Rmu_sc0015160.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015160.1
OG0009745
Physical Location & Seq
Reverse (-)
999 .. 1925
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015160.1_g000001.1.cds

Sequence Viewer

Length: 927 bp
atggccgccagattggtatctcgctcctctcttcacaaccaatccaatcccttctcccttttcttcaccaagcttcacacaaccacagctccaatcaaccacacccacaaactcatctctttctcttcttcttctccttcatccacaacaacccataacagcaggtctcttcttcctccgccaccattctcttcttttcgcctcttcagctcctccgaacccaacaccaagcgttccaccctcgtcaatttctctctcccctccgacgacgaagacgacgacgccgatcggaaaccaaacgacaagtcgtcgtcgtccctccctcctccctacgacccattcaacaagaagccggcgatcgaagacccagaagacccaaaagacttgcaggaagtgttccacaagatgcgcacagatgggctccaaaacaatgcagtcaagatgttcgacgctttgtccaaggacggcctcacccacgaggccttagagctcttcgcccagatcaaagacaagggccacatgcccgacgtggtggcccacaccgccgtcatcgaggcctacgccgccgccggaaagcccaaggacgctctcaaggtgtacatgcggatgttggcgtgtggggttgcaccaaatgcctacacttatagcgtgctcatcaaggcactcgctgccgacgccagtttcgttggggatgcgaagaagtatctgatagagatgatggggaagggaatgcggcccaatgccgggacgtgcgtggcggtgtttgaggcgtttgcggccgaggagagggtggaggatgggagggagttgctggaggagatgaaagggaaagggtttgtggcggacgagcaggcggtgagggaggtgctcaagggtagaagaggagctgtggttagaagtgtcatcaaccttctctttggaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Ribosomal_L15e

Protein Analysis

308

Amino Acids

33.78

Weight (kDa)

7.13

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 153
AcoI YGGCCR 2 cut(s) 3, 777
AcuI CTGAAG 1 cut(s) 190
AcyI GRCGYC 2 cut(s) 282, 675
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 3 cut(s) 743, 744, 786
AgsI TTSAA 1 cut(s) 343
AhdI GACNNNNNGTC 2 cut(s) 307, 454
AjiI CACGTC 2 cut(s) 529, 750
AluBI AGCT 5 cut(s) 73, 89, 210, 490, 887
AluI AGCT 5 cut(s) 73, 89, 210, 490, 887
Alw21I GWGCWC 3 cut(s) 492, 654, 870
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 8 cut(s) 3, 466, 480, 514, 534, 555, 734, 777
ApeKI GCWGC 1 cut(s) 668
ArsI GACNNNNNNTTYG 4 cut(s) 290, 322, 665, 697
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 3 cut(s) 514, 535, 735
AsuC2I CCSGG 1 cut(s) 745
AsuHPI GGTGA 3 cut(s) 58, 463, 868
BanII GRGCYC 2 cut(s) 423, 492
BauI CACGAG 1 cut(s) 476
BbsI GAAGAC 3 cut(s) 279, 369, 378
Bbv12I GWGCWC 3 cut(s) 492, 654, 870
BbvI GCAGC 1 cut(s) 655
BccI CCATC 3 cut(s) 410, 712, 791
BceAI ACGGC 2 cut(s) 481, 530
BcnI CCSGG 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 6 cut(s) 6, 564, 567, 669, 734, 777
BlsI GCNGC 6 cut(s) 7, 565, 568, 670, 735, 778
Bme1390I CCNGG 1 cut(s) 745
BmeRI GACNNNNNGTC 2 cut(s) 307, 454
BmgBI CACGTC 2 cut(s) 529, 750
BmgT120I GGNCC 3 cut(s) 514, 535, 735
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 1 cut(s) 745
BmsI GCATC 2 cut(s) 396, 682
BpiI GAAGAC 3 cut(s) 279, 369, 378
BpmI CTGGAG 1 cut(s) 833
BpuEI CTTGAG 2 cut(s) 575, 854
BpuMI CCSGG 1 cut(s) 745
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 2 cut(s) 282, 675
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 459, 579, 780
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 876, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 743, 744, 786
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 459, 579, 780
BseGI GGATG 4 cut(s) 140, 612, 697, 802
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 3 cut(s) 743, 744, 786
BseNI ACTGG 1 cut(s) 678
BseRI GAGGAG 6 cut(s) 16, 202, 315, 797, 830, 897
BseX3I CGGCCG 1 cut(s) 777
BseXI GCAGC 1 cut(s) 655
Bsh1285I CGRYCG 3 cut(s) 289, 360, 780
BshFI GGCC 8 cut(s) 5, 468, 482, 516, 536, 557, 736, 779
BsiEI CGRYCG 3 cut(s) 289, 360, 780
BsiHKAI GWGCWC 3 cut(s) 492, 654, 870
BsiSI CCGG 3 cut(s) 353, 570, 744
BslFI GGGAC 2 cut(s) 301, 760
BslI CCNNNNNNNGG 3 cut(s) 743, 744, 786
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 301, 760
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 8 cut(s) 5, 468, 482, 516, 536, 557, 736, 779
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 4 cut(s) 423, 492, 654, 870
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 3 cut(s) 286, 357, 501
BspANI GGCC 8 cut(s) 5, 468, 482, 516, 536, 557, 736, 779
BspLI GGNNCC 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 1 cut(s) 678
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 459, 579, 780
BssMI GATC 3 cut(s) 286, 357, 501
BssNI GRCGYC 2 cut(s) 282, 675
BssSI CACGAG 1 cut(s) 476
BssT1I CCWWGG 2 cut(s) 459, 579
Bst2BI CACGAG 1 cut(s) 476
Bst6I CTCTTC 7 cut(s) 36, 130, 174, 196, 209, 497, 874
BstACI GRCGYC 2 cut(s) 282, 675
BstAPI GCANNNNNTGC 2 cut(s) 632, 668
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 354, 650, 852
BstDEI CTNAG 1 cut(s) 484
BstF5I GGATG 4 cut(s) 140, 612, 697, 802
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 3 cut(s) 289, 360, 504
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 3 cut(s) 286, 357, 501
BstMCI CGRYCG 3 cut(s) 289, 360, 780
BstMWI GCNNNNNNNGC 7 cut(s) 207, 542, 563, 632, 668, 674, 776
BstNSI RCATGY 2 cut(s) 523, 604
BstSCI CCNGG 1 cut(s) 743
BstV1I GCAGC 1 cut(s) 655
BstV2I GAAGAC 3 cut(s) 279, 369, 378
BstZI CGGCCG 1 cut(s) 777
BsuRI GGCC 8 cut(s) 5, 468, 482, 516, 536, 557, 736, 779
BtrI CACGTC 2 cut(s) 529, 750
BtsCI GGATG 4 cut(s) 140, 612, 697, 802
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 3 cut(s) 354, 650, 852
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 3 cut(s) 514, 535, 735
CseI GACGC 4 cut(s) 290, 458, 593, 683
Csp6I GTAC 1 cut(s) 598
CviAII CATG 2 cut(s) 520, 601
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 1 cut(s) 484
DpnI GATC 3 cut(s) 288, 359, 503
DpnII GATC 3 cut(s) 286, 357, 501
DriI GACNNNNNGTC 2 cut(s) 307, 454
EaeI YGGCCR 2 cut(s) 3, 777
EagI CGGCCG 1 cut(s) 777
Eam1104I CTCTTC 7 cut(s) 36, 130, 174, 196, 209, 497, 874
Eam1105I GACNNNNNGTC 2 cut(s) 307, 454
EarI CTCTTC 7 cut(s) 36, 130, 174, 196, 209, 497, 874
EciI GGCGGA 2 cut(s) 168, 857
Ecl136II GAGCTC 1 cut(s) 490
EclXI CGGCCG 1 cut(s) 777
Eco130I CCWWGG 2 cut(s) 459, 579
Eco147I AGGCCT 2 cut(s) 482, 557
Eco24I GRGCYC 2 cut(s) 423, 492
Eco31I GGTCTC 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 777
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 459, 579
EcoT38I GRGCYC 2 cut(s) 423, 492
ErhI CCWWGG 2 cut(s) 459, 579
FaeI CATG 2 cut(s) 523, 604
FaiI YATR 4 cut(s) 156, 521, 602, 645
FaqI GGGAC 2 cut(s) 301, 760
FatI CATG 2 cut(s) 519, 600
Fnu4HI GCNGC 6 cut(s) 6, 564, 567, 669, 734, 777
FokI GGATG 4 cut(s) 127, 619, 704, 809
FriOI GRGCYC 2 cut(s) 423, 492
Fsp4HI GCNGC 6 cut(s) 6, 564, 567, 669, 734, 777
FspAI RTGCGCAY 1 cut(s) 410
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 1 cut(s) 410
GluI GCNGC 6 cut(s) 6, 564, 567, 669, 734, 777
GsuI CTGGAG 1 cut(s) 833
HaeIII GGCC 8 cut(s) 5, 468, 482, 516, 536, 557, 736, 779
HapII CCGG 3 cut(s) 353, 570, 744
HgaI GACGC 4 cut(s) 290, 458, 593, 683
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 2 cut(s) 282, 675
Hin1II CATG 2 cut(s) 523, 604
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 71
HpaII CCGG 3 cut(s) 353, 570, 744
HphI GGTGA 3 cut(s) 58, 463, 868
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 4 cut(s) 217, 265, 291, 708
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 1 cut(s) 598
Hpy99I CGWCG 9 cut(s) 269, 272, 281, 284, 313, 316, 452, 530, 677
HpyAV CCTTC 4 cut(s) 61, 147, 718, 920
HpyCH4IV ACGT 2 cut(s) 528, 749
HpyCH4V TGCA 3 cut(s) 388, 434, 626
HpyF10VI GCNNNNNNNGC 7 cut(s) 207, 542, 563, 632, 668, 674, 776
HpyF3I CTNAG 1 cut(s) 484
HpySE526I ACGT 2 cut(s) 528, 749
Hsp92I GRCGYC 2 cut(s) 282, 675
Hsp92II CATG 2 cut(s) 523, 604
HspAI GCGC 1 cut(s) 409
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Kzo9I GATC 3 cut(s) 286, 357, 501
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 5 cut(s) 29, 94, 215, 426, 884
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 2 cut(s) 396, 682
MaeII ACGT 2 cut(s) 528, 749
MalI GATC 3 cut(s) 288, 359, 503
MboI GATC 3 cut(s) 286, 357, 501
MhlI GDGCHC 4 cut(s) 423, 492, 654, 870
MluCI AATT 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 288
MroNI GCCGGC 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 605
MspI CCGG 3 cut(s) 353, 570, 744
MspR9I CCNGG 1 cut(s) 745
Mva1269I GAATGC 1 cut(s) 735
MwoI GCNNNNNNNGC 7 cut(s) 207, 542, 563, 632, 668, 674, 776
NaeI GCCGGC 1 cut(s) 354
NciI CCSGG 1 cut(s) 745
NdeII GATC 3 cut(s) 286, 357, 501
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 2 cut(s) 523, 604
NlaIV GGNNCC 1 cut(s) 422
NmeAIII GCCGAG 1 cut(s) 805
NsbI TGCGCA 1 cut(s) 410
NspI RCATGY 2 cut(s) 523, 604
PceI AGGCCT 2 cut(s) 482, 557
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 4 cut(s) 273, 276, 282, 681
PctI GAATGC 1 cut(s) 735
PdiI GCCGGC 1 cut(s) 354
PkrI GCNGC 6 cut(s) 7, 565, 568, 670, 735, 778
Ple19I CGATCG 2 cut(s) 289, 360
Psp124BI GAGCTC 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 3 cut(s) 514, 535, 735
PvuI CGATCG 2 cut(s) 289, 360
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 497
SatI GCNGC 6 cut(s) 6, 564, 567, 669, 734, 777
Sau3AI GATC 3 cut(s) 286, 357, 501
Sau96I GGNCC 3 cut(s) 514, 535, 735
ScrFI CCNGG 1 cut(s) 745
SduI GDGCHC 4 cut(s) 423, 492, 654, 870
SfaNI GCATC 2 cut(s) 396, 682
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 2 cut(s) 590, 869
SmoI CTYRAG 2 cut(s) 590, 869
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 2 cut(s) 482, 557
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 2 cut(s) 482, 557
StyD4I CCNGG 1 cut(s) 743
StyI CCWWGG 2 cut(s) 459, 579
TaiI ACGT 2 cut(s) 531, 752
TaqI TCGA 3 cut(s) 360, 447, 552
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 597
TauI GCSGC 5 cut(s) 8, 566, 569, 736, 779
TseI GCWGC 1 cut(s) 668
TspDTI ATGAA 2 cut(s) 129, 836
XceI RCATGY 2 cut(s) 523, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.