Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007101

Physical Location & Seq

Genomic Coordinates Forward (+)

20674771 .. 20677760

Gene Structure 2990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCGAATGGTGAAGTGAAAGGACCTTATTCTTCATGGGGAGCTGGAAATGAACCCAAAAAATTATCACTGAAGGTCCCAGATGAGATTTCTGAGGTGAAACAGAGAAAACAGAAAGCACTACTTACTTCTGCTTCTGCCCAAGATTTGAGGTATATCGACATGGAAAAAGAGAAGGACGATGTCCAAACTCCTAGAGGAGTTTTAGAAGCTTGCATGAGAGGCTTTGAACCCGAGACTAGTTCTTCTGAAAACAGCACGACTGAGTCATCAGTGCAAGGTTCAAGTTCAAGTTCACTTTCTCACTGGCGTAAATTCTTTAAACAATGGGGTAAGAGATCGCTTAAGCGCTTAGTCTCCTTCCCTCCGCTTGGTGTGCCAAAGATATCATCACGAAGAAGGATCGGGTGTGCAAGAGAGAATCCAGCATTGACTAATATATCCAACTTCAAGTCTTCGTTGGTGAACTTTACCATTGCCGAGCTCCAAAAGGCGACTGATGATTTTAACGGTGAAAACACAATTGGAAAGGGTGGTTATTCAGAAGTTTACAAGGGTCGCTTGAAAAGTGGGCAGCTAGTAGCAGTCAAGCGGCTGACGAAAGGAACAGCAGATGAGAAAACAGCAGGCTTTCTATCTGAACTTGGCACTATAGCTCATGTTGATCATCCTAATACTGCAAAGTTGATTGGATGTTGCGTTGAAGGAGGAATGCACCTCGTTTTCGAATTATTTTCACTTGGAAGTTTAGGATCGCTCCTGCACGGTCCAAAGGCTAATGAAATTGATTGGAGTAAAAGATACAAAATTGCTTTGGGGACAGCAGATGGTCTGCTGTATCTTCATGAGAGTTGCCAGAGGCGAATCATTCATAGAGACATTAAAGCTGATAATATTCTGCTCACAGAAGATTTTGTGCCACAGATATGTGATTTCGGGCTTGCAAAGTGGCTACCCAAACAATGGACTCATCACAATGTCCCTAAATCTGAGGGTACATTTGGGTATTTTGCTCCTGAGTATTTCATGCATGGAATAGTAGATGAAAAAACTGATGTTTATTCTTTCGGAGTCTTACTCTTGGAGCTTATAACCGGGCGTCCAGCTTTGCAAATCCTCATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

376

Amino Acids

41.61

Weight (kDa)

8.94

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	172 - 366	5e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	172 - 371	9.3e-39	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05140 AT3G05140
fragaria_vesca	FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990 FvH4_6g04990
malus_domestica	MD04G1211700.v1.1 MD12G1226600.v1.1
prunus_persica	Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1 Prupe.6G332300_v2.0.a1
pyrus_communis	pycom04g18770 pycom12g21110
rosa_chinensis	RchiOBHm_Chr3g0453501
rosa_laevigata	RLG00000025508
rosa_multiflora	Rmu_sc0000510.1_g000014
rosa_roxburghii	Rroxscaffold_6G00430470
rosa_rugosa	Rorug02G0649600 Rorug02G0649600
rosa_samantha	Rh3AG052500 Rh3BG053900 Rh3CG053300 Rh3DG054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1091
AccB7I	CCANNNNNTGG	1 cut(s)	963
AciI	CCGC	2 cut(s)	368, 592
AclWI	GGATC	2 cut(s)	410, 760
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	1099
AfaI	GTAC	1 cut(s)	997
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	371, 963
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	6 cut(s)	230, 285, 291, 451, 565, 704
AhlI	ACTAGT	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	8 cut(s)	44, 212, 484, 577, 656, 887, 1087, 1106
AluI	AGCT	8 cut(s)	44, 212, 484, 577, 656, 887, 1087, 1106
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	3 cut(s)	230, 361, 870
AlwI	GGATC	2 cut(s)	410, 760
Ama87I	CYCGRG	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	23, 76, 767
AsuC2I	CCSGG	1 cut(s)	1096
AsuHPI	GGTGA	4 cut(s)	23, 109, 475, 524
AsuII	TTCGAA	1 cut(s)	726
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	23, 76, 767
BanII	GRGCYC	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	1 cut(s)	821
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	1096
BcoDI	GTCTC	3 cut(s)	230, 361, 870
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	3 cut(s)	195, 240, 578
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	575, 593
BlsI	GCNGC	2 cut(s)	576, 594
Bme1390I	CCNGG	1 cut(s)	1096
Bme18I	GGWCC	3 cut(s)	23, 76, 767
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	23, 76, 767
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	1096
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	1062, 1094
Bpu14I	TTCGAA	1 cut(s)	726
BpuMI	CCSGG	1 cut(s)	1096
BsaHI	GRCGYC	1 cut(s)	1099
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 963
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	474
BseGI	GGATG	2 cut(s)	667, 698
BseLI	CCNNNNNNNGG	2 cut(s)	371, 963
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	4 cut(s)	84, 255, 981, 1008
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	586
BsgI	GTGCAG	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	1095
BslFI	GGGAC	3 cut(s)	62, 832, 965
BslI	CCNNNNNNNGG	2 cut(s)	371, 963
BsmAI	GTCTC	3 cut(s)	230, 361, 870
BsmFI	GGGAC	3 cut(s)	62, 832, 965
BsmI	GAATGC	1 cut(s)	717
BsoBI	CYCGRG	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	338, 402, 664, 752
BspACI	CCGC	2 cut(s)	368, 592
BspCNI	CTCAG	4 cut(s)	85, 256, 982, 1009
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	410, 760
BspT104I	TTCGAA	1 cut(s)	726
BspTI	CTTAAG	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	311
BssMI	GATC	4 cut(s)	338, 402, 664, 752
BssNI	GRCGYC	1 cut(s)	1099
Bst4CI	ACNGT	2 cut(s)	512, 767
BstACI	GRCGYC	1 cut(s)	1099
BstAFI	CTTAAG	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	726
BstC8I	GCNNGC	3 cut(s)	214, 628, 942
BstDEI	CTNAG	5 cut(s)	93, 264, 352, 990, 1017
BstF5I	GGATG	2 cut(s)	667, 698
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	4 cut(s)	341, 405, 667, 755
BstMAI	GTCTC	3 cut(s)	230, 361, 870
BstMBI	GATC	4 cut(s)	338, 402, 664, 752
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 376
BstSCI	CCNGG	1 cut(s)	1094
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	667, 698
BtsIMutI	CAGTG	3 cut(s)	68, 279, 304
Cac8I	GCNNGC	3 cut(s)	214, 628, 942
CciI	TCATGA	1 cut(s)	844
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	23, 76, 767
CseI	GACGC	1 cut(s)	1088
Csp6I	GTAC	1 cut(s)	996
CviAII	CATG	7 cut(s)	36, 163, 217, 659, 845, 1027, 1031
CviQI	GTAC	1 cut(s)	996
DdeI	CTNAG	5 cut(s)	93, 264, 352, 990, 1017
DpnI	GATC	4 cut(s)	340, 404, 666, 754
DpnII	GATC	4 cut(s)	338, 402, 664, 752
DraI	TTTAAA	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	23, 76, 767
Eco47III	AGCGCT	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	484
EcoO109I	RGGNCCY	2 cut(s)	23, 76
EcoRV	GATATC	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	1032
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	7 cut(s)	39, 166, 220, 662, 848, 1030, 1034
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 545, 577
FaqI	GGGAC	3 cut(s)	62, 832, 965
FatI	CATG	7 cut(s)	35, 162, 216, 658, 844, 1026, 1030
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	575, 593
FokI	GGATG	2 cut(s)	654, 705
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	575, 593
FspBI	CTAG	3 cut(s)	195, 240, 578
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	575, 593
HaeII	RGCGCY	1 cut(s)	352
HapII	CCGG	1 cut(s)	1095
HgaI	GACGC	1 cut(s)	1088
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	1099
Hin1II	CATG	7 cut(s)	39, 166, 220, 662, 848, 1030, 1034
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	5 cut(s)	266, 421, 864, 967, 1071
HpaII	CCGG	1 cut(s)	1095
HphI	GGTGA	4 cut(s)	23, 109, 475, 524
Hpy166II	GTNNAC	3 cut(s)	296, 466, 550
Hpy188I	TCNGA	7 cut(s)	94, 250, 544, 640, 991, 1070, 1124
Hpy188III	TCNNGA	3 cut(s)	393, 845, 1016
Hpy8I	GTNNAC	3 cut(s)	296, 466, 550
HpyAV	CCTTC	5 cut(s)	67, 169, 370, 393, 698
HpyCH4III	ACNGT	2 cut(s)	512, 767
HpyCH4V	TGCA	9 cut(s)	216, 277, 413, 680, 715, 763, 944, 1030, 1111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 376
HpyF3I	CTNAG	5 cut(s)	93, 264, 352, 990, 1017
Hsp92I	GRCGYC	1 cut(s)	1099
Hsp92II	CATG	7 cut(s)	39, 166, 220, 662, 848, 1030, 1034
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	338, 402, 664, 752
LmnI	GCTCC	5 cut(s)	41, 489, 762, 1018, 1084
Lsp1109I	GCAGC	1 cut(s)	586
MaeI	CTAG	3 cut(s)	195, 240, 578
MalI	GATC	4 cut(s)	340, 404, 666, 754
MboI	GATC	4 cut(s)	338, 402, 664, 752
MboII	GAAGA	6 cut(s)	24, 237, 408, 447, 833, 920
MfeI	CAATTG	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	6 cut(s)	62, 314, 522, 728, 783, 807
MlyI	GAGTC	3 cut(s)	275, 961, 1080
MmeI	TCCRAC	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	1032
MseI	TTAA	4 cut(s)	321, 345, 507, 882
MslI	CAYNNNNRTG	2 cut(s)	925, 975
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	1 cut(s)	1095
MspR9I	CCNGG	1 cut(s)	1096
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	717
MwoI	GCNNNNNNNGC	2 cut(s)	222, 376
NciI	CCSGG	1 cut(s)	1096
NdeII	GATC	4 cut(s)	338, 402, 664, 752
NlaIII	CATG	7 cut(s)	39, 166, 220, 662, 848, 1030, 1034
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	1032
NspV	TTCGAA	1 cut(s)	726
PagI	TCATGA	1 cut(s)	844
PctI	GAATGC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	421, 864
PflFI	GACNNNGTC	2 cut(s)	182, 265
PflMI	CCANNNNNTGG	1 cut(s)	963
PkrI	GCNGC	2 cut(s)	576, 594
PleI	GAGTC	3 cut(s)	274, 961, 1079
PpsI	GAGTC	3 cut(s)	274, 961, 1079
PpuMI	RGGWCCY	2 cut(s)	23, 76
PsiI	TTATAA	1 cut(s)	1091
Psp124BI	GAGCTC	1 cut(s)	486
Psp5II	RGGWCCY	2 cut(s)	23, 76
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	3 cut(s)	23, 76, 767
PspPPI	RGGWCCY	2 cut(s)	23, 76
PsyI	GACNNNGTC	2 cut(s)	182, 265
RsaI	GTAC	1 cut(s)	997
RsaNI	GTAC	1 cut(s)	996
RseI	CAYNNNNRTG	2 cut(s)	925, 975
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	321, 345, 507, 882
SatI	GCNGC	2 cut(s)	575, 593
Sau3AI	GATC	4 cut(s)	338, 402, 664, 752
Sau96I	GGNCC	3 cut(s)	23, 76, 767
SchI	GAGTC	3 cut(s)	275, 961, 1080
ScrFI	CCNGG	1 cut(s)	1096
SduI	GDGCHC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	726
SinI	GGWCC	3 cut(s)	23, 76, 767
SmiMI	CAYNNNNRTG	2 cut(s)	925, 975
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	6 cut(s)	62, 314, 522, 728, 783, 807
SsiI	CCGC	2 cut(s)	368, 592
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	3 cut(s)	195, 240, 578
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	1094
TaaI	ACNGT	2 cut(s)	512, 767
TaqI	TCGA	2 cut(s)	159, 726
TasI	AATT	6 cut(s)	62, 314, 522, 728, 783, 807
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	2 cut(s)	421, 864
Tru1I	TTAA	4 cut(s)	321, 345, 507, 882
Tru9I	TTAA	4 cut(s)	321, 345, 507, 882
TscAI	CASTG	3 cut(s)	75, 279, 311
TseI	GCWGC	1 cut(s)	574
TspDTI	ATGAA	7 cut(s)	24, 66, 795, 833, 860, 1015, 1059
TspRI	CASTG	3 cut(s)	75, 279, 311
Tth111I	GACNNNGTC	2 cut(s)	182, 265
Van91I	CCANNNNNTGG	1 cut(s)	963
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	23, 76, 767
XapI	RAATTY	1 cut(s)	314
XspI	CTAG	3 cut(s)	195, 240, 578
Zsp2I	ATGCAT	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.