Rh3BG095200

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
7591806 .. 7597975
6170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG095200.1

Sequence Viewer

Length: 1119 bp
ATGGCCGCCAGATTGGTATCTCGCTCCTCACTTCACAACCAATCCAATCCCTTCTCCCTTTTCTTCACCAAGCTTCACACAACCACAGCTCCAATCAACCACACCCACAAACTCATCTCTTTCTCTTCTTCTTCTCCTTCATCCACAACAACCCATAACAGCAGGTCTCTTCTTCCTCCGCCATCATTCTCTTCTTTTCGCCTCTTCAGCTCCTCCGAACCCAACACCAAGCGTTCCACCCTCGTCAATTTTTCTCTCCCCTCCGACGACGAAGACGACGACGCCGATCAGAAACCAAACGACAAGTCGTCGTCGTCCCTCCCTCCTCCCTACGACCCATTCAACAAGAAGCCGGCGATCGAAGACCCAGAAGACCCAAAAGACTTGCAGGAAGTGTTCCACAAGATGCGCACAGATGGGCTCCAAAACAATGCAGTCAAGATGTTCGACGCTTTGTCCAAGGACGGCCTCACCCACGAGGCCTTAGAGCTCTTCGCCCAGATCAAAGACAAGGGCCACATGCCCGACGTGGTGGCCCACACCGCCGTCATCGAGGCCTACGCCGCCGCCGGAAAGCCCAAGGACGCTCTCAAGGTTGACTTCACCGGCGCCGGAAGCTCAGGCGGAAAAGACGACGACAAGCCTATACTGACCTTGGGCACGGCCAAGCTCAAAGTCGACGAGGAAAACAAAACAGCCACCTTCATAGTCGACCAGTCCAAGCTCCCTGCTCGTCCCTACAGCTCCAAGCCCGAACCGATCACCGTGGGCCCGGAAGACCCTACGGACTTGCGACTAGTCTTCCAGAAGGTGGAGACCACCGAAGGCATCATCAACAATGTGGTCAAGATGTTCGACGCTCTACTCACAAAAGGCCACGAGCGCGAGGCTGCGGAGATGCATGCTCAGATCGACCAGGGTTTCATGCCGGAGGTGGTGACCTACACCGGCGTCATGGAGGAGTACGCCGGCGCCGGCAAGACAGTGGACGTTCTCAAGGAGATCAAGAAAGCTATGGGGATTGATCAGGGTGACGAGAAGGATCTTAGAGGAAGCAGGAAAAGACCTCCGGTGGTTAGAAGAATTTTCAAGATTCTCGTTGGCAAGAAGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

372

Amino Acids

40.87

Weight (kDa)

6.15

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 2 cut(s) 608, 971
AccB7I CCANNNNNTGG 1 cut(s) 811
AccI GTMKAC 2 cut(s) 678, 711
AccII CGCG 1 cut(s) 885
AciI CCGC 7 cut(s) 6, 179, 543, 564, 567, 624, 893
AclWI GGATC 1 cut(s) 1050
AcoI YGGCCR 2 cut(s) 3, 663
AcsI RAATTY 1 cut(s) 1083
AcuI CTGAAG 1 cut(s) 190
AcyI GRCGYC 4 cut(s) 282, 609, 951, 972
AfaI GTAC 1 cut(s) 965
AfiI CCNNNNNNNGG 1 cut(s) 811
AgsI TTSAA 2 cut(s) 343, 1090
AhdI GACNNNNNGTC 2 cut(s) 307, 454
AhlI ACTAGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 529
AjnI CCWGG 1 cut(s) 915
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 171, 809
AlwI GGATC 1 cut(s) 1050
AoxI GGCC 9 cut(s) 3, 466, 480, 514, 534, 555, 663, 769, 874
ApaI GGGCCC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 890
ApoI RAATTY 1 cut(s) 1083
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 4 cut(s) 411, 611, 885, 974
AspS9I GGNCC 4 cut(s) 514, 535, 769, 770
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 6 cut(s) 58, 463, 595, 754, 949, 1043
BaeGI GKGCMC 2 cut(s) 662, 773
BanI GGYRCC 2 cut(s) 608, 971
BanII GRGCYC 3 cut(s) 423, 492, 773
BauI CACGAG 2 cut(s) 476, 878
BbsI GAAGAC 5 cut(s) 279, 369, 378, 783, 793
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 877
BccI CCATC 2 cut(s) 190, 410
BceAI ACGGC 3 cut(s) 481, 530, 678
BciT130I CCWGG 1 cut(s) 917
BclI TGATCA 1 cut(s) 1024
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 171, 809
BcuI ACTAGT 1 cut(s) 796
BfaI CTAG 1 cut(s) 797
BfmI CTRYAG 1 cut(s) 739
BfoI RGCGCY 2 cut(s) 612, 975
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 4 cut(s) 6, 564, 567, 891
BlsI GCNGC 4 cut(s) 7, 565, 568, 892
Bme1390I CCNGG 2 cut(s) 773, 917
BmeRI GACNNNNNGTC 2 cut(s) 307, 454
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 4 cut(s) 514, 535, 769, 770
BmiI GGNNCC 4 cut(s) 422, 610, 771, 973
BmrFI CCNGG 2 cut(s) 773, 917
BmsI GCATC 3 cut(s) 396, 837, 888
BpiI GAAGAC 5 cut(s) 279, 369, 378, 783, 793
Bpu10I CCTNAGC 1 cut(s) 619
BpuEI CTTGAG 2 cut(s) 575, 980
BpuMI CCSGG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 4 cut(s) 282, 609, 951, 972
BsaI GGTCTC 2 cut(s) 171, 809
BsaJI CCNNGG 5 cut(s) 459, 579, 654, 765, 916
BsaWI WCCGGW 1 cut(s) 1069
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 811
Bse118I RCCGGY 5 cut(s) 352, 605, 947, 968, 974
Bse1I ACTGG 1 cut(s) 715
Bse8I GATNNNNATC 1 cut(s) 16
BseBI CCWGG 1 cut(s) 917
BseDI CCNNGG 5 cut(s) 459, 579, 654, 765, 916
BseGI GGATG 1 cut(s) 140
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 811
BseMII CTCAG 2 cut(s) 633, 920
BseNI ACTGG 1 cut(s) 715
BseRI GAGGAG 4 cut(s) 16, 202, 315, 974
BseSI GKGCMC 2 cut(s) 662, 773
BseXI GCAGC 1 cut(s) 877
Bsh1236I CGCG 1 cut(s) 885
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 9 cut(s) 5, 468, 482, 516, 536, 557, 665, 771, 876
BshNI GGYRCC 2 cut(s) 608, 971
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 492
BslFI GGGAC 2 cut(s) 301, 720
BslI CCNNNNNNNGG 1 cut(s) 811
BsmAI GTCTC 2 cut(s) 171, 809
BsmFI GGGAC 2 cut(s) 301, 720
BsnI GGCC 9 cut(s) 5, 468, 482, 516, 536, 557, 665, 771, 876
Bso31I GGTCTC 2 cut(s) 171, 809
Bsp120I GGGCCC 1 cut(s) 769
Bsp1286I GDGCHC 4 cut(s) 423, 492, 662, 773
Bsp143I GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
BspACI CCGC 7 cut(s) 6, 179, 543, 564, 567, 624, 893
BspANI GGCC 9 cut(s) 5, 468, 482, 516, 536, 557, 665, 771, 876
BspCNI CTCAG 2 cut(s) 632, 919
BspFNI CGCG 1 cut(s) 885
BspLI GGNNCC 4 cut(s) 422, 610, 771, 973
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 1 cut(s) 1050
BspQI GCTCTTC 1 cut(s) 497
BspT107I GGYRCC 2 cut(s) 608, 971
BspTNI GGTCTC 2 cut(s) 171, 809
BsrFI RCCGGY 5 cut(s) 352, 605, 947, 968, 974
BsrI ACTGG 1 cut(s) 715
BssAI RCCGGY 5 cut(s) 352, 605, 947, 968, 974
BssECI CCNNGG 5 cut(s) 459, 579, 654, 765, 916
BssMI GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
BssNI GRCGYC 4 cut(s) 282, 609, 951, 972
BssSI CACGAG 2 cut(s) 476, 878
BssT1I CCWWGG 3 cut(s) 459, 579, 654
Bst2BI CACGAG 2 cut(s) 476, 878
Bst2UI CCWGG 1 cut(s) 917
Bst4CI ACNGT 2 cut(s) 766, 985
Bst6I CTCTTC 5 cut(s) 130, 174, 196, 209, 497
BstACI GRCGYC 4 cut(s) 282, 609, 951, 972
BstC8I GCNNGC 4 cut(s) 354, 903, 970, 976
BstDEI CTNAG 4 cut(s) 484, 619, 906, 1046
BstDSI CCRYGG 1 cut(s) 765
BstEII GGTNACC 1 cut(s) 937
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 885
BstH2I RGCGCY 2 cut(s) 612, 975
BstHHI GCGC 4 cut(s) 411, 611, 885, 974
BstKTI GATC 8 cut(s) 289, 360, 504, 762, 912, 1005, 1027, 1045
BstMAI GTCTC 2 cut(s) 171, 809
BstMBI GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 5 cut(s) 207, 542, 563, 615, 882
BstNI CCWGG 1 cut(s) 917
BstNSI RCATGY 2 cut(s) 523, 905
BstPI GGTNACC 1 cut(s) 937
BstSCI CCNGG 2 cut(s) 771, 915
BstSFI CTRYAG 1 cut(s) 739
BstSLI GKGCMC 2 cut(s) 662, 773
BstUI CGCG 1 cut(s) 885
BstV1I GCAGC 1 cut(s) 877
BstV2I GAAGAC 5 cut(s) 279, 369, 378, 783, 793
BstX2I RGATCY 1 cut(s) 1042
BstYI RGATCY 1 cut(s) 1042
BsuRI GGCC 9 cut(s) 5, 468, 482, 516, 536, 557, 665, 771, 876
BtgI CCRYGG 1 cut(s) 765
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 990
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 4 cut(s) 354, 903, 970, 976
CfoI GCGC 4 cut(s) 411, 611, 885, 974
Cfr10I RCCGGY 5 cut(s) 352, 605, 947, 968, 974
Cfr13I GGNCC 4 cut(s) 514, 535, 769, 770
CseI GACGC 5 cut(s) 290, 458, 593, 866, 940
Csp6I GTAC 1 cut(s) 964
CviAII CATG 4 cut(s) 520, 902, 925, 955
CviQI GTAC 1 cut(s) 964
DdeI CTNAG 4 cut(s) 484, 619, 906, 1046
DinI GGCGCC 2 cut(s) 610, 973
DpnI GATC 8 cut(s) 288, 359, 503, 761, 911, 1004, 1026, 1044
DpnII GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
DriI GACNNNNNGTC 2 cut(s) 307, 454
EaeI YGGCCR 2 cut(s) 3, 663
Eam1104I CTCTTC 5 cut(s) 130, 174, 196, 209, 497
Eam1105I GACNNNNNGTC 2 cut(s) 307, 454
EarI CTCTTC 5 cut(s) 130, 174, 196, 209, 497
EciI GGCGGA 2 cut(s) 168, 639
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 3 cut(s) 459, 579, 654
Eco147I AGGCCT 2 cut(s) 482, 557
Eco24I GRGCYC 3 cut(s) 423, 492, 773
Eco31I GGTCTC 2 cut(s) 171, 809
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 190
Eco91I GGTNACC 1 cut(s) 937
EcoICRI GAGCTC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 937
EcoRII CCWGG 1 cut(s) 915
EcoT14I CCWWGG 3 cut(s) 459, 579, 654
EcoT22I ATGCAT 1 cut(s) 903
EcoT38I GRGCYC 3 cut(s) 423, 492, 773
EgeI GGCGCC 2 cut(s) 610, 973
EheI GGCGCC 2 cut(s) 610, 973
ErhI CCWWGG 3 cut(s) 459, 579, 654
FaeI CATG 4 cut(s) 523, 905, 928, 958
FaiI YATR 8 cut(s) 156, 521, 647, 707, 903, 926, 956, 1016
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FaqI GGGAC 2 cut(s) 301, 720
FatI CATG 4 cut(s) 519, 901, 924, 954
FbaI TGATCA 1 cut(s) 1024
FblI GTMKAC 2 cut(s) 678, 711
Fnu4HI GCNGC 4 cut(s) 6, 564, 567, 891
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 3 cut(s) 423, 492, 773
Fsp4HI GCNGC 4 cut(s) 6, 564, 567, 891
FspAI RTGCGCAY 1 cut(s) 410
FspBI CTAG 1 cut(s) 797
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 4 cut(s) 410, 610, 884, 973
GluI GCNGC 4 cut(s) 6, 564, 567, 891
HaeII RGCGCY 2 cut(s) 612, 975
HaeIII GGCC 9 cut(s) 5, 468, 482, 516, 536, 557, 665, 771, 876
HgaI GACGC 5 cut(s) 290, 458, 593, 866, 940
HhaI GCGC 4 cut(s) 411, 611, 885, 974
Hin1I GRCGYC 4 cut(s) 282, 609, 951, 972
Hin1II CATG 4 cut(s) 523, 905, 928, 958
Hin6I GCGC 4 cut(s) 409, 609, 883, 972
HinP1I GCGC 4 cut(s) 409, 609, 883, 972
HincII GTYRAC 3 cut(s) 598, 679, 712
HindII GTYRAC 3 cut(s) 598, 679, 712
HindIII AAGCTT 2 cut(s) 71, 1109
HinfI GANTC 1 cut(s) 1093
HphI GGTGA 6 cut(s) 58, 463, 595, 754, 949, 1043
Hpy166II GTNNAC 4 cut(s) 598, 679, 712, 988
Hpy188I TCNGA 4 cut(s) 217, 265, 291, 909
Hpy188III TCNNGA 5 cut(s) 439, 805, 847, 1006, 1090
Hpy8I GTNNAC 4 cut(s) 598, 679, 712, 988
HpyAV CCTTC 6 cut(s) 61, 147, 712, 802, 818, 1033
HpyCH4III ACNGT 2 cut(s) 766, 985
HpyCH4IV ACGT 2 cut(s) 528, 990
HpyCH4V TGCA 3 cut(s) 388, 434, 901
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 542, 563, 615, 882
HpyF3I CTNAG 4 cut(s) 484, 619, 906, 1046
HpySE526I ACGT 2 cut(s) 528, 990
Hsp92I GRCGYC 4 cut(s) 282, 609, 951, 972
Hsp92II CATG 4 cut(s) 523, 905, 928, 958
HspAI GCGC 4 cut(s) 409, 609, 883, 972
KasI GGCGCC 2 cut(s) 608, 971
KroI GCCGGC 3 cut(s) 352, 968, 974
KroNI GCCGGC 3 cut(s) 354, 970, 976
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 6 cut(s) 29, 94, 215, 426, 729, 749
Lsp1109I GCAGC 1 cut(s) 877
LweI GCATC 3 cut(s) 396, 837, 888
MaeI CTAG 1 cut(s) 797
MaeII ACGT 2 cut(s) 528, 990
MaeIII GTNAC 2 cut(s) 937, 1031
MalI GATC 8 cut(s) 288, 359, 503, 761, 911, 1004, 1026, 1044
MboI GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
MflI RGATCY 1 cut(s) 1042
MhlI GDGCHC 4 cut(s) 423, 492, 662, 773
MluCI AATT 2 cut(s) 247, 1083
Mly113I GGCGCC 2 cut(s) 609, 972
MmeI TCCRAC 1 cut(s) 288
Mph1103I ATGCAT 1 cut(s) 903
MreI CGCCGGCG 1 cut(s) 968
MroNI GCCGGC 3 cut(s) 352, 968, 974
MseI TTAA 1 cut(s) 1117
MspR9I CCNGG 2 cut(s) 773, 917
MvaI CCWGG 1 cut(s) 917
MvnI CGCG 1 cut(s) 885
MwoI GCNNNNNNNGC 5 cut(s) 207, 542, 563, 615, 882
NaeI GCCGGC 3 cut(s) 354, 970, 976
NarI GGCGCC 2 cut(s) 609, 972
NciI CCSGG 1 cut(s) 773
NdeII GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
NgoMIV GCCGGC 3 cut(s) 352, 968, 974
NlaIII CATG 4 cut(s) 523, 905, 928, 958
NlaIV GGNNCC 4 cut(s) 422, 610, 771, 973
NmuCI GTSAC 2 cut(s) 937, 1031
NsbI TGCGCA 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 2 cut(s) 523, 905
PaeI GCATGC 1 cut(s) 905
PceI AGGCCT 2 cut(s) 482, 557
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 3 cut(s) 273, 276, 282
PdiI GCCGGC 3 cut(s) 354, 970, 976
PfeI GAWTC 1 cut(s) 1093
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 4 cut(s) 7, 565, 568, 892
Ple19I CGATCG 1 cut(s) 360
PluTI GGCGCC 2 cut(s) 612, 975
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 915
PspEI GGTNACC 1 cut(s) 937
PspGI CCWGG 1 cut(s) 915
PspN4I GGNNCC 4 cut(s) 422, 610, 771, 973
PspOMI GGGCCC 1 cut(s) 769
PspPI GGNCC 4 cut(s) 514, 535, 769, 770
PsuI RGATCY 1 cut(s) 1042
PvuI CGATCG 1 cut(s) 360
RsaI GTAC 1 cut(s) 965
RsaNI GTAC 1 cut(s) 964
SacI GAGCTC 1 cut(s) 492
SalI GTCGAC 2 cut(s) 677, 710
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 1 cut(s) 1117
SatI GCNGC 4 cut(s) 6, 564, 567, 891
Sau3AI GATC 8 cut(s) 286, 357, 501, 759, 909, 1002, 1024, 1042
Sau96I GGNCC 4 cut(s) 514, 535, 769, 770
ScrFI CCNGG 2 cut(s) 773, 917
SduI GDGCHC 4 cut(s) 423, 492, 662, 773
SfaNI GCATC 3 cut(s) 396, 837, 888
SfcI CTRYAG 1 cut(s) 739
SfoI GGCGCC 2 cut(s) 610, 973
SgrAI CRCCGGYG 3 cut(s) 605, 947, 968
SmlI CTYRAG 2 cut(s) 590, 995
SmoI CTYRAG 2 cut(s) 590, 995
SpeI ACTAGT 1 cut(s) 796
SphI GCATGC 1 cut(s) 905
Sse9I AATT 2 cut(s) 247, 1083
SseBI AGGCCT 2 cut(s) 482, 557
SsiI CCGC 7 cut(s) 6, 179, 543, 564, 567, 624, 893
SspDI GGCGCC 2 cut(s) 608, 971
SspMI CTAG 1 cut(s) 797
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 2 cut(s) 482, 557
StyD4I CCNGG 2 cut(s) 771, 915
StyI CCWWGG 3 cut(s) 459, 579, 654
TaaI ACNGT 2 cut(s) 766, 985
TaiI ACGT 2 cut(s) 531, 993
TaqI TCGA 7 cut(s) 360, 447, 552, 678, 711, 855, 912
TasI AATT 2 cut(s) 247, 1083
TauI GCSGC 3 cut(s) 8, 566, 569
TfiI GAWTC 1 cut(s) 1093
Tru1I TTAA 1 cut(s) 1117
Tru9I TTAA 1 cut(s) 1117
TscAI CASTG 1 cut(s) 990
TseFI GTSAC 2 cut(s) 937, 1031
TseI GCWGC 1 cut(s) 890
Tsp45I GTSAC 2 cut(s) 937, 1031
TspDTI ATGAA 3 cut(s) 129, 694, 913
TspGWI ACGGA 1 cut(s) 800
TspRI CASTG 1 cut(s) 990
Van91I CCANNNNNTGG 1 cut(s) 811
XapI RAATTY 1 cut(s) 1083
XceI RCATGY 2 cut(s) 523, 905
XmiI GTMKAC 2 cut(s) 678, 711
XspI CTAG 1 cut(s) 797
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.