Rh3CG096400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009745
Physical Location & Seq
Reverse (-)
7559726 .. 7561521
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG096400.1

Sequence Viewer

Length: 921 bp
ATGGCCGCCAGATTGGTATCTCGCTCCTCTCTTCACAACCAATCCAACCCCTTCTCCCTTTTCTTCACCAAGCTTCACACCACCATAGCTCCAATCAACCACACCCACAAACTCATCTCTTTCTCTTCTTCTTCTCCTTCATCCACAACAACCCATAACAGCAGGTCTCTTCTTCCTCCGCCATCATTCTCTTCTTTTCGCCTCTTCAGCTCCTCCGAACCCAACACCAAGCGTTCCACCCTCGTCAATTTCTCTCTCCCCTCCGACGACGAAGACGACGACACCGATCAGAAACCAAACGACAAGTCGTCGTCGTCGTCCCTCCCTCCTCCCTACGACCCATTCAACAAGAAGCCGGCGATCGAAGACCCAAAAGACTTGCAGGAAGTGTTCCACAAGATGCGCACAGATGGGCTCCAAAACAATGCAGTCAAGATGTTCGACGCTTTGTCCAAGGACGGCCGCACCCACGAGGCCTTAGAGCTCTTCGCCCAGATCAAAGACAAGGGCCACATGCCCGACGTGGTGGCCCACACCGCCGTCATCGAGGCCTACGCCGCCGCCGGAAAGCCCAAGGACGCTCTCAAGGTGTACATGCGGATGTTGGCGTGTGGGGTTGCACCAAATGCCTACACTTACAGCGTGCTCATCAAGGCACTCGCTGCCGACGCCAGTTTCGTTGGGGATGCGAAGAAGTATCTGATAGAGATGATGGGGAAGGGAATGCGGCCCAATGCCGGGACGTACGTGGCGGTGTTTGAGGCGTTTGCGGCCGAGGAGAGGGTGGAGGATGGGAGGGAGTTGCTGGAGGAGATGAAAGGGAAAGGGTTTGTGGCGGACGAGCAGGCGGTGAGGGAGGTGCTCAAGGGTAGAAGAGGAGCTGTGGTTAGAAGTGTCATCAACCTTCTCTTTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Ribosomal_L15e

Protein Analysis

306

Amino Acids

33.63

Weight (kDa)

8.45

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 146 - 186 3.5e-06 PPR repeat family
PPR_long PF17177 149 - 289 1.8e-08 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 153 - 238 4e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 162 - 220 7.9e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 173 - 221 5.5e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 153
AcoI YGGCCR 3 cut(s) 3, 460, 771
AcuI CTGAAG 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 669
AfaI GTAC 2 cut(s) 593, 746
AfiI CCNNNNNNNGG 3 cut(s) 737, 738, 780
AgsI TTSAA 1 cut(s) 346
AhdI GACNNNNNGTC 2 cut(s) 307, 448
AjiI CACGTC 1 cut(s) 523
AluBI AGCT 5 cut(s) 73, 89, 210, 484, 881
AluI AGCT 5 cut(s) 73, 89, 210, 484, 881
Alw21I GWGCWC 3 cut(s) 486, 648, 864
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 8 cut(s) 3, 460, 474, 508, 528, 549, 728, 771
ApeKI GCWGC 1 cut(s) 662
ArsI GACNNNNNNTTYG 4 cut(s) 290, 322, 659, 691
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 3 cut(s) 508, 529, 729
AsuC2I CCSGG 1 cut(s) 739
AsuHPI GGTGA 2 cut(s) 58, 862
BanII GRGCYC 2 cut(s) 417, 486
BauI CACGAG 1 cut(s) 470
BbsI GAAGAC 2 cut(s) 279, 372
Bbv12I GWGCWC 3 cut(s) 486, 648, 864
BbvI GCAGC 1 cut(s) 649
BccI CCATC 4 cut(s) 190, 404, 706, 785
BceAI ACGGC 2 cut(s) 475, 524
BcnI CCSGG 1 cut(s) 739
BcoDI GTCTC 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 7 cut(s) 6, 463, 558, 561, 663, 728, 771
BlsI GCNGC 7 cut(s) 7, 464, 559, 562, 664, 729, 772
Bme1390I CCNGG 1 cut(s) 739
BmeRI GACNNNNNGTC 2 cut(s) 307, 448
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 3 cut(s) 508, 529, 729
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 2 cut(s) 390, 676
BpiI GAAGAC 2 cut(s) 279, 372
BpmI CTGGAG 1 cut(s) 827
BpuEI CTTGAG 2 cut(s) 569, 848
BpuMI CCSGG 1 cut(s) 739
BsaAI YACGTR 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 453, 573, 774
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 73, 103, 870, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 737, 738, 780
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 453, 573, 774
BseGI GGATG 4 cut(s) 140, 606, 691, 796
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 3 cut(s) 737, 738, 780
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 6 cut(s) 16, 202, 318, 791, 824, 891
BseX3I CGGCCG 2 cut(s) 460, 771
BseXI GCAGC 1 cut(s) 649
Bsh1285I CGRYCG 3 cut(s) 363, 463, 774
BshFI GGCC 8 cut(s) 5, 462, 476, 510, 530, 551, 730, 773
BsiEI CGRYCG 3 cut(s) 363, 463, 774
BsiHKAI GWGCWC 3 cut(s) 486, 648, 864
BsiSI CCGG 3 cut(s) 356, 564, 738
BsiWI CGTACG 1 cut(s) 744
BslFI GGGAC 2 cut(s) 304, 754
BslI CCNNNNNNNGG 3 cut(s) 737, 738, 780
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 304, 754
BsmI GAATGC 1 cut(s) 729
BsnI GGCC 8 cut(s) 5, 462, 476, 510, 530, 551, 730, 773
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 4 cut(s) 417, 486, 648, 864
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 3 cut(s) 286, 360, 495
BspANI GGCC 8 cut(s) 5, 462, 476, 510, 530, 551, 730, 773
BspLI GGNNCC 1 cut(s) 416
BspMI ACCTGC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 591
BsrI ACTGG 1 cut(s) 672
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 453, 573, 774
BssMI GATC 3 cut(s) 286, 360, 495
BssNI GRCGYC 1 cut(s) 669
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 453, 573
Bst2BI CACGAG 1 cut(s) 470
Bst6I CTCTTC 7 cut(s) 36, 130, 174, 196, 209, 491, 868
BstACI GRCGYC 1 cut(s) 669
BstAPI GCANNNNNTGC 2 cut(s) 626, 662
BstAUI TGTACA 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 3 cut(s) 357, 644, 846
BstDEI CTNAG 1 cut(s) 478
BstF5I GGATG 4 cut(s) 140, 606, 691, 796
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 3 cut(s) 289, 363, 498
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 3 cut(s) 286, 360, 495
BstMCI CGRYCG 3 cut(s) 363, 463, 774
BstMWI GCNNNNNNNGC 7 cut(s) 207, 536, 557, 626, 662, 668, 770
BstNSI RCATGY 2 cut(s) 517, 598
BstSCI CCNGG 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 2 cut(s) 279, 372
BstZI CGGCCG 2 cut(s) 460, 771
BsuRI GGCC 8 cut(s) 5, 462, 476, 510, 530, 551, 730, 773
BtrI CACGTC 1 cut(s) 523
BtsCI GGATG 4 cut(s) 140, 606, 691, 796
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 3 cut(s) 357, 644, 846
CfoI GCGC 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 508, 529, 729
CseI GACGC 3 cut(s) 452, 587, 677
Csp6I GTAC 2 cut(s) 592, 745
CviAII CATG 2 cut(s) 514, 595
CviQI GTAC 2 cut(s) 592, 745
DdeI CTNAG 1 cut(s) 478
DpnI GATC 3 cut(s) 288, 362, 497
DpnII GATC 3 cut(s) 286, 360, 495
DriI GACNNNNNGTC 2 cut(s) 307, 448
EaeI YGGCCR 3 cut(s) 3, 460, 771
EagI CGGCCG 2 cut(s) 460, 771
Eam1104I CTCTTC 7 cut(s) 36, 130, 174, 196, 209, 491, 868
Eam1105I GACNNNNNGTC 2 cut(s) 307, 448
EarI CTCTTC 7 cut(s) 36, 130, 174, 196, 209, 491, 868
EciI GGCGGA 2 cut(s) 168, 851
Ecl136II GAGCTC 1 cut(s) 484
EclXI CGGCCG 2 cut(s) 460, 771
Eco130I CCWWGG 2 cut(s) 453, 573
Eco147I AGGCCT 2 cut(s) 476, 551
Eco24I GRGCYC 2 cut(s) 417, 486
Eco31I GGTCTC 1 cut(s) 171
Eco52I CGGCCG 2 cut(s) 460, 771
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 453, 573
EcoT38I GRGCYC 2 cut(s) 417, 486
ErhI CCWWGG 2 cut(s) 453, 573
FaeI CATG 2 cut(s) 517, 598
FaiI YATR 4 cut(s) 86, 156, 515, 596
FaqI GGGAC 2 cut(s) 304, 754
FatI CATG 2 cut(s) 513, 594
Fnu4HI GCNGC 7 cut(s) 6, 463, 558, 561, 663, 728, 771
FokI GGATG 4 cut(s) 127, 613, 698, 803
FriOI GRGCYC 2 cut(s) 417, 486
Fsp4HI GCNGC 7 cut(s) 6, 463, 558, 561, 663, 728, 771
FspAI RTGCGCAY 1 cut(s) 404
FspI TGCGCA 1 cut(s) 404
GlaI GCGC 1 cut(s) 404
GluI GCNGC 7 cut(s) 6, 463, 558, 561, 663, 728, 771
GsuI CTGGAG 1 cut(s) 827
HaeIII GGCC 8 cut(s) 5, 462, 476, 510, 530, 551, 730, 773
HapII CCGG 3 cut(s) 356, 564, 738
HgaI GACGC 3 cut(s) 452, 587, 677
HhaI GCGC 1 cut(s) 405
Hin1I GRCGYC 1 cut(s) 669
Hin1II CATG 2 cut(s) 517, 598
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 71
HpaII CCGG 3 cut(s) 356, 564, 738
HphI GGTGA 2 cut(s) 58, 862
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 4 cut(s) 217, 265, 291, 702
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 1 cut(s) 592
Hpy99I CGWCG 9 cut(s) 269, 272, 281, 313, 316, 319, 446, 524, 671
HpyAV CCTTC 4 cut(s) 61, 147, 712, 914
HpyCH4IV ACGT 3 cut(s) 522, 743, 747
HpyCH4V TGCA 3 cut(s) 382, 428, 620
HpyF10VI GCNNNNNNNGC 7 cut(s) 207, 536, 557, 626, 662, 668, 770
HpyF3I CTNAG 1 cut(s) 478
HpySE526I ACGT 3 cut(s) 522, 743, 747
Hsp92I GRCGYC 1 cut(s) 669
Hsp92II CATG 2 cut(s) 517, 598
HspAI GCGC 1 cut(s) 403
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 286, 360, 495
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 5 cut(s) 29, 94, 215, 420, 878
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 2 cut(s) 390, 676
MaeII ACGT 3 cut(s) 522, 743, 747
MalI GATC 3 cut(s) 288, 362, 497
MboI GATC 3 cut(s) 286, 360, 495
MhlI GDGCHC 4 cut(s) 417, 486, 648, 864
MluCI AATT 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 69, 288
MroNI GCCGGC 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 3 cut(s) 356, 564, 738
MspR9I CCNGG 1 cut(s) 739
Mva1269I GAATGC 1 cut(s) 729
MwoI GCNNNNNNNGC 7 cut(s) 207, 536, 557, 626, 662, 668, 770
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 739
NdeII GATC 3 cut(s) 286, 360, 495
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 517, 598
NlaIV GGNNCC 1 cut(s) 416
NmeAIII GCCGAG 1 cut(s) 799
NsbI TGCGCA 1 cut(s) 404
NspI RCATGY 2 cut(s) 517, 598
PceI AGGCCT 2 cut(s) 476, 551
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 5 cut(s) 273, 276, 282, 314, 675
PctI GAATGC 1 cut(s) 729
PdiI GCCGGC 1 cut(s) 357
Pfl23II CGTACG 1 cut(s) 744
PkrI GCNGC 7 cut(s) 7, 464, 559, 562, 664, 729, 772
Ple19I CGATCG 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 486
PspLI CGTACG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 3 cut(s) 508, 529, 729
PvuI CGATCG 1 cut(s) 363
RsaI GTAC 2 cut(s) 593, 746
RsaNI GTAC 2 cut(s) 592, 745
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 491
SatI GCNGC 7 cut(s) 6, 463, 558, 561, 663, 728, 771
Sau3AI GATC 3 cut(s) 286, 360, 495
Sau96I GGNCC 3 cut(s) 508, 529, 729
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 4 cut(s) 417, 486, 648, 864
SfaNI GCATC 2 cut(s) 390, 676
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 584, 863
SmoI CTYRAG 2 cut(s) 584, 863
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 2 cut(s) 476, 551
SstI GAGCTC 1 cut(s) 486
StuI AGGCCT 2 cut(s) 476, 551
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 2 cut(s) 453, 573
TaiI ACGT 3 cut(s) 525, 746, 750
TaqI TCGA 3 cut(s) 363, 441, 546
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 591
TauI GCSGC 6 cut(s) 8, 465, 560, 563, 730, 773
TseI GCWGC 1 cut(s) 662
TspDTI ATGAA 2 cut(s) 129, 830
XceI RCATGY 2 cut(s) 517, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.