Rroxscaffold_6G00430470
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
50593710 .. 50601446
7737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430470.1

Sequence Viewer

Length: 1563 bp
ATGGCGTTATGGCTTTATTTAATAGCGCCATCGCTCGCATTGTGGCGCTACTTGCTATTCAATAGCGCAATTGCTCCTCATCGCGGCGTTATGACGTTATTCACTAGCGTCATTACTTCTCATTGCTGCATTATGACGTTATTCATTGGCGTTATTCATCATCACCATCACTCCACGTCACGGTATTTGAGATATAGGGATATAGAAAAGGAGAAACATGATGGCCAATCTCCTAGAGGAGTTTTGGAAGCTTGCGTGGAAAGCTTTGAATCTGAAACTAGCGTTTCTGAAAACAGCAAACCAGAAGCAGAAGCTTCTTGTCCAGATTCAAAGCCTCAATCTCACTGGTGCAGATTTTTTAAGCTGTGGAGTAAAAGATCAATCAAGCAGCACTTCTTCCCTCTTGGTGTATCCAAGATGTCAATAAAAAGGAGGAGTAACAGTACAAAAGACAATTCAGTACTGAGTAATATCTACAACTTCAAGTCTCCATTAAAGAGTTTCTCCTTCTCTGCACTCCAAACCGCCACCAATAATTTCAACAATGAAAATATAATTGGAAAGGGTGGCTATTCCGAAGTATATAGGGGGACTTTAAAGGATGGGCAACTAGTAGCAGTAAAGCGGCTGACTAATGGAACATCCGATGAGAAAACTGCAGGCTTTCTATCTGAACTTGGCATTATAGCTCATGTAGATCATCCTAATACTGCTAAGCTAATTGGCTGTTGCGTTGAAAAAGGAATGCACCTTGTTTTTCAATTATCTCCACTTGGGAGTTTAGGATCTCTCCTGCATGGGGCAGCAGATGGTCTGCTGTATCTTCATGATAGTTGTCAGAGGCGAATCATCCATAGAGATATCAAGGCTGATAATGTTCTACTTACAGAGGATTTTGTGCCTCAGATATGTGACTTTGGGCTTGCAAAGTGGCTACCGAAACAGTGGACTCATCACAACGTCTCCAAGTTTGAGGGCACATTTGGGTCAGTAAGAAAACAGCTTTGTTTTACAGTTAACACAATAGTTCATTTTCTCAATCACGTAACCTTCAATGGCAGGTATTTTGCTCCTGAATATTTCATGCATGGGATTGTAGATGAAAAGACTGATGTTTATTCTTTTGGAGTCCTACTCTTGGAGCTTATAACTGGGCGTCCAGCTTTGGATAATCTTCAGCAAAGCCTTGTAATTTGGGCAAAGCCCTTGCTTAATAAAAATGACGTCAAGGAGCTTGTTGATCCTTCTATTGGTGACAACTATGACAGCACAGAGATGGATCATATGATTTTGACTGCATCTTTATGCATAGAGCAGTCTTCTATTCTACGTCCTCGCATGAGTCAGGCAAGTACAGATGCATTATGCATATCTCCTCTACAGTTGGAGTTCGTTGTGGTACTGCTAAGAGGTGACGAGTATGTCTCCAAGTGTGCAAAAGAAACGAAAAGGAGGTCCCTGCTGAGAACATACTCGGAAGAACTGATGGATGCACAAGAATATAACTCAACAAAGTATCTGAGGGATCTCCGCCGACACAAGCAGATTGCTTTTGACATTTGA

Protein Analysis

520

Amino Acids

59.0

Weight (kDa)

8.44

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 180 - 394 8.3e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 183 - 313 4.7e-22 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 350 - 397 2.3e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
AasI GACNNNNNNGTC 1 cut(s) 1421
AatII GACGTC 1 cut(s) 1227
Acc36I ACCTGC 1 cut(s) 1050
AccII CGCG 1 cut(s) 84
AciI CCGC 4 cut(s) 84, 525, 625, 1531
AclWI GGATC 4 cut(s) 793, 1235, 1287, 1533
AcoI YGGCCR 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 1160
AcyI GRCGYC 2 cut(s) 1156, 1224
AfaI GTAC 4 cut(s) 445, 462, 1354, 1401
AfiI CCNNNNNNNGG 5 cut(s) 83, 180, 799, 1138, 1250
AgsI TTSAA 8 cut(s) 61, 269, 330, 484, 541, 737, 761, 1054
AhlI ACTAGT 1 cut(s) 610
AjiI CACGTC 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
Alw26I GTCTC 3 cut(s) 492, 967, 1429
AlwI GGATC 4 cut(s) 793, 1235, 1287, 1533
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 126, 388, 803
ArsI GACNNNNNNTTYG 2 cut(s) 1439, 1471
AspLEI GCGC 3 cut(s) 28, 48, 68
AspS9I GGNCC 1 cut(s) 1455
AsuHPI GGTGA 3 cut(s) 155, 1265, 1424
AvaII GGWCC 1 cut(s) 1455
BaeGI GKGCMC 1 cut(s) 980
BalI TGGCCA 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 1311
BbvI GCAGC 3 cut(s) 113, 400, 815
BccI CCATC 7 cut(s) 37, 174, 215, 596, 803, 1270, 1480
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 492, 967, 1429
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 4 cut(s) 105, 234, 279, 611
BfmI CTRYAG 2 cut(s) 657, 1379
BfoI RGCGCY 2 cut(s) 29, 49
BfuAI ACCTGC 1 cut(s) 1050
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 5 cut(s) 85, 127, 389, 626, 804
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 5 cut(s) 86, 128, 390, 627, 805
BmcAI AGTACT 1 cut(s) 462
Bme18I GGWCC 1 cut(s) 1455
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 1455
BmiI GGNNCC 1 cut(s) 1457
BmrI ACTGGG 1 cut(s) 1161
BmsI GCATC 3 cut(s) 1307, 1348, 1480
BmuI ACTGGG 1 cut(s) 1161
BpiI GAAGAC 1 cut(s) 1311
BplI GAGNNNNNCTC 4 cut(s) 1119, 1151, 1409, 1441
Bpu1102I GCTNAGC 1 cut(s) 714
BsaAI YACGTR 1 cut(s) 1045
BsaHI GRCGYC 2 cut(s) 1156, 1224
BsaXI ACNNNNNCTCC 6 cut(s) 155, 185, 427, 457, 947, 977
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 180, 799, 1138, 1250
Bse1I ACTGG 2 cut(s) 350, 1156
Bse3DI GCAATG 1 cut(s) 121
BseGI GGATG 5 cut(s) 607, 641, 700, 849, 1495
BseLI CCNNNNNNNGG 5 cut(s) 83, 180, 799, 1138, 1250
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 4 cut(s) 455, 917, 1454, 1511
BseNI ACTGG 2 cut(s) 350, 1156
BseRI GAGGAG 4 cut(s) 66, 252, 448, 1365
BseSI GKGCMC 1 cut(s) 980
BseXI GCAGC 3 cut(s) 113, 400, 815
BsgI GTGCAG 2 cut(s) 370, 498
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 225
BslFI GGGAC 2 cut(s) 604, 1441
BslI CCNNNNNNNGG 5 cut(s) 83, 180, 799, 1138, 1250
BsmAI GTCTC 3 cut(s) 492, 967, 1429
BsmBI CGTCTC 1 cut(s) 967
BsmFI GGGAC 2 cut(s) 604, 1441
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 980
Bsp143I GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
Bsp1720I GCTNAGC 1 cut(s) 714
BspACI CCGC 4 cut(s) 84, 525, 625, 1531
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 4 cut(s) 456, 916, 1455, 1512
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 1457
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 1050
BspPI GGATC 4 cut(s) 793, 1235, 1287, 1533
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 2 cut(s) 350, 1156
BssMI GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
BssNI GRCGYC 2 cut(s) 1156, 1224
Bst4CI ACNGT 5 cut(s) 183, 443, 945, 1015, 1383
BstACI GRCGYC 2 cut(s) 1156, 1224
BstBAI YACGTR 1 cut(s) 1045
BstC8I GCNNGC 4 cut(s) 36, 253, 661, 924
BstDEI CTNAG 6 cut(s) 464, 714, 903, 1406, 1463, 1520
BstF5I GGATG 5 cut(s) 607, 641, 700, 849, 1495
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 2 cut(s) 29, 49
BstHHI GCGC 3 cut(s) 28, 48, 68
BstKTI GATC 6 cut(s) 380, 700, 788, 1243, 1282, 1528
BstMAI GTCTC 3 cut(s) 492, 967, 1429
BstMBI GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
BstMWI GCNNNNNNNGC 2 cut(s) 52, 261
BstSFI CTRYAG 2 cut(s) 657, 1379
BstSLI GKGCMC 1 cut(s) 980
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 113, 400, 815
BstV2I GAAGAC 1 cut(s) 1311
BstX2I RGATCY 2 cut(s) 785, 1525
BstYI RGATCY 2 cut(s) 785, 1525
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 225
BtgZI GCGATG 2 cut(s) 15, 65
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 5 cut(s) 607, 641, 700, 849, 1495
BtsIMutI CAGTG 2 cut(s) 343, 950
BveI ACCTGC 1 cut(s) 1050
Cac8I GCNNGC 4 cut(s) 36, 253, 661, 924
CciI TCATGA 1 cut(s) 826
CfoI GCGC 3 cut(s) 28, 48, 68
Cfr13I GGNCC 1 cut(s) 1455
CseI GACGC 2 cut(s) 97, 1145
Csp6I GTAC 4 cut(s) 444, 461, 1353, 1400
CviAII CATG 7 cut(s) 218, 692, 797, 827, 1084, 1088, 1339
CviQI GTAC 4 cut(s) 444, 461, 1353, 1400
DdeI CTNAG 6 cut(s) 464, 714, 903, 1406, 1463, 1520
DpnI GATC 6 cut(s) 379, 699, 787, 1242, 1281, 1527
DpnII GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
DraI TTTAAA 1 cut(s) 597
DrdI GACNNNNNNGTC 1 cut(s) 1421
DseDI GACNNNNNNGTC 1 cut(s) 1421
EaeI YGGCCR 1 cut(s) 223
EciI GGCGGA 1 cut(s) 1520
Eco32I GATATC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 1455
Eco57I CTGAAG 1 cut(s) 1160
EcoO109I RGGNCCY 1 cut(s) 1455
EcoRV GATATC 1 cut(s) 862
EcoT22I ATGCAT 4 cut(s) 1089, 1310, 1363, 1370
Esp3I CGTCTC 1 cut(s) 967
FaeI CATG 7 cut(s) 221, 695, 800, 830, 1087, 1091, 1342
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 2 cut(s) 604, 1441
FatI CATG 7 cut(s) 217, 691, 796, 826, 1083, 1087, 1338
FauNDI CATATG 1 cut(s) 1284
Fnu4HI GCNGC 5 cut(s) 85, 127, 389, 626, 804
FokI GGATG 5 cut(s) 614, 628, 687, 836, 1502
Fsp4HI GCNGC 5 cut(s) 85, 127, 389, 626, 804
FspBI CTAG 4 cut(s) 105, 234, 279, 611
GlaI GCGC 3 cut(s) 27, 47, 67
GluI GCNGC 5 cut(s) 85, 127, 389, 626, 804
HaeII RGCGCY 2 cut(s) 29, 49
HaeIII GGCC 1 cut(s) 225
HgaI GACGC 2 cut(s) 97, 1145
HhaI GCGC 3 cut(s) 28, 48, 68
Hin1I GRCGYC 2 cut(s) 1156, 1224
Hin1II CATG 7 cut(s) 221, 695, 800, 830, 1087, 1091, 1342
Hin6I GCGC 3 cut(s) 26, 46, 66
HinP1I GCGC 3 cut(s) 26, 46, 66
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 3 cut(s) 249, 262, 312
HinfI GANTC 6 cut(s) 269, 326, 846, 949, 1128, 1342
HpaI GTTAAC 1 cut(s) 1018
HphI GGTGA 3 cut(s) 155, 1265, 1424
Hpy166II GTNNAC 2 cut(s) 948, 1018
Hpy188I TCNGA 9 cut(s) 274, 289, 577, 646, 673, 840, 906, 1477, 1521
Hpy188III TCNNGA 3 cut(s) 323, 827, 1073
Hpy8I GTNNAC 2 cut(s) 948, 1018
HpyAV CCTTC 3 cut(s) 517, 1060, 1254
HpyCH4III ACNGT 5 cut(s) 183, 443, 945, 1015, 1383
HpyCH4IV ACGT 7 cut(s) 95, 137, 176, 960, 1044, 1224, 1330
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 261
HpyF3I CTNAG 6 cut(s) 464, 714, 903, 1406, 1463, 1520
HpySE526I ACGT 7 cut(s) 95, 137, 176, 960, 1044, 1224, 1330
Hsp92I GRCGYC 2 cut(s) 1156, 1224
Hsp92II CATG 7 cut(s) 221, 695, 800, 830, 1087, 1091, 1342
HspAI GCGC 3 cut(s) 26, 46, 66
KspAI GTTAAC 1 cut(s) 1018
Kzo9I GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
LmnI GCTCC 4 cut(s) 79, 1075, 1141, 1231
Lsp1109I GCAGC 3 cut(s) 113, 400, 815
LweI GCATC 3 cut(s) 1307, 1348, 1480
MaeI CTAG 4 cut(s) 105, 234, 279, 611
MaeII ACGT 7 cut(s) 95, 137, 176, 960, 1044, 1224, 1330
MaeIII GTNAC 6 cut(s) 177, 437, 911, 1045, 1253, 1412
MalI GATC 6 cut(s) 379, 699, 787, 1242, 1281, 1527
MboI GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
MboII GAAGA 5 cut(s) 388, 815, 1166, 1311, 1490
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 2 cut(s) 785, 1525
MhlI GDGCHC 1 cut(s) 980
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 7 cut(s) 69, 454, 535, 555, 720, 761, 1191
MluNI TGGCCA 1 cut(s) 225
MlyI GAGTC 3 cut(s) 943, 1137, 1351
MmeI TCCRAC 1 cut(s) 1365
Mox20I TGGCCA 1 cut(s) 225
Mph1103I ATGCAT 4 cut(s) 1089, 1310, 1363, 1370
MscI TGGCCA 1 cut(s) 225
MseI TTAA 6 cut(s) 20, 360, 494, 596, 1017, 1212
MslI CAYNNNNRTG 2 cut(s) 1274, 1303
Msp20I TGGCCA 1 cut(s) 225
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 750
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 52, 261
NdeI CATATG 1 cut(s) 1284
NdeII GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
NlaIII CATG 7 cut(s) 221, 695, 800, 830, 1087, 1091, 1342
NlaIV GGNNCC 1 cut(s) 1457
NmuCI GTSAC 4 cut(s) 177, 911, 1253, 1412
NsiI ATGCAT 4 cut(s) 1089, 1310, 1363, 1370
PagI TCATGA 1 cut(s) 826
PctI GAATGC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 269, 326, 846
PkrI GCNGC 5 cut(s) 86, 128, 390, 627, 805
PleI GAGTC 3 cut(s) 943, 1136, 1350
PpsI GAGTC 3 cut(s) 943, 1136, 1350
Ppu21I YACGTR 1 cut(s) 1045
PpuMI RGGWCCY 1 cut(s) 1455
PsiI TTATAA 1 cut(s) 1148
Psp5II RGGWCCY 1 cut(s) 1455
PspN4I GGNNCC 1 cut(s) 1457
PspPI GGNCC 1 cut(s) 1455
PspPPI RGGWCCY 1 cut(s) 1455
PstI CTGCAG 1 cut(s) 661
PsuI RGATCY 2 cut(s) 785, 1525
RsaI GTAC 4 cut(s) 445, 462, 1354, 1401
RsaNI GTAC 4 cut(s) 444, 461, 1353, 1400
RseI CAYNNNNRTG 2 cut(s) 1274, 1303
SaqAI TTAA 6 cut(s) 20, 360, 494, 596, 1017, 1212
SatI GCNGC 5 cut(s) 85, 127, 389, 626, 804
Sau3AI GATC 6 cut(s) 377, 697, 785, 1240, 1279, 1525
Sau96I GGNCC 1 cut(s) 1455
ScaI AGTACT 1 cut(s) 462
SchI GAGTC 3 cut(s) 943, 1137, 1351
SduI GDGCHC 1 cut(s) 980
SfaNI GCATC 3 cut(s) 1307, 1348, 1480
SfcI CTRYAG 2 cut(s) 657, 1379
SinI GGWCC 1 cut(s) 1455
SmiMI CAYNNNNRTG 2 cut(s) 1274, 1303
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 7 cut(s) 69, 454, 535, 555, 720, 761, 1191
SsiI CCGC 4 cut(s) 84, 525, 625, 1531
SspI AATATT 1 cut(s) 1079
SspMI CTAG 4 cut(s) 105, 234, 279, 611
TaaI ACNGT 5 cut(s) 183, 443, 945, 1015, 1383
TaiI ACGT 7 cut(s) 98, 140, 179, 963, 1047, 1227, 1333
TasI AATT 7 cut(s) 69, 454, 535, 555, 720, 761, 1191
TatI WGTACW 3 cut(s) 443, 460, 1352
TauI GCSGC 2 cut(s) 87, 628
TfiI GAWTC 3 cut(s) 269, 326, 846
Tru1I TTAA 6 cut(s) 20, 360, 494, 596, 1017, 1212
Tru9I TTAA 6 cut(s) 20, 360, 494, 596, 1017, 1212
TscAI CASTG 2 cut(s) 350, 950
TseFI GTSAC 4 cut(s) 177, 911, 1253, 1412
TseI GCWGC 3 cut(s) 126, 388, 803
Tsp45I GTSAC 4 cut(s) 177, 911, 1253, 1412
TspDTI ATGAA 7 cut(s) 133, 146, 561, 815, 1019, 1072, 1116
TspRI CASTG 2 cut(s) 350, 950
VpaK11BI GGWCC 1 cut(s) 1455
XspI CTAG 4 cut(s) 105, 234, 279, 611
ZraI GACGTC 1 cut(s) 1225
ZrmI AGTACT 1 cut(s) 462
Zsp2I ATGCAT 4 cut(s) 1089, 1310, 1363, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.