Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03560 AT5G03560 AT5G03560 |
| fragaria_vesca | FvH4_6g08960 |
| malus_domestica | MD04G1183300.v1.1 MD12G1196700.v1.1 |
| prunus_persica | Prupe.6G301800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0459231 |
| rosa_laevigata | RLG00000025101 |
| rosa_multiflora | Rmu_co8389667.1_g000001 Rmu_sc0002435.1_g000010 Rmu_sc0002435.1_g000012 Rmu_sc0015160.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00420390 |
| rosa_rugosa | Rorug03G0034400.1 |
| rosa_samantha | Rh3BG095200 Rh3BG301800 Rh3CG096400 Rh3DG096100 Rh4AG222500 |
| rosa_wichuraiana | Rw3G007940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 38 |
| AciI | CCGC | 5 cut(s) | 36, 68, 71, 137, 149 |
| AcoI | YGGCCR | 1 cut(s) | 48 |
| Alw21I | GWGCWC | 1 cut(s) | 165 |
| Alw26I | GTCTC | 1 cut(s) | 137 |
| AoxI | GGCC | 2 cut(s) | 26, 48 |
| AspS9I | GGNCC | 1 cut(s) | 27 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| Bbv12I | GWGCWC | 1 cut(s) | 165 |
| BccI | CCATC | 1 cut(s) | 4 |
| BceAI | ACGGC | 2 cut(s) | 35, 162 |
| BcoDI | GTCTC | 1 cut(s) | 137 |
| BisI | GCNGC | 2 cut(s) | 36, 69 |
| BlsI | GCNGC | 2 cut(s) | 37, 70 |
| BmgT120I | GGNCC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 1 cut(s) | 128 |
| BpuEI | CTTGAG | 1 cut(s) | 149 |
| BsaAI | YACGTR | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 171, 201 |
| BseRI | GAGGAG | 5 cut(s) | 89, 101, 104, 125, 192 |
| Bsh1236I | CGCG | 1 cut(s) | 38 |
| BshFI | GGCC | 2 cut(s) | 28, 50 |
| BsiHKAI | GWGCWC | 1 cut(s) | 165 |
| BsmAI | GTCTC | 1 cut(s) | 137 |
| BsmBI | CGTCTC | 1 cut(s) | 137 |
| BsnI | GGCC | 2 cut(s) | 28, 50 |
| Bsp1286I | GDGCHC | 1 cut(s) | 165 |
| BspACI | CCGC | 5 cut(s) | 36, 68, 71, 137, 149 |
| BspANI | GGCC | 2 cut(s) | 28, 50 |
| BspFNI | CGCG | 1 cut(s) | 38 |
| Bst6I | CTCTTC | 1 cut(s) | 169 |
| BstBAI | YACGTR | 1 cut(s) | 46 |
| BstFNI | CGCG | 1 cut(s) | 38 |
| BstMAI | GTCTC | 1 cut(s) | 137 |
| BstUI | CGCG | 1 cut(s) | 38 |
| BsuRI | GGCC | 2 cut(s) | 28, 50 |
| Cfr13I | GGNCC | 1 cut(s) | 27 |
| CviJI | RGCY | 2 cut(s) | 28, 50 |
| CviKI_1 | RGCY | 2 cut(s) | 28, 50 |
| EaeI | YGGCCR | 1 cut(s) | 48 |
| Eam1104I | CTCTTC | 1 cut(s) | 169 |
| EarI | CTCTTC | 1 cut(s) | 169 |
| EciI | GGCGGA | 2 cut(s) | 86, 152 |
| Esp3I | CGTCTC | 1 cut(s) | 137 |
| Fnu4HI | GCNGC | 2 cut(s) | 36, 69 |
| Fsp4HI | GCNGC | 2 cut(s) | 36, 69 |
| GluI | GCNGC | 2 cut(s) | 36, 69 |
| GsuI | CTGGAG | 1 cut(s) | 128 |
| HaeIII | GGCC | 2 cut(s) | 28, 50 |
| HincII | GTYRAC | 1 cut(s) | 202 |
| HindII | GTYRAC | 1 cut(s) | 202 |
| HpaI | GTTAAC | 1 cut(s) | 202 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 1 cut(s) | 202 |
| Hpy8I | GTNNAC | 1 cut(s) | 202 |
| HpyAV | CCTTC | 3 cut(s) | 10, 118, 215 |
| HpyCH4IV | ACGT | 1 cut(s) | 45 |
| HpySE526I | ACGT | 1 cut(s) | 45 |
| KspAI | GTTAAC | 1 cut(s) | 202 |
| LpnPI | CCDG | 1 cut(s) | 92 |
| MaeII | ACGT | 1 cut(s) | 45 |
| MboII | GAAGA | 1 cut(s) | 186 |
| MhlI | GDGCHC | 1 cut(s) | 165 |
| MseI | TTAA | 1 cut(s) | 201 |
| MvnI | CGCG | 1 cut(s) | 38 |
| PkrI | GCNGC | 2 cut(s) | 37, 70 |
| Ppu21I | YACGTR | 1 cut(s) | 46 |
| PspPI | GGNCC | 1 cut(s) | 27 |
| SaqAI | TTAA | 1 cut(s) | 201 |
| SatI | GCNGC | 2 cut(s) | 36, 69 |
| Sau96I | GGNCC | 1 cut(s) | 27 |
| SduI | GDGCHC | 1 cut(s) | 165 |
| SetI | ASST | 4 cut(s) | 48, 63, 162, 207 |
| SgeI | CNNG | 6 cut(s) | 49, 58, 64, 119, 154, 178 |
| SmlI | CTYRAG | 1 cut(s) | 164 |
| SmoI | CTYRAG | 1 cut(s) | 164 |
| SsiI | CCGC | 5 cut(s) | 36, 68, 71, 137, 149 |
| TaiI | ACGT | 1 cut(s) | 48 |
| TauI | GCSGC | 2 cut(s) | 38, 71 |
| Tru1I | TTAA | 1 cut(s) | 201 |
| Tru9I | TTAA | 1 cut(s) | 201 |
| TspDTI | ATGAA | 1 cut(s) | 131 |