FvH4_6g08960

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009745
Physical Location & Seq
Reverse (-)
5296751 .. 5297683
933 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08960.t1

Sequence Viewer

Length: 933 bp
ATGGCCGCCAGATTGGTATCTCGCTCCGCTCTTCGCAACCAATCCAATGCACCCTTCTCCCTTCTCTTCACTAAGCTTCACTTAACCACAGTACCTCCAATCAACCCCACCCACAAACCCATCATATCTTCTTCTTCTCCCACAACAACCAGGCTTCTTCTTCTTCCTCCTCCATCATTCTCTTCTTTCCGCCTCTTCAGCTCCTCCTCACCCGCCACCAAAGGCACCACCCTCGTCAACTTCTCTCTCCCCTCCGACGACGAAGACGACACCCCACATCCCTCCAAACCAAACGACAGGTCGTCTACGTCGTCGTCGAGGTCCCTCCCTCCTCCCTACGACCCGTTCAACAAGAAGCCGGCGTTCGAAGACCCAGAAGACCCGAAAGACTTGCAAGAAGTGTTCCACAAGATGCGCTCAGACGGGCTCCAAAGCAATGCAGTCAAGATGTTCGACGCTTTGTCCAAAGACGGCCTCACCCACGAGGCCTTGGAGCTCTTCGCCCACATCAAAGACAAGGGCCAAATGCCCGACGTGGTGGCCCACACCGCCGTCATCGAGGCCTACGCCACCGCCGGGAAGCCCAAGGACGTGCTCAAGGTGTACATGCGGATGCTGGCCTGTGGGGTGGCGCCGAATGCGTATACTTATAGCGTGCTCATCAAGGCACTCGCGGCCGAGGAGAGGTTCGTCGGGGATGCGAAGAAGTATGTGGTGGAGATGTTGGGGAAGGGAATAAGGCCTAATGCCGGGACATATGTGGCGGTGTTTGAGGCGTTGGCGGGGGAGGAAAAGGCGGAGGAGGCGAGGGTGTTGTGGGAGGAGATGAGAGGGAAGGGGTTTGTGGCGGACGAGCAGGCGGTGAGGGAGGTGCTCAAGGGTAGGAGGGGAGCTGTGGTTAGAAGTGTCATCAACATTCTCTTTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Ribosomal_L15e

Protein Analysis

311

Amino Acids

33.93

Weight (kDa)

8.96

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 155 - 293 4.2e-08 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 156 - 273 4.1e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 166 - 224 3.1e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 177 - 225 7.3e-13 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 224, 631
AccBSI CCGCTC 1 cut(s) 29
AccI GTMKAC 2 cut(s) 305, 644
AccII CGCG 1 cut(s) 674
AcoI YGGCCR 2 cut(s) 3, 675
AcuI CTGAAG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 632
AfaI GTAC 2 cut(s) 93, 605
AfiI CCNNNNNNNGG 3 cut(s) 576, 684, 749
AgsI TTSAA 1 cut(s) 349
AhdI GACNNNNNGTC 2 cut(s) 301, 460
AjiI CACGTC 2 cut(s) 535, 592
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 4 cut(s) 76, 201, 496, 893
AluI AGCT 4 cut(s) 76, 201, 496, 893
Alw21I GWGCWC 4 cut(s) 498, 597, 660, 876
AoxI GGCC 9 cut(s) 3, 472, 486, 520, 540, 561, 618, 675, 740
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspLEI GCGC 2 cut(s) 417, 634
AspS9I GGNCC 3 cut(s) 321, 520, 541
AsuC2I CCSGG 2 cut(s) 577, 751
AsuHPI GGTGA 3 cut(s) 201, 469, 874
AsuII TTCGAA 1 cut(s) 366
AvaII GGWCC 1 cut(s) 321
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BanI GGYRCC 2 cut(s) 224, 631
BanII GRGCYC 2 cut(s) 429, 498
BauI CACGAG 1 cut(s) 482
BbsI GAAGAC 3 cut(s) 270, 375, 384
Bbv12I GWGCWC 4 cut(s) 498, 597, 660, 876
BccI CCATC 2 cut(s) 128, 181
BceAI ACGGC 2 cut(s) 487, 536
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 373, 407
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 2 cut(s) 577, 751
BfoI RGCGCY 1 cut(s) 635
BisI GCNGC 2 cut(s) 6, 675
BlsI GCNGC 2 cut(s) 7, 676
Bme1390I CCNGG 3 cut(s) 151, 577, 751
Bme18I GGWCC 1 cut(s) 321
BmeRI GACNNNNNGTC 2 cut(s) 301, 460
BmgBI CACGTC 2 cut(s) 535, 592
BmgT120I GGNCC 3 cut(s) 321, 520, 541
BmiI GGNNCC 4 cut(s) 226, 323, 428, 633
BmrFI CCNGG 3 cut(s) 151, 577, 751
BmsI GCATC 3 cut(s) 402, 603, 688
BpiI GAAGAC 3 cut(s) 270, 375, 384
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 581, 860
BpuMI CCSGG 2 cut(s) 577, 751
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 489, 585, 678
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 576, 684, 749
Bse118I RCCGGY 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 16
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 489, 585, 678
BseGI GGATG 3 cut(s) 277, 618, 703
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 3 cut(s) 576, 684, 749
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 7 cut(s) 159, 193, 196, 321, 695, 815, 836
BseX3I CGGCCG 1 cut(s) 675
Bsh1236I CGCG 1 cut(s) 674
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 9 cut(s) 5, 474, 488, 522, 542, 563, 620, 677, 742
BshNI GGYRCC 2 cut(s) 224, 631
BsiEI CGRYCG 1 cut(s) 678
BsiHKAI GWGCWC 4 cut(s) 498, 597, 660, 876
BsiSI CCGG 3 cut(s) 359, 576, 750
BslFI GGGAC 2 cut(s) 307, 766
BslI CCNNNNNNNGG 3 cut(s) 576, 684, 749
BsmFI GGGAC 2 cut(s) 307, 766
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 9 cut(s) 5, 474, 488, 522, 542, 563, 620, 677, 742
Bsp119I TTCGAA 1 cut(s) 366
Bsp1286I GDGCHC 5 cut(s) 429, 498, 597, 660, 876
Bsp1407I TGTACA 1 cut(s) 603
BspANI GGCC 9 cut(s) 5, 474, 488, 522, 542, 563, 620, 677, 742
BspCNI CTCAG 1 cut(s) 431
BspFNI CGCG 1 cut(s) 674
BspLI GGNNCC 4 cut(s) 226, 323, 428, 633
BspQI GCTCTTC 2 cut(s) 36, 503
BspT104I TTCGAA 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 224, 631
BsrBI CCGCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 358
BsrGI TGTACA 1 cut(s) 603
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 489, 585, 678
BssNAI GTATAC 1 cut(s) 645
BssNI GRCGYC 1 cut(s) 632
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 2 cut(s) 489, 585
Bst1107I GTATAC 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 5 cut(s) 36, 71, 187, 200, 503
BstACI GRCGYC 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 603
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 4 cut(s) 360, 618, 656, 858
BstDEI CTNAG 2 cut(s) 72, 418
BstF5I GGATG 3 cut(s) 277, 618, 703
BstFNI CGCG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 2 cut(s) 417, 634
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 5 cut(s) 198, 548, 638, 674, 803
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 149, 575, 749
BstUI CGCG 1 cut(s) 674
BstV2I GAAGAC 3 cut(s) 270, 375, 384
BstZ17I GTATAC 1 cut(s) 645
BstZI CGGCCG 1 cut(s) 675
BsuRI GGCC 9 cut(s) 5, 474, 488, 522, 542, 563, 620, 677, 742
BtrI CACGTC 2 cut(s) 535, 592
BtsCI GGATG 3 cut(s) 277, 618, 703
Cac8I GCNNGC 4 cut(s) 360, 618, 656, 858
CfoI GCGC 2 cut(s) 417, 634
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 321, 520, 541
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 92, 604
CviAII CATG 1 cut(s) 607
CviQI GTAC 2 cut(s) 92, 604
DdeI CTNAG 2 cut(s) 72, 418
DinI GGCGCC 1 cut(s) 633
DriI GACNNNNNGTC 2 cut(s) 301, 460
EaeI YGGCCR 2 cut(s) 3, 675
EagI CGGCCG 1 cut(s) 675
Eam1104I CTCTTC 5 cut(s) 36, 71, 187, 200, 503
Eam1105I GACNNNNNGTC 2 cut(s) 301, 460
EarI CTCTTC 5 cut(s) 36, 71, 187, 200, 503
EciI GGCGGA 3 cut(s) 179, 812, 863
Ecl136II GAGCTC 1 cut(s) 496
EclXI CGGCCG 1 cut(s) 675
Eco130I CCWWGG 2 cut(s) 489, 585
Eco147I AGGCCT 3 cut(s) 488, 563, 742
Eco24I GRGCYC 2 cut(s) 429, 498
Eco47I GGWCC 1 cut(s) 321
Eco52I CGGCCG 1 cut(s) 675
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 489, 585
EcoT38I GRGCYC 2 cut(s) 429, 498
EgeI GGCGCC 1 cut(s) 633
EheI GGCGCC 1 cut(s) 633
ErhI CCWWGG 2 cut(s) 489, 585
FaeI CATG 1 cut(s) 610
FaiI YATR 7 cut(s) 125, 608, 645, 651, 711, 757, 759
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FaqI GGGAC 2 cut(s) 307, 766
FatI CATG 1 cut(s) 606
FauI CCCGC 2 cut(s) 220, 775
FauNDI CATATG 1 cut(s) 757
FblI GTMKAC 2 cut(s) 305, 644
Fnu4HI GCNGC 2 cut(s) 6, 675
FokI GGATG 3 cut(s) 264, 625, 710
FriOI GRGCYC 2 cut(s) 429, 498
Fsp4HI GCNGC 2 cut(s) 6, 675
GlaI GCGC 2 cut(s) 416, 633
GluI GCNGC 2 cut(s) 6, 675
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 9 cut(s) 5, 474, 488, 522, 542, 563, 620, 677, 742
HapII CCGG 3 cut(s) 359, 576, 750
HgaI GACGC 1 cut(s) 464
HhaI GCGC 2 cut(s) 417, 634
Hin1I GRCGYC 1 cut(s) 632
Hin1II CATG 1 cut(s) 610
Hin6I GCGC 2 cut(s) 415, 632
HinP1I GCGC 2 cut(s) 415, 632
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 3 cut(s) 359, 576, 750
HphI GGTGA 3 cut(s) 201, 469, 874
Hpy166II GTNNAC 4 cut(s) 238, 306, 604, 645
Hpy188I TCNGA 2 cut(s) 256, 421
Hpy188III TCNNGA 1 cut(s) 445
Hpy8I GTNNAC 4 cut(s) 238, 306, 604, 645
Hpy99I CGWCG 8 cut(s) 260, 263, 313, 316, 319, 458, 536, 695
HpyAV CCTTC 4 cut(s) 64, 71, 724, 829
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 3 cut(s) 308, 534, 591
HpyCH4V TGCA 3 cut(s) 50, 394, 440
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 548, 638, 674, 803
HpyF3I CTNAG 2 cut(s) 72, 418
HpySE526I ACGT 3 cut(s) 308, 534, 591
Hsp92I GRCGYC 1 cut(s) 632
Hsp92II CATG 1 cut(s) 610
HspAI GCGC 2 cut(s) 415, 632
KasI GGCGCC 1 cut(s) 631
KroI GCCGGC 1 cut(s) 358
KroNI GCCGGC 1 cut(s) 360
LguI GCTCTTC 2 cut(s) 36, 503
LmnI GCTCC 5 cut(s) 29, 206, 432, 493, 890
LweI GCATC 3 cut(s) 402, 603, 688
MaeII ACGT 3 cut(s) 308, 534, 591
MbiI CCGCTC 1 cut(s) 29
MhlI GDGCHC 5 cut(s) 429, 498, 597, 660, 876
Mly113I GGCGCC 1 cut(s) 632
MmeI TCCRAC 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 358
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 3 cut(s) 359, 576, 750
MspR9I CCNGG 3 cut(s) 151, 577, 751
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 5 cut(s) 198, 548, 638, 674, 803
NaeI GCCGGC 1 cut(s) 360
NarI GGCGCC 1 cut(s) 632
NciI CCSGG 2 cut(s) 577, 751
NdeI CATATG 1 cut(s) 757
NgoMIV GCCGGC 1 cut(s) 358
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 4 cut(s) 226, 323, 428, 633
NmeAIII GCCGAG 1 cut(s) 703
NspI RCATGY 1 cut(s) 610
NspV TTCGAA 1 cut(s) 366
PceI AGGCCT 3 cut(s) 488, 563, 742
PciSI GCTCTTC 2 cut(s) 36, 503
PcsI WCGNNNNNNNCGW 3 cut(s) 264, 308, 314
PctI GAATGC 1 cut(s) 643
PdiI GCCGGC 1 cut(s) 360
PkrI GCNGC 2 cut(s) 7, 676
PluTI GGCGCC 1 cut(s) 635
PpuMI RGGWCCY 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 4 cut(s) 226, 323, 428, 633
PspPI GGNCC 3 cut(s) 321, 520, 541
PspPPI RGGWCCY 1 cut(s) 321
RsaI GTAC 2 cut(s) 93, 605
RsaNI GTAC 2 cut(s) 92, 604
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 498
SapI GCTCTTC 2 cut(s) 36, 503
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 6, 675
Sau96I GGNCC 3 cut(s) 321, 520, 541
ScrFI CCNGG 3 cut(s) 151, 577, 751
SduI GDGCHC 5 cut(s) 429, 498, 597, 660, 876
SfaNI GCATC 3 cut(s) 402, 603, 688
SfoI GGCGCC 1 cut(s) 633
SfuI TTCGAA 1 cut(s) 366
SinI GGWCC 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 596, 875
SmoI CTYRAG 2 cut(s) 596, 875
SseBI AGGCCT 3 cut(s) 488, 563, 742
SspDI GGCGCC 1 cut(s) 631
SstI GAGCTC 1 cut(s) 498
StuI AGGCCT 3 cut(s) 488, 563, 742
StyD4I CCNGG 3 cut(s) 149, 575, 749
StyI CCWWGG 2 cut(s) 489, 585
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 3 cut(s) 311, 537, 594
TaqI TCGA 4 cut(s) 317, 366, 453, 558
TatI WGTACW 1 cut(s) 603
TauI GCSGC 2 cut(s) 8, 677
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 321
XceI RCATGY 1 cut(s) 610
XmiI GTMKAC 2 cut(s) 305, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.