Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009745

Physical Location & Seq

Genomic Coordinates Forward (+)

52169107 .. 52169632

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG222500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTTTGCTCGGAGTCTGAGTTCGCTCTACCGCTCAGGCAGGTCTATCGCCGTCAGCAAGCAGCTGCTCACTCACCCGCCACGTCAGCACTACTTCTCTTACTCCACCGGCGTTGCTGCTCGAACAACCCTCCTCAACTTCTCATCTCCGATGGCCAAGCACCTCTCTTCCGATGATCATGGGTCCCCTCTTTCAAGGGGTTTGGGAAGTAGGAGACTTTTACGTGGTGAGAGTTGCAGCAAAGATTATGACGTATATATATGTACAGCATATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

92

Amino Acids

10.22

Weight (kDa)

9.93

Isoelectric Point (pI)

66.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03560 AT5G03560 AT5G03560
fragaria_vesca	FvH4_6g08960
malus_domestica	MD04G1183300.v1.1 MD12G1196700.v1.1
prunus_persica	Prupe.6G301800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459231
rosa_laevigata	RLG00000025101
rosa_multiflora	Rmu_co8389667.1_g000001 Rmu_sc0002435.1_g000010 Rmu_sc0002435.1_g000012 Rmu_sc0015160.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420390
rosa_rugosa	Rorug03G0034400.1
rosa_samantha	Rh3BG095200 Rh3BG301800 Rh3CG096400 Rh3DG096100 Rh4AG222500
rosa_wichuraiana	Rw3G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccBSI	CCGCTC	1 cut(s)	33
AciI	CCGC	2 cut(s)	31, 77
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	195
AjiI	CACGTC	1 cut(s)	83
AloI	GAACNNNNNNTCC	1 cut(s)	36
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	61, 64, 116, 237
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	65, 239
AvaII	GGWCC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	51, 73, 103, 249
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	4 cut(s)	62, 65, 117, 238
BlsI	GCNGC	4 cut(s)	63, 66, 118, 239
Bme18I	GGWCC	1 cut(s)	183
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	184, 185
Bpu10I	CCTNAGC	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	224
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	8, 48
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	51, 73, 103, 249
BshFI	GGCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	155
Bsp1407I	TGTACA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	2 cut(s)	31, 77
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	9, 47
BspLI	GGNNCC	2 cut(s)	184, 185
BspMI	ACCTGC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	17, 34
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	51, 73, 103, 249
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	264
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	2 cut(s)	64, 155
CviKI_1	RGCY	2 cut(s)	64, 155
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	17, 34
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	183
FaeI	CATG	1 cut(s)	182
FaiI	YATR	8 cut(s)	180, 249, 256, 258, 260, 262, 271, 273
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	4 cut(s)	62, 65, 117, 238
Fsp4HI	GCNGC	4 cut(s)	62, 65, 117, 238
GluI	GCNGC	4 cut(s)	62, 65, 117, 238
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	65, 239
Hpy188I	TCNGA	4 cut(s)	12, 18, 150, 172
HpyCH4IV	ACGT	3 cut(s)	82, 223, 252
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	17, 34
HpySE526I	ACGT	3 cut(s)	82, 223, 252
Hsp92II	CATG	1 cut(s)	182
KflI	GGGWCCC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	3 cut(s)	21, 25, 121
Lsp1109I	GCAGC	4 cut(s)	51, 73, 103, 249
MaeII	ACGT	3 cut(s)	82, 223, 252
MalI	GATC	1 cut(s)	177
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	4 cut(s)	140, 143, 173, 198
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	2 cut(s)	184, 185
PkrI	GCNGC	4 cut(s)	63, 66, 118, 239
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	184, 185
PspPI	GGNCC	1 cut(s)	183
PspPPI	RGGWCCY	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SatI	GCNGC	4 cut(s)	62, 65, 117, 238
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	22
SetI	ASST	6 cut(s)	44, 66, 85, 165, 226, 255
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	183
SsiI	CCGC	2 cut(s)	31, 77
TaiI	ACGT	3 cut(s)	85, 226, 255
TaqI	TCGA	1 cut(s)	121
TatI	WGTACW	1 cut(s)	263
TseI	GCWGC	4 cut(s)	61, 64, 116, 237
VpaK11BI	GGWCC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.