Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002435.1

Orthogroup ID

OG0009745

Physical Location & Seq

Genomic Coordinates Forward (+)

47879 .. 48814

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002435.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggccgccagattggtatctcgctcctctcttcacaaccaatccaatcccttctcccttttcttcaccaagcttcacacaaccacagctccaatcaaccacacccacaaactcatctctttctcttcttcttctccttcatccacaacaacccataacagcaggtctcttcttcctccgccaccattctcttcttttcgcctcttcagctcctccgaacccaacaccaagcgttccaccctcgtcaatttctctctcccctccgacgacgaagacgacgacgccgatcagaaaccaaacgacaagtcgtcatcgtcgtcgtcgtccctccctcctccctacgacccattcaacaagaagccggcgatcgaagacccagaagacccaaaagacttgcaggaagtgttccacaagatgcgcacagatgggctccaaaacaatgcagtcaagatgttcgacgctttgtccaaggacggcctcacccacgaggccttagagctcttcgcccagatcaaagacaagggccacatgcccgacgtggtggcccacaccgccgtcatcgaggcctacgccgccgccggaaagcccaaggacgctctcaaggtgtacatgcggatgttggcgtgtggggttgcaccaaatgcctacacttatagcgtgctcatcaaggcactcgctgccgacgccagtttcgttggggatgcgaagaagtatctgatagagatgatggggaagggaatgcggcccaatgccgggacgtgcgtggcggtgtttgaggcgtttgcggccgaggagagggtggaggatgggagggagttgctggaggagatgaaagggaaagggtttgtggcggacgagcaggcggtgagggaggtgctcaagggtagaagaggagctgtggttagaagtgtcatcaaccttctctttggaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Ribosomal_L15e

Protein Analysis

311

Amino Acids

34.01

Weight (kDa)

6.76

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03560 AT5G03560 AT5G03560
fragaria_vesca	FvH4_6g08960
malus_domestica	MD04G1183300.v1.1 MD12G1196700.v1.1
prunus_persica	Prupe.6G301800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459231
rosa_laevigata	RLG00000025101
rosa_multiflora	Rmu_co8389667.1_g000001 Rmu_sc0002435.1_g000010 Rmu_sc0002435.1_g000012 Rmu_sc0015160.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420390
rosa_rugosa	Rorug03G0034400.1
rosa_samantha	Rh3BG095200 Rh3BG301800 Rh3CG096400 Rh3DG096100 Rh4AG222500
rosa_wichuraiana	Rw3G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	3, 786
AcuI	CTGAAG	1 cut(s)	190
AcyI	GRCGYC	2 cut(s)	282, 684
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	3 cut(s)	752, 753, 795
AgsI	TTSAA	1 cut(s)	352
AhdI	GACNNNNNGTC	2 cut(s)	307, 463
AjiI	CACGTC	2 cut(s)	538, 759
AluBI	AGCT	5 cut(s)	73, 89, 210, 499, 896
AluI	AGCT	5 cut(s)	73, 89, 210, 499, 896
Alw21I	GWGCWC	3 cut(s)	501, 663, 879
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	8 cut(s)	3, 475, 489, 523, 543, 564, 743, 786
ApeKI	GCWGC	1 cut(s)	677
ArsI	GACNNNNNNTTYG	4 cut(s)	290, 322, 674, 706
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	523, 544, 744
AsuC2I	CCSGG	1 cut(s)	754
AsuHPI	GGTGA	3 cut(s)	58, 472, 877
BanII	GRGCYC	2 cut(s)	432, 501
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	3 cut(s)	279, 378, 387
Bbv12I	GWGCWC	3 cut(s)	501, 663, 879
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	3 cut(s)	419, 721, 800
BceAI	ACGGC	2 cut(s)	490, 539
BcnI	CCSGG	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	6 cut(s)	6, 573, 576, 678, 743, 786
BlsI	GCNGC	6 cut(s)	7, 574, 577, 679, 744, 787
Bme1390I	CCNGG	1 cut(s)	754
BmeRI	GACNNNNNGTC	2 cut(s)	307, 463
BmgBI	CACGTC	2 cut(s)	538, 759
BmgT120I	GGNCC	3 cut(s)	523, 544, 744
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	754
BmsI	GCATC	2 cut(s)	405, 691
BpiI	GAAGAC	3 cut(s)	279, 378, 387
BpmI	CTGGAG	1 cut(s)	842
BpuEI	CTTGAG	2 cut(s)	584, 863
BpuMI	CCSGG	1 cut(s)	754
BsaBI	GATNNNNATC	1 cut(s)	16
BsaHI	GRCGYC	2 cut(s)	282, 684
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	468, 588, 789
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 885, 915
Bsc4I	CCNNNNNNNGG	3 cut(s)	752, 753, 795
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	468, 588, 789
BseGI	GGATG	4 cut(s)	140, 621, 706, 811
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	3 cut(s)	752, 753, 795
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	6 cut(s)	16, 202, 324, 806, 839, 906
BseX3I	CGGCCG	1 cut(s)	786
BseXI	GCAGC	1 cut(s)	664
Bsh1285I	CGRYCG	2 cut(s)	369, 789
BshFI	GGCC	8 cut(s)	5, 477, 491, 525, 545, 566, 745, 788
BsiEI	CGRYCG	2 cut(s)	369, 789
BsiHKAI	GWGCWC	3 cut(s)	501, 663, 879
BsiSI	CCGG	3 cut(s)	362, 579, 753
BslFI	GGGAC	2 cut(s)	310, 769
BslI	CCNNNNNNNGG	3 cut(s)	752, 753, 795
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	2 cut(s)	310, 769
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	8 cut(s)	5, 477, 491, 525, 545, 566, 745, 788
Bso31I	GGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	432, 501, 663, 879
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	286, 366, 510
BspANI	GGCC	8 cut(s)	5, 477, 491, 525, 545, 566, 745, 788
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	361
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	687
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	468, 588, 789
BssMI	GATC	3 cut(s)	286, 366, 510
BssNI	GRCGYC	2 cut(s)	282, 684
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	2 cut(s)	468, 588
Bst2BI	CACGAG	1 cut(s)	485
Bst6I	CTCTTC	7 cut(s)	36, 130, 174, 196, 209, 506, 883
BstACI	GRCGYC	2 cut(s)	282, 684
BstAPI	GCANNNNNTGC	2 cut(s)	641, 677
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	3 cut(s)	363, 659, 861
BstDEI	CTNAG	1 cut(s)	493
BstF5I	GGATG	4 cut(s)	140, 621, 706, 811
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	289, 369, 513
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	286, 366, 510
BstMCI	CGRYCG	2 cut(s)	369, 789
BstMWI	GCNNNNNNNGC	7 cut(s)	207, 551, 572, 641, 677, 683, 785
BstNSI	RCATGY	2 cut(s)	532, 613
BstSCI	CCNGG	1 cut(s)	752
BstV1I	GCAGC	1 cut(s)	664
BstV2I	GAAGAC	3 cut(s)	279, 378, 387
BstZI	CGGCCG	1 cut(s)	786
BsuRI	GGCC	8 cut(s)	5, 477, 491, 525, 545, 566, 745, 788
BtrI	CACGTC	2 cut(s)	538, 759
BtsCI	GGATG	4 cut(s)	140, 621, 706, 811
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	363, 659, 861
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	523, 544, 744
CseI	GACGC	4 cut(s)	290, 467, 602, 692
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	2 cut(s)	529, 610
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	1 cut(s)	493
DpnI	GATC	3 cut(s)	288, 368, 512
DpnII	GATC	3 cut(s)	286, 366, 510
DriI	GACNNNNNGTC	2 cut(s)	307, 463
EaeI	YGGCCR	2 cut(s)	3, 786
EagI	CGGCCG	1 cut(s)	786
Eam1104I	CTCTTC	7 cut(s)	36, 130, 174, 196, 209, 506, 883
Eam1105I	GACNNNNNGTC	2 cut(s)	307, 463
EarI	CTCTTC	7 cut(s)	36, 130, 174, 196, 209, 506, 883
EciI	GGCGGA	2 cut(s)	168, 866
Ecl136II	GAGCTC	1 cut(s)	499
EclXI	CGGCCG	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	468, 588
Eco147I	AGGCCT	2 cut(s)	491, 566
Eco24I	GRGCYC	2 cut(s)	432, 501
Eco31I	GGTCTC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	468, 588
EcoT38I	GRGCYC	2 cut(s)	432, 501
ErhI	CCWWGG	2 cut(s)	468, 588
FaeI	CATG	2 cut(s)	532, 613
FaiI	YATR	4 cut(s)	156, 530, 611, 654
FaqI	GGGAC	2 cut(s)	310, 769
FatI	CATG	2 cut(s)	528, 609
Fnu4HI	GCNGC	6 cut(s)	6, 573, 576, 678, 743, 786
FokI	GGATG	4 cut(s)	127, 628, 713, 818
FriOI	GRGCYC	2 cut(s)	432, 501
Fsp4HI	GCNGC	6 cut(s)	6, 573, 576, 678, 743, 786
FspAI	RTGCGCAY	1 cut(s)	419
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	6 cut(s)	6, 573, 576, 678, 743, 786
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	8 cut(s)	5, 477, 491, 525, 545, 566, 745, 788
HapII	CCGG	3 cut(s)	362, 579, 753
HgaI	GACGC	4 cut(s)	290, 467, 602, 692
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	2 cut(s)	282, 684
Hin1II	CATG	2 cut(s)	532, 613
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	71
HpaII	CCGG	3 cut(s)	362, 579, 753
HphI	GGTGA	3 cut(s)	58, 472, 877
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	4 cut(s)	217, 265, 291, 717
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	4 cut(s)	61, 147, 727, 929
HpyCH4IV	ACGT	2 cut(s)	537, 758
HpyCH4V	TGCA	3 cut(s)	397, 443, 635
HpyF10VI	GCNNNNNNNGC	7 cut(s)	207, 551, 572, 641, 677, 683, 785
HpyF3I	CTNAG	1 cut(s)	493
HpySE526I	ACGT	2 cut(s)	537, 758
Hsp92I	GRCGYC	2 cut(s)	282, 684
Hsp92II	CATG	2 cut(s)	532, 613
HspAI	GCGC	1 cut(s)	418
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	286, 366, 510
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	5 cut(s)	29, 94, 215, 435, 893
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	2 cut(s)	405, 691
MaeII	ACGT	2 cut(s)	537, 758
MalI	GATC	3 cut(s)	288, 368, 512
MboI	GATC	3 cut(s)	286, 366, 510
MhlI	GDGCHC	4 cut(s)	432, 501, 663, 879
MluCI	AATT	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	288
MroNI	GCCGGC	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	3 cut(s)	362, 579, 753
MspR9I	CCNGG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	744
MwoI	GCNNNNNNNGC	7 cut(s)	207, 551, 572, 641, 677, 683, 785
NaeI	GCCGGC	1 cut(s)	363
NciI	CCSGG	1 cut(s)	754
NdeII	GATC	3 cut(s)	286, 366, 510
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	532, 613
NlaIV	GGNNCC	1 cut(s)	431
NmeAIII	GCCGAG	1 cut(s)	814
NsbI	TGCGCA	1 cut(s)	419
NspI	RCATGY	2 cut(s)	532, 613
PceI	AGGCCT	2 cut(s)	491, 566
PciSI	GCTCTTC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	6 cut(s)	273, 276, 282, 314, 320, 690
PctI	GAATGC	1 cut(s)	744
PdiI	GCCGGC	1 cut(s)	363
PkrI	GCNGC	6 cut(s)	7, 574, 577, 679, 744, 787
Ple19I	CGATCG	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	3 cut(s)	523, 544, 744
PvuI	CGATCG	1 cut(s)	369
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	506
SatI	GCNGC	6 cut(s)	6, 573, 576, 678, 743, 786
Sau3AI	GATC	3 cut(s)	286, 366, 510
Sau96I	GGNCC	3 cut(s)	523, 544, 744
ScrFI	CCNGG	1 cut(s)	754
SduI	GDGCHC	4 cut(s)	432, 501, 663, 879
SfaNI	GCATC	2 cut(s)	405, 691
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	599, 878
SmoI	CTYRAG	2 cut(s)	599, 878
Sse9I	AATT	1 cut(s)	247
SseBI	AGGCCT	2 cut(s)	491, 566
SstI	GAGCTC	1 cut(s)	501
StuI	AGGCCT	2 cut(s)	491, 566
StyD4I	CCNGG	1 cut(s)	752
StyI	CCWWGG	2 cut(s)	468, 588
TaiI	ACGT	2 cut(s)	540, 761
TaqI	TCGA	3 cut(s)	369, 456, 561
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	5 cut(s)	8, 575, 578, 745, 788
TseI	GCWGC	1 cut(s)	677
TspDTI	ATGAA	2 cut(s)	129, 845
XceI	RCATGY	2 cut(s)	532, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.