Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009745

Physical Location & Seq

Genomic Coordinates Forward (+)

27394695 .. 27395745

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G301800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCAGGGACGTTAGTATCTCGGGCCTTCCTTCTTCTTACCGCCTCTAACTACAAGTCCAATCCTTTCCCCTTTGTTCTCAGTAAGCGTCTCATAGGCATAGCCATAGCTGCAGCCAACCACTCCAACAAAACCATCTCTTTTGCTTCTTCTTCTTCTTCACTCACAGAAAACCACCCCAGGAGGTTGCTTCTCCCATTATCGCTATCTCCTTTTCGTACCTTCGATAGTTTTAGGTTCAGCTCCTCCGAACCCAGCACCAAAGTCAATACCAAGGTTAACTTCTCTCTTCCTTCAGACGACAAAGACGATGACGAAACGACGACGAAAACCGCCACCAAAGAGATCGACAAGTCGAAGCTCCCTCCCCCGTACGACCCTTTCAACAAGAAGCCCGCCATCGAGGACCCAGAAGACCCAAAAGACCTGCAAGAAGTCTTCCACAAGATGCGCACCGATGGCCTCACTAACAATGCAGTCAAGATGTTCGACGCATTGTCCAAAGACGGCTTAACCCACGAGGCCCTGGAGCTCTTTGCTCAAATCAAGGACAAGGGTCATATGCCAGACGTTGTTTCACACACTGCCGTCATAGAGGCCTACGCCAATGCCGGCAAGACCAAGGAGGCTCTCAAGGTGTACCTGCGCATGTTAGCCTCTGGGGTCGCCCCGAACGCCTACACTTATACTGTTCTCATCAAGGCGCTGGCTGCCGACCCCAGCTGTAAGTTCCTTGGGGATGCCAAGAAGTATTTGCTGGAGATGATGGGCAAGGGAATGCGGCCCAATGCCAGTACCTACACGGCAGTGTTCGAGGGGTTTGCGAGGCACGAGGAGAAGGCAGAGGAGGGGAGGGAGTTGCTGGTGGAAATGAAAGCTAAGGGGTTTGTGCCGGACGAGAAAGCTGTGGGGGAGGTTCTTAAGAGCAAGAGAGGGCCTGTGGTTAGAAGCGTCATCAACATTCTCTTTGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Ribosomal_L15e

Protein Analysis

326

Amino Acids

35.77

Weight (kDa)

9.09

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03560 AT5G03560 AT5G03560
fragaria_vesca	FvH4_6g08960
malus_domestica	MD04G1183300.v1.1 MD12G1196700.v1.1
prunus_persica	Prupe.6G301800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459231
rosa_laevigata	RLG00000025101
rosa_multiflora	Rmu_co8389667.1_g000001 Rmu_sc0002435.1_g000010 Rmu_sc0002435.1_g000012 Rmu_sc0015160.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420390
rosa_rugosa	Rorug03G0034400.1
rosa_samantha	Rh3BG095200 Rh3BG301800 Rh3CG096400 Rh3DG096100 Rh4AG222500
rosa_wichuraiana	Rw3G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	452, 647
Acc36I	ACCTGC	2 cut(s)	435, 651
AciI	CCGC	4 cut(s)	42, 333, 396, 781
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	4 cut(s)	220, 374, 641, 796
AflII	CTTAAG	1 cut(s)	920
AgsI	TTSAA	1 cut(s)	385
AhdI	GACNNNNNGTC	1 cut(s)	496
AjnI	CCWGG	2 cut(s)	179, 525
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AleI	CACNNNNGTG	1 cut(s)	806
AluBI	AGCT	7 cut(s)	110, 243, 361, 532, 723, 878, 905
AluI	AGCT	7 cut(s)	110, 243, 361, 532, 723, 878, 905
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	6 cut(s)	24, 460, 522, 597, 782, 935
ApeKI	GCWGC	3 cut(s)	110, 113, 710
AspLEI	GCGC	3 cut(s)	453, 648, 706
AspS9I	GGNCC	5 cut(s)	24, 406, 523, 783, 935
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	406
BaeI	ACNNNNGTAYC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	2 cut(s)	518, 830
BbsI	GAAGAC	2 cut(s)	420, 430
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	97, 125, 697
BccI	CCATC	4 cut(s)	143, 407, 452, 760
BceAI	ACGGC	3 cut(s)	523, 572, 819
BcgI	CGANNNNNNTGC	2 cut(s)	803, 837
BciT130I	CCWGG	2 cut(s)	181, 527
BcoDI	GTCTC	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	707
BfrI	CTTAAG	1 cut(s)	920
BfuAI	ACCTGC	2 cut(s)	435, 651
BisI	GCNGC	4 cut(s)	111, 114, 711, 782
BlsI	GCNGC	4 cut(s)	112, 115, 712, 783
Bme1390I	CCNGG	2 cut(s)	181, 527
Bme18I	GGWCC	1 cut(s)	406
BmeRI	GACNNNNNGTC	1 cut(s)	496
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	5 cut(s)	24, 406, 523, 783, 935
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	181, 527
BmsI	GCATC	2 cut(s)	438, 730
BoxI	GACNNNNGTC	1 cut(s)	555
BpiI	GAAGAC	2 cut(s)	420, 430
BpmI	CTGGAG	2 cut(s)	548, 779
Bpu10I	CCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	617
BsaJI	CCNNGG	5 cut(s)	179, 273, 525, 621, 733
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	181, 527
BseDI	CCNNGG	5 cut(s)	179, 273, 525, 621, 733
BseGI	GGATG	1 cut(s)	745
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	792
BseRI	GAGGAG	3 cut(s)	235, 848, 860
BseXI	GCAGC	3 cut(s)	97, 125, 697
BseYI	CCCAGC	2 cut(s)	254, 719
BshFI	GGCC	6 cut(s)	26, 462, 524, 599, 784, 937
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	612, 893
BsiWI	CGTACG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	6 cut(s)	26, 462, 524, 599, 784, 937
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	4 cut(s)	42, 333, 396, 781
BspANI	GGCC	6 cut(s)	26, 462, 524, 599, 784, 937
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	2 cut(s)	435, 651
BspTI	CTTAAG	1 cut(s)	920
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	792
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	5 cut(s)	179, 273, 525, 621, 733
BssMI	GATC	1 cut(s)	345
BssSI	CACGAG	2 cut(s)	518, 830
BssT1I	CCWWGG	3 cut(s)	273, 621, 733
Bst2BI	CACGAG	2 cut(s)	518, 830
Bst2UI	CCWGG	2 cut(s)	181, 527
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	1 cut(s)	294
BstAFI	CTTAAG	1 cut(s)	920
BstC8I	GCNNGC	3 cut(s)	396, 613, 708
BstDEI	CTNAG	2 cut(s)	80, 879
BstF5I	GGATG	1 cut(s)	745
BstH2I	RGCGCY	1 cut(s)	707
BstHHI	GCGC	3 cut(s)	453, 648, 706
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 459, 674, 710
BstNI	CCWGG	2 cut(s)	181, 527
BstNSI	RCATGY	1 cut(s)	652
BstPAI	GACNNNNGTC	1 cut(s)	555
BstSCI	CCNGG	2 cut(s)	179, 525
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	97, 125, 697
BstV2I	GAAGAC	2 cut(s)	420, 430
BsuRI	GGCC	6 cut(s)	26, 462, 524, 599, 784, 937
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	2 cut(s)	582, 813
BtsIMutI	CAGTG	2 cut(s)	582, 813
BveI	ACCTGC	2 cut(s)	435, 651
Cac8I	GCNNGC	3 cut(s)	396, 613, 708
CfoI	GCGC	3 cut(s)	453, 648, 706
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	5 cut(s)	24, 406, 523, 783, 935
CseI	GACGC	3 cut(s)	77, 500, 940
Csp6I	GTAC	4 cut(s)	219, 373, 640, 795
CviAII	CATG	1 cut(s)	649
CviQI	GTAC	4 cut(s)	219, 373, 640, 795
DdeI	CTNAG	2 cut(s)	80, 879
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DriI	GACNNNNNGTC	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	3 cut(s)	273, 621, 733
Eco147I	AGGCCT	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	3 cut(s)	406, 523, 935
EcoRII	CCWGG	2 cut(s)	179, 525
EcoT14I	CCWWGG	3 cut(s)	273, 621, 733
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	3 cut(s)	273, 621, 733
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	652
FaiI	YATR	8 cut(s)	95, 101, 107, 561, 563, 593, 650, 687
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	1 cut(s)	648
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	111, 114, 711, 782
FokI	GGATG	1 cut(s)	752
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	4 cut(s)	111, 114, 711, 782
FspAI	RTGCGCAY	1 cut(s)	452
FspI	TGCGCA	2 cut(s)	452, 647
GlaI	GCGC	3 cut(s)	452, 647, 705
GluI	GCNGC	4 cut(s)	111, 114, 711, 782
GsaI	CCCAGC	2 cut(s)	258, 723
GsuI	CTGGAG	2 cut(s)	548, 779
HaeII	RGCGCY	1 cut(s)	707
HaeIII	GGCC	6 cut(s)	26, 462, 524, 599, 784, 937
HapII	CCGG	2 cut(s)	612, 893
HgaI	GACGC	3 cut(s)	77, 500, 940
HhaI	GCGC	3 cut(s)	453, 648, 706
Hin1II	CATG	1 cut(s)	652
Hin6I	GCGC	3 cut(s)	451, 646, 704
HinP1I	GCGC	3 cut(s)	451, 646, 704
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	612, 893
Hpy166II	GTNNAC	2 cut(s)	280, 640
Hpy188I	TCNGA	2 cut(s)	250, 298
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	2 cut(s)	280, 640
Hpy99I	CGWCG	3 cut(s)	325, 328, 494
HpyAV	CCTTC	5 cut(s)	37, 41, 232, 303, 832
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	2 cut(s)	11, 570
HpyCH4V	TGCA	3 cut(s)	113, 430, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 459, 674, 710
HpyF3I	CTNAG	2 cut(s)	80, 879
HpySE526I	ACGT	2 cut(s)	11, 570
Hsp92II	CATG	1 cut(s)	652
HspAI	GCGC	3 cut(s)	451, 646, 704
KroI	GCCGGC	1 cut(s)	611
KroNI	GCCGGC	1 cut(s)	613
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	248, 366, 529
Lsp1109I	GCAGC	3 cut(s)	97, 125, 697
LweI	GCATC	2 cut(s)	438, 730
MaeII	ACGT	2 cut(s)	11, 570
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	8 cut(s)	26, 141, 144, 147, 150, 281, 425, 430
MhlI	GDGCHC	1 cut(s)	534
MmeI	TCCRAC	1 cut(s)	150
MroNI	GCCGGC	1 cut(s)	611
MseI	TTAA	3 cut(s)	279, 512, 921
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	723
MspCI	CTTAAG	1 cut(s)	920
MspI	CCGG	2 cut(s)	612, 893
MspR9I	CCNGG	2 cut(s)	181, 527
Mva1269I	GAATGC	1 cut(s)	783
MvaI	CCWGG	2 cut(s)	181, 527
MwoI	GCNNNNNNNGC	4 cut(s)	110, 459, 674, 710
NaeI	GCCGGC	1 cut(s)	613
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	1 cut(s)	345
NgoMIV	GCCGGC	1 cut(s)	611
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	1 cut(s)	408
NsbI	TGCGCA	2 cut(s)	452, 647
NspI	RCATGY	1 cut(s)	652
OliI	CACNNNNGTG	1 cut(s)	806
PceI	AGGCCT	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	783
PdiI	GCCGGC	1 cut(s)	613
Pfl23II	CGTACG	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	112, 115, 712, 783
PpuMI	RGGWCCY	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	179, 525
PspFI	CCCAGC	2 cut(s)	254, 719
PspGI	CCWGG	2 cut(s)	179, 525
PspLI	CGTACG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	5 cut(s)	24, 406, 523, 783, 935
PspPPI	RGGWCCY	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	723
RsaI	GTAC	4 cut(s)	220, 374, 641, 796
RsaNI	GTAC	4 cut(s)	219, 373, 640, 795
RseI	CAYNNNNRTG	1 cut(s)	806
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	279, 512, 921
SatI	GCNGC	4 cut(s)	111, 114, 711, 782
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	5 cut(s)	24, 406, 523, 783, 935
ScrFI	CCNGG	2 cut(s)	181, 527
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	438, 730
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	2 cut(s)	632, 920
SmoI	CTYRAG	2 cut(s)	632, 920
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	4 cut(s)	42, 333, 396, 781
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	179, 525
StyI	CCWWGG	3 cut(s)	273, 621, 733
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	2 cut(s)	14, 573
TaqI	TCGA	6 cut(s)	225, 348, 356, 402, 489, 813
TauI	GCSGC	1 cut(s)	784
Tru1I	TTAA	3 cut(s)	279, 512, 921
Tru9I	TTAA	3 cut(s)	279, 512, 921
TscAI	CASTG	2 cut(s)	589, 813
TseI	GCWGC	3 cut(s)	110, 113, 710
TspDTI	ATGAA	1 cut(s)	887
TspRI	CASTG	2 cut(s)	589, 813
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	406
XceI	RCATGY	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.