8.19

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 167 - 370 4e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 170 - 374 1.8e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AasI GACNNNNNNGTC 2 cut(s) 30, 1304
AatII GACGTC 1 cut(s) 1155
AccI GTMKAC 1 cut(s) 121
AciI CCGC 3 cut(s) 486, 586, 1414
AclWI GGATC 5 cut(s) 71, 754, 1163, 1215, 1416
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 1 cut(s) 1088
AcyI GRCGYC 2 cut(s) 1084, 1152
AfaI GTAC 3 cut(s) 406, 423, 1284
AfiI CCNNNNNNNGG 2 cut(s) 1066, 1178
AgsI TTSAA 6 cut(s) 59, 230, 445, 502, 698, 722
AhlI ACTAGT 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AluBI AGCT 9 cut(s) 212, 225, 275, 325, 650, 679, 1072, 1091, 1162
AluI AGCT 9 cut(s) 212, 225, 275, 325, 650, 679, 1072, 1091, 1162
Alw26I GTCTC 2 cut(s) 970, 1312
AlwI GGATC 5 cut(s) 71, 754, 1163, 1215, 1416
AoxI GGCC 3 cut(s) 41, 138, 184
ApeKI GCWGC 2 cut(s) 349, 815
ApoI RAATTY 1 cut(s) 905
ArsI GACNNNNNNTTYG 2 cut(s) 1322, 1354
AspS9I GGNCC 5 cut(s) 23, 41, 139, 761, 1338
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 1193, 1307
AsuII TTCGAA 1 cut(s) 290
AvaII GGWCC 3 cut(s) 23, 761, 1338
BaeGI GKGCMC 1 cut(s) 983
BalI TGGCCA 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 1239
BbvI GCAGC 2 cut(s) 361, 827
BccI CCATC 5 cut(s) 176, 557, 815, 1198, 1363
BciVI GTATCC 1 cut(s) 382
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 970, 1312
BcuI ACTAGT 1 cut(s) 571
BfaI CTAG 3 cut(s) 195, 240, 572
BfmI CTRYAG 1 cut(s) 618
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 3 cut(s) 350, 587, 816
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 3 cut(s) 351, 588, 817
BmcAI AGTACT 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 3 cut(s) 23, 761, 1338
BmgT120I GGNCC 5 cut(s) 23, 41, 139, 761, 1338
BmiI GGNNCC 3 cut(s) 24, 42, 1340
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 1089
BmsI GCATC 3 cut(s) 1235, 1245, 1363
BmuI ACTGGG 1 cut(s) 1089
BpiI GAAGAC 1 cut(s) 1239
BplI GAGNNNNNCTC 2 cut(s) 1292, 1324
BpmI CTGGAG 1 cut(s) 328
Bpu1102I GCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 45
BsaHI GRCGYC 2 cut(s) 1084, 1152
BsaJI CCNNGG 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 1066, 1178
Bse1I ACTGG 2 cut(s) 311, 1084
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 4 cut(s) 568, 661, 861, 1378
BseLI CCNNNNNNNGG 2 cut(s) 1066, 1178
BseMII CTCAG 2 cut(s) 1337, 1394
BseNI ACTGG 2 cut(s) 311, 1084
BseRI GAGGAG 2 cut(s) 213, 409
BseSI GKGCMC 1 cut(s) 983
BseXI GCAGC 2 cut(s) 361, 827
BsgI GTGCAG 2 cut(s) 38, 459
BshFI GGCC 3 cut(s) 43, 140, 186
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 4 cut(s) 36, 565, 613, 1324
BslI CCNNNNNNNGG 2 cut(s) 1066, 1178
BsmAI GTCTC 2 cut(s) 970, 1312
BsmBI CGTCTC 1 cut(s) 970
BsmFI GGGAC 4 cut(s) 36, 565, 613, 1324
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 3 cut(s) 43, 140, 186
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 983
Bsp143I GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
Bsp1720I GCTNAGC 1 cut(s) 675
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 3 cut(s) 486, 586, 1414
BspANI GGCC 3 cut(s) 43, 140, 186
BspCNI CTCAG 2 cut(s) 1338, 1395
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 3 cut(s) 24, 42, 1340
BspMAI CTGCAG 1 cut(s) 622
BspPI GGATC 5 cut(s) 71, 754, 1163, 1215, 1416
BspT104I TTCGAA 1 cut(s) 290
BsrI ACTGG 2 cut(s) 311, 1084
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
BssNI GRCGYC 2 cut(s) 1084, 1152
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 404, 1065
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 2 cut(s) 1084, 1152
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 214, 622, 927
BstDEI CTNAG 5 cut(s) 675, 969, 1289, 1346, 1403
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 4 cut(s) 568, 661, 861, 1378
BstKTI GATC 7 cut(s) 79, 341, 661, 749, 1171, 1210, 1411
BstMAI GTCTC 2 cut(s) 970, 1312
BstMBI GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
BstMWI GCNNNNNNNGC 2 cut(s) 222, 812
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 1 cut(s) 983
BstV1I GCAGC 2 cut(s) 361, 827
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 2 cut(s) 746, 1408
BstYI RGATCY 2 cut(s) 746, 1408
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 3 cut(s) 43, 140, 186
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 4 cut(s) 568, 661, 861, 1378
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 3 cut(s) 214, 622, 927
CciI TCATGA 1 cut(s) 838
Cfr13I GGNCC 5 cut(s) 23, 41, 139, 761, 1338
CseI GACGC 1 cut(s) 1073
Csp6I GTAC 3 cut(s) 405, 422, 1283
CviAII CATG 8 cut(s) 36, 179, 653, 758, 839, 1012, 1016, 1267
CviQI GTAC 3 cut(s) 405, 422, 1283
DdeI CTNAG 5 cut(s) 675, 969, 1289, 1346, 1403
DpnI GATC 7 cut(s) 78, 340, 660, 748, 1170, 1209, 1410
DpnII GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
DraI TTTAAA 1 cut(s) 558
DrdI GACNNNNNNGTC 2 cut(s) 30, 1304
DseDI GACNNNNNNGTC 2 cut(s) 30, 1304
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EciI GGCGGA 1 cut(s) 1403
Eco130I CCWWGG 1 cut(s) 35
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 3 cut(s) 23, 761, 1338
Eco57I CTGAAG 1 cut(s) 1088
EcoO109I RGGNCCY 2 cut(s) 23, 1338
EcoRV GATATC 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 35
EcoT22I ATGCAT 2 cut(s) 1017, 1238
ErhI CCWWGG 1 cut(s) 35
Esp3I CGTCTC 1 cut(s) 970
FaeI CATG 8 cut(s) 39, 182, 656, 761, 842, 1015, 1019, 1270
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 4 cut(s) 36, 565, 613, 1324
FatI CATG 8 cut(s) 35, 178, 652, 757, 838, 1011, 1015, 1266
FauNDI CATATG 1 cut(s) 1212
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 350, 587, 816
FokI GGATG 4 cut(s) 575, 648, 848, 1385
Fsp4HI GCNGC 3 cut(s) 350, 587, 816
FspBI CTAG 3 cut(s) 195, 240, 572
GluI GCNGC 3 cut(s) 350, 587, 816
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 3 cut(s) 43, 140, 186
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 1073
Hin1I GRCGYC 2 cut(s) 1084, 1152
Hin1II CATG 8 cut(s) 39, 182, 656, 761, 842, 1015, 1019, 1270
HindIII AAGCTT 3 cut(s) 210, 223, 273
HinfI GANTC 6 cut(s) 230, 287, 858, 952, 1056, 1270
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 1193, 1307
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 8 cut(s) 235, 250, 538, 607, 634, 852, 1360, 1404
Hpy188III TCNNGA 3 cut(s) 779, 839, 1001
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 478, 1182
HpyCH4III ACNGT 2 cut(s) 404, 1065
HpyCH4IV ACGT 3 cut(s) 963, 1152, 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 812
HpyF3I CTNAG 5 cut(s) 675, 969, 1289, 1346, 1403
HpySE526I ACGT 3 cut(s) 963, 1152, 1258
Hsp92I GRCGYC 2 cut(s) 1084, 1152
Hsp92II CATG 8 cut(s) 39, 182, 656, 761, 842, 1015, 1019, 1270
Kzo9I GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
LmnI GCTCC 4 cut(s) 396, 1003, 1069, 1159
Lsp1109I GCAGC 2 cut(s) 361, 827
LweI GCATC 3 cut(s) 1235, 1245, 1363
MaeI CTAG 3 cut(s) 195, 240, 572
MaeII ACGT 3 cut(s) 963, 1152, 1258
MaeIII GTNAC 4 cut(s) 294, 914, 1181, 1295
MalI GATC 7 cut(s) 78, 340, 660, 748, 1170, 1209, 1410
MboI GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
MboII GAAGA 6 cut(s) 123, 349, 827, 1094, 1239, 1373
MflI RGATCY 2 cut(s) 746, 1408
MhlI GDGCHC 1 cut(s) 983
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 8 cut(s) 415, 496, 516, 681, 722, 801, 905, 1119
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 3 cut(s) 946, 1065, 1279
MmeI TCCRAC 1 cut(s) 1047
Mox20I TGGCCA 1 cut(s) 186
Mph1103I ATGCAT 2 cut(s) 1017, 1238
MscI TGGCCA 1 cut(s) 186
MseI TTAA 5 cut(s) 72, 321, 455, 557, 1140
MslI CAYNNNNRTG 2 cut(s) 1202, 1231
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 711
MwoI GCNNNNNNNGC 2 cut(s) 222, 812
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 1212
NdeII GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
NlaIII CATG 8 cut(s) 39, 182, 656, 761, 842, 1015, 1019, 1270
NlaIV GGNNCC 3 cut(s) 24, 42, 1340
NmuCI GTSAC 4 cut(s) 294, 914, 1181, 1295
NsiI ATGCAT 2 cut(s) 1017, 1238
NspV TTCGAA 1 cut(s) 290
PagI TCATGA 1 cut(s) 838
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 230, 287, 858
PkrI GCNGC 3 cut(s) 351, 588, 817
PleI GAGTC 3 cut(s) 946, 1064, 1278
PpsI GAGTC 3 cut(s) 946, 1064, 1278
PpuMI RGGWCCY 2 cut(s) 23, 1338
PsiI TTATAA 1 cut(s) 1076
Psp5II RGGWCCY 2 cut(s) 23, 1338
PspN4I GGNNCC 3 cut(s) 24, 42, 1340
PspPI GGNCC 5 cut(s) 23, 41, 139, 761, 1338
PspPPI RGGWCCY 2 cut(s) 23, 1338
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 2 cut(s) 746, 1408
RsaI GTAC 3 cut(s) 406, 423, 1284
RsaNI GTAC 3 cut(s) 405, 422, 1283
RseI CAYNNNNRTG 2 cut(s) 1202, 1231
SaqAI TTAA 5 cut(s) 72, 321, 455, 557, 1140
SatI GCNGC 3 cut(s) 350, 587, 816
Sau3AI GATC 7 cut(s) 76, 338, 658, 746, 1168, 1207, 1408
Sau96I GGNCC 5 cut(s) 23, 41, 139, 761, 1338
ScaI AGTACT 1 cut(s) 423
SchI GAGTC 3 cut(s) 946, 1065, 1279
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 983
SfaNI GCATC 3 cut(s) 1235, 1245, 1363
SfcI CTRYAG 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 290
SinI GGWCC 3 cut(s) 23, 761, 1338
SmiMI CAYNNNNRTG 2 cut(s) 1202, 1231
SpeI ACTAGT 1 cut(s) 571
Sse9I AATT 8 cut(s) 415, 496, 516, 681, 722, 801, 905, 1119
SsiI CCGC 3 cut(s) 486, 586, 1414
SspI AATATT 2 cut(s) 889, 1007
SspMI CTAG 3 cut(s) 195, 240, 572
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 404, 1065
TaiI ACGT 3 cut(s) 966, 1155, 1261
TaqI TCGA 2 cut(s) 290, 1239
TasI AATT 8 cut(s) 415, 496, 516, 681, 722, 801, 905, 1119
TatI WGTACW 2 cut(s) 404, 421
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 3 cut(s) 230, 287, 858
Tru1I TTAA 5 cut(s) 72, 321, 455, 557, 1140
Tru9I TTAA 5 cut(s) 72, 321, 455, 557, 1140
TscAI CASTG 1 cut(s) 311
TseFI GTSAC 4 cut(s) 294, 914, 1181, 1295
TseI GCWGC 2 cut(s) 349, 815
Tsp45I GTSAC 4 cut(s) 294, 914, 1181, 1295
TspDTI ATGAA 4 cut(s) 522, 827, 1000, 1044
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 311
VpaK11BI GGWCC 3 cut(s) 23, 761, 1338
XapI RAATTY 1 cut(s) 905
XmiI GTMKAC 1 cut(s) 121
XspI CTAG 3 cut(s) 195, 240, 572
ZraI GACGTC 1 cut(s) 1153
ZrmI AGTACT 1 cut(s) 423
Zsp2I ATGCAT 2 cut(s) 1017, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.