MD04G1211700.v1.1
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
29611116 .. 29615380
4265 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1211700.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGGCGAATGGTGAAGTGAAAGGACCTTATTCTTCATGGGGAGCTGGAAATGAACCCAAAAAATTATCACTGAAGGTCCCAGATGAGATTTCTAAGGTGAAACAGAGAAAGCAGAGAGCACTACTTACTTCTGCTTCTGCCCAAGATTTGAGGTATATCGACATGGAAAAAGAGAAGGACGATGTCCAAACTCCTAGAGGAGTTTTAGAAGCTTGCATGAGAGGCTTTGAACCCGAGACTAGCTCTTCTGAAAACAGCACAACTGAAAATAGCACGACTGAGTCATCAGTGCATTGTTCAAGTTCAAGTTCACTTTCTCACTGGCATAAATTCTTTAAACAATGGGGTAAGAGATCGCTTAAGCGCTTAGTCTCCTTCCCTCCACTTGGTGTGCCAAAGATATCATCACGAAGAAGGATCGGGTGTGCAAGAGAGAATCCAGCATTGAATAATATATCCAACTTCAAGTCTTCGTTGGTGAATTTTACCATTGCCGAGCTCCAAAAGGCGACCGATAATTTTAACAGTGAAAACACAATTGGAAAGGGTGGTTATTCAGAAGTTTACAAGGGTCGCTTGAAAAGTGGGCAGCTAGTAGCAGTCAAGCGGCTGACGAAAGGAACAGCAGATGAGAAAACAGCAGGCTTTCTATCTGAACTTGGCACTATAGCTCATGTTGATCATCCTAATACTGCTAAGTTGATTGGATGTTGCGTTGAAGGAGGAATGCACCTCGTTTTCGAATTATTTTCACTTGGAAGTTTAGGATCGCTCCTGCACGGTCCGAAGGCTAATGAACTTGATTGGAGTAAAAGATACAAAATTGCTTTGGGGACAGCAGATGGTCTGCTGTATCTTCATGAGAGTTGCCAGAGGCGAATCATTCATAGAGACATCAAAGCCGATAATATTCTGCTCACAGAGGATTTTGTGCCGCAGATATGTGATTTCGGGCTTGCAAAGTGGCTACCCAAACAATGGACTCATCACAATGTCCCTAAATCTGAGGGTACATTTGGGTATTTTGCTCCCGAGTATTTCATGCATGGAATAGTAGATGAAAAAACTGATGTTTATTCTTTCGGAGTCCTACTACTGGAGCTTATAACCGGGCGTCCAGCTTTGGATGATCTTCAGAAAAGCCTTGTACTTTGGGCAAAGCCTTTGCTTGATAACAATGAGATCAAGGAGCTTGTCGATCCTAATATTGGTGACAACTATGACCGGAAAGAAATGGATCACATGGTTTTGACAGCAGCTTTATGCATCGAGCAGTCTTCTATTCTACGTCCTCGCATGAGTCAGGTTGTGGTGCTGCTAAGAGGCGATGATTATGTATCCAAATGTGCAAAAGAATCGAAAAGGAGGTTTCTGCAAAGAACATACTCAGAAGAACTATCGGATGCACAAGAATATAATTCAACTAAGTATCTGGGCGATCTGAACCGACACAAGCAGGTCGCTTTCAGTTCTTGA

Protein Analysis

492

Amino Acids

55.04

Weight (kDa)

8.53

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 175 - 377 5.3e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 177 - 437 3.9e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1106
Acc36I ACCTGC 1 cut(s) 1447
AccB7I CCANNNNNTGG 1 cut(s) 978
AciI CCGC 2 cut(s) 607, 935
AclWI GGATC 4 cut(s) 425, 775, 1193, 1245
AcsI RAATTY 2 cut(s) 329, 481
AcuI CTGAAG 2 cut(s) 92, 1118
AcyI GRCGYC 1 cut(s) 1114
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 1012, 1149
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 8 cut(s) 230, 300, 306, 448, 466, 580, 719, 1422
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
Alw21I GWGCWC 2 cut(s) 121, 501
Alw26I GTCTC 3 cut(s) 230, 376, 885
AlwI GGATC 4 cut(s) 425, 775, 1193, 1245
Ama87I CYCGRG 2 cut(s) 233, 1031
Aor51HI AGCGCT 1 cut(s) 365
ApeKI GCWGC 3 cut(s) 589, 1256, 1315
ApoI RAATTY 2 cut(s) 329, 481
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 3 cut(s) 23, 76, 782
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 4 cut(s) 23, 109, 490, 1223
AsuII TTCGAA 1 cut(s) 741
AvaI CYCGRG 2 cut(s) 233, 1031
AvaII GGWCC 3 cut(s) 23, 76, 782
BanII GRGCYC 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 462, 1269
Bbv12I GWGCWC 2 cut(s) 121, 501
BbvI GCAGC 3 cut(s) 601, 1268, 1302
BccI CCATC 1 cut(s) 836
BcgI CGANNNNNNTGC 2 cut(s) 1338, 1372
BciVI GTATCC 1 cut(s) 1348
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 3 cut(s) 230, 376, 885
BfaI CTAG 3 cut(s) 195, 240, 593
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 367
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 1447
BfuI GTATCC 1 cut(s) 1348
BisI GCNGC 5 cut(s) 590, 608, 935, 1257, 1316
BlsI GCNGC 5 cut(s) 591, 609, 936, 1258, 1317
Bme1390I CCNGG 1 cut(s) 1111
Bme18I GGWCC 3 cut(s) 23, 76, 782
BmeT110I CYCGRG 2 cut(s) 233, 1031
BmgT120I GGNCC 3 cut(s) 23, 76, 782
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 1111
BmsI GCATC 2 cut(s) 1275, 1393
BpiI GAAGAC 2 cut(s) 462, 1269
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 1118
Bpu14I TTCGAA 1 cut(s) 741
BpuMI CCSGG 1 cut(s) 1111
BsaHI GRCGYC 1 cut(s) 1114
BsaWI WCCGGW 1 cut(s) 1224
Bsc4I CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
Bse1I ACTGG 2 cut(s) 326, 1101
Bse3DI GCAATG 1 cut(s) 489
BseGI GGATG 4 cut(s) 682, 713, 1132, 1408
BseLI CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 3 cut(s) 270, 996, 1401
BseNI ACTGG 2 cut(s) 326, 1101
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 601, 1268, 1302
BsgI GTGCAG 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 513
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 2 cut(s) 121, 501
BsiHKCI CYCGRG 2 cut(s) 233, 1031
BsiSI CCGG 2 cut(s) 1110, 1225
BslFI GGGAC 3 cut(s) 62, 847, 980
BslI CCNNNNNNNGG 4 cut(s) 386, 978, 1096, 1208
BsmAI GTCTC 3 cut(s) 230, 376, 885
BsmFI GGGAC 3 cut(s) 62, 847, 980
BsmI GAATGC 1 cut(s) 732
BsoBI CYCGRG 2 cut(s) 233, 1031
Bsp119I TTCGAA 1 cut(s) 741
Bsp1286I GDGCHC 2 cut(s) 121, 501
Bsp143I GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
BspACI CCGC 2 cut(s) 607, 935
BspCNI CTCAG 3 cut(s) 271, 997, 1400
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 1447
BspPI GGATC 4 cut(s) 425, 775, 1193, 1245
BspQI GCTCTTC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 741
BspTI CTTAAG 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 2 cut(s) 326, 1101
BssMI GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
BssNI GRCGYC 1 cut(s) 1114
Bst4CI ACNGT 2 cut(s) 527, 782
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 1114
BstAFI CTTAAG 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 3 cut(s) 214, 643, 957
BstDEI CTNAG 8 cut(s) 93, 279, 367, 696, 1005, 1319, 1387, 1425
BstF5I GGATG 4 cut(s) 682, 713, 1132, 1408
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 9 cut(s) 356, 420, 682, 770, 1132, 1185, 1201, 1240, 1441
BstMAI GTCTC 3 cut(s) 230, 376, 885
BstMBI GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 1109
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 3 cut(s) 601, 1268, 1302
BstV2I GAAGAC 2 cut(s) 462, 1269
BsuI GTATCC 1 cut(s) 1348
BtgZI GCGATG 1 cut(s) 1341
BtsCI GGATG 4 cut(s) 682, 713, 1132, 1408
BtsIMutI CAGTG 4 cut(s) 68, 294, 319, 532
BveI ACCTGC 1 cut(s) 1447
Cac8I GCNNGC 3 cut(s) 214, 643, 957
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 3 cut(s) 23, 76, 782
CpoI CGGWCCG 1 cut(s) 782
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 2 cut(s) 1011, 1148
CspI CGGWCCG 1 cut(s) 782
CviAII CATG 9 cut(s) 36, 163, 217, 674, 860, 1042, 1046, 1243, 1297
CviQI GTAC 2 cut(s) 1011, 1148
DdeI CTNAG 8 cut(s) 93, 279, 367, 696, 1005, 1319, 1387, 1425
DpnI GATC 9 cut(s) 355, 419, 681, 769, 1131, 1184, 1200, 1239, 1440
DpnII GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
DraI TTTAAA 1 cut(s) 337
DraIII CACNNNGTG 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 402
Eco47I GGWCC 3 cut(s) 23, 76, 782
Eco47III AGCGCT 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 92, 1118
Eco88I CYCGRG 2 cut(s) 233, 1031
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 2 cut(s) 23, 76
EcoRV GATATC 1 cut(s) 402
EcoT22I ATGCAT 2 cut(s) 1047, 1268
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 9 cut(s) 39, 166, 220, 677, 863, 1045, 1049, 1246, 1300
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 3 cut(s) 62, 847, 980
FatI CATG 9 cut(s) 35, 162, 216, 673, 859, 1041, 1045, 1242, 1296
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 5 cut(s) 590, 608, 935, 1257, 1316
FokI GGATG 4 cut(s) 669, 720, 1139, 1415
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 5 cut(s) 590, 608, 935, 1257, 1316
FspBI CTAG 3 cut(s) 195, 240, 593
GlaI GCGC 1 cut(s) 365
GluI GCNGC 5 cut(s) 590, 608, 935, 1257, 1316
GsuI CTGGAG 1 cut(s) 1118
HaeII RGCGCY 1 cut(s) 367
HapII CCGG 2 cut(s) 1110, 1225
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 1 cut(s) 366
Hin1I GRCGYC 1 cut(s) 1114
Hin1II CATG 9 cut(s) 39, 166, 220, 677, 863, 1045, 1049, 1246, 1300
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 7 cut(s) 281, 436, 879, 982, 1086, 1300, 1355
HpaII CCGG 2 cut(s) 1110, 1225
HphI GGTGA 4 cut(s) 23, 109, 490, 1223
Hpy166II GTNNAC 2 cut(s) 311, 565
Hpy188III TCNNGA 4 cut(s) 408, 860, 1031, 1473
Hpy8I GTNNAC 2 cut(s) 311, 565
HpyAV CCTTC 6 cut(s) 67, 169, 385, 408, 713, 781
HpyCH4III ACNGT 2 cut(s) 527, 782
HpyCH4IV ACGT 1 cut(s) 1288
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 8 cut(s) 93, 279, 367, 696, 1005, 1319, 1387, 1425
HpySE526I ACGT 1 cut(s) 1288
Hsp92I GRCGYC 1 cut(s) 1114
Hsp92II CATG 9 cut(s) 39, 166, 220, 677, 863, 1045, 1049, 1246, 1300
HspAI GCGC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
LguI GCTCTTC 1 cut(s) 250
LmnI GCTCC 6 cut(s) 41, 504, 777, 1033, 1099, 1189
Lsp1109I GCAGC 3 cut(s) 601, 1268, 1302
LweI GCATC 2 cut(s) 1275, 1393
MaeI CTAG 3 cut(s) 195, 240, 593
MaeII ACGT 1 cut(s) 1288
MaeIII GTNAC 1 cut(s) 1211
MalI GATC 9 cut(s) 355, 419, 681, 769, 1131, 1184, 1200, 1239, 1440
MboI GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
MboII GAAGA 8 cut(s) 24, 237, 423, 462, 848, 1124, 1269, 1403
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 2 cut(s) 121, 501
MluCI AATT 8 cut(s) 62, 329, 481, 517, 537, 743, 822, 1417
MlyI GAGTC 4 cut(s) 290, 976, 1095, 1309
MmeI TCCRAC 1 cut(s) 483
Mph1103I ATGCAT 2 cut(s) 1047, 1268
MseI TTAA 3 cut(s) 336, 360, 522
MslI CAYNNNNRTG 1 cut(s) 990
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 1110, 1225
MspR9I CCNGG 1 cut(s) 1111
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 1111
NdeII GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
NlaIII CATG 9 cut(s) 39, 166, 220, 677, 863, 1045, 1049, 1246, 1300
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 1 cut(s) 1211
NsiI ATGCAT 2 cut(s) 1047, 1268
NspV TTCGAA 1 cut(s) 741
PagI TCATGA 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 250
PctI GAATGC 1 cut(s) 732
PfeI GAWTC 3 cut(s) 436, 879, 1355
PflFI GACNNNGTC 2 cut(s) 182, 280
PflMI CCANNNNNTGG 1 cut(s) 978
PkrI GCNGC 5 cut(s) 591, 609, 936, 1258, 1317
PleI GAGTC 4 cut(s) 289, 976, 1094, 1308
PpsI GAGTC 4 cut(s) 289, 976, 1094, 1308
PpuMI RGGWCCY 2 cut(s) 23, 76
PsiI TTATAA 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 2 cut(s) 23, 76
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 23, 76, 782
PspPPI RGGWCCY 2 cut(s) 23, 76
PsyI GACNNNGTC 2 cut(s) 182, 280
RsaI GTAC 2 cut(s) 1012, 1149
RsaNI GTAC 2 cut(s) 1011, 1148
RseI CAYNNNNRTG 1 cut(s) 990
Rsr2I CGGWCCG 1 cut(s) 782
RsrII CGGWCCG 1 cut(s) 782
SacI GAGCTC 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 336, 360, 522
SatI GCNGC 5 cut(s) 590, 608, 935, 1257, 1316
Sau3AI GATC 9 cut(s) 353, 417, 679, 767, 1129, 1182, 1198, 1237, 1438
Sau96I GGNCC 3 cut(s) 23, 76, 782
SchI GAGTC 4 cut(s) 290, 976, 1095, 1309
ScrFI CCNGG 1 cut(s) 1111
SduI GDGCHC 2 cut(s) 121, 501
SfaNI GCATC 2 cut(s) 1275, 1393
SfcI CTRYAG 1 cut(s) 666
SfuI TTCGAA 1 cut(s) 741
SinI GGWCC 3 cut(s) 23, 76, 782
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 8 cut(s) 62, 329, 481, 517, 537, 743, 822, 1417
SsiI CCGC 2 cut(s) 607, 935
SspI AATATT 2 cut(s) 910, 1207
SspMI CTAG 3 cut(s) 195, 240, 593
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 1109
TaaI ACNGT 2 cut(s) 527, 782
TaiI ACGT 1 cut(s) 1291
TaqI TCGA 5 cut(s) 159, 741, 1197, 1269, 1358
TaqII GACCGA 1 cut(s) 527
TasI AATT 8 cut(s) 62, 329, 481, 517, 537, 743, 822, 1417
TatI WGTACW 1 cut(s) 1147
TauI GCSGC 2 cut(s) 610, 937
TfiI GAWTC 3 cut(s) 436, 879, 1355
Tru1I TTAA 3 cut(s) 336, 360, 522
Tru9I TTAA 3 cut(s) 336, 360, 522
TscAI CASTG 4 cut(s) 75, 294, 326, 532
TseFI GTSAC 1 cut(s) 1211
TseI GCWGC 3 cut(s) 589, 1256, 1315
Tsp45I GTSAC 1 cut(s) 1211
TspDTI ATGAA 7 cut(s) 24, 66, 810, 848, 875, 1030, 1074
TspRI CASTG 4 cut(s) 75, 294, 326, 532
Tth111I GACNNNGTC 2 cut(s) 182, 280
Van91I CCANNNNNTGG 1 cut(s) 978
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 3 cut(s) 23, 76, 782
XapI RAATTY 2 cut(s) 329, 481
XspI CTAG 3 cut(s) 195, 240, 593
Zsp2I ATGCAT 2 cut(s) 1047, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.