Rmu_co8389667.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8389667.1
OG0009745
Physical Location & Seq
Forward (+)
1 .. 622
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8389667.1_g000001.1.cds

Sequence Viewer

Length: 622 bp
gtcgtcgtcgtccctccctcctccctacgacccattcaacaagaagccggcgatcgaagacccagaagacccaaaagacttgcaggaagtgttccacaagatgcgcacagatgggctccaaaacaatgcagtcaagatgttcgacgctttgtccaaggacggcctcacccacgaggccttagagctcttcgcccagatcaaagacaagggccacatgcccgacgtggtggcccacaccgccgtcatcgaggcctacgccgccgccggaaagcccaaggacgctctcaaggtgtacatgcggatgttggcgtgtggggttgcaccaaatgcctacacttatagcgtgctcatcaaggcactcgctgccgacgccagtttcgttggggatgcgaagaagtatctgatagagatgatggggaagggaatgcggcccaatgccgggacgtgcgtggcggtgtttgaggcgtttgcggccgaggagagggtggaggatgggagggagttgctggaggagatgaaagggaaagggtttgtggcggacgagcaggcggtgagggaggtgctcaagggtagaagaggagctgtggttagaagtgtcatcaaccttctctttggaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Ribosomal_L15e

Protein Analysis

206

Amino Acids

22.48

Weight (kDa)

6.12

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 105
AciI CCGC 9 cut(s) 238, 259, 262, 299, 428, 453, 471, 537, 549
AcoI YGGCCR 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 438, 439, 481
AgsI TTSAA 1 cut(s) 38
AhdI GACNNNNNGTC 1 cut(s) 149
AjiI CACGTC 2 cut(s) 224, 445
AluBI AGCT 2 cut(s) 185, 582
AluI AGCT 2 cut(s) 185, 582
Alw21I GWGCWC 3 cut(s) 187, 349, 565
AoxI GGCC 7 cut(s) 161, 175, 209, 229, 250, 429, 472
ApeKI GCWGC 1 cut(s) 363
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 3 cut(s) 209, 230, 430
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 158, 563
BanII GRGCYC 2 cut(s) 118, 187
BauI CACGAG 1 cut(s) 171
BbsI GAAGAC 2 cut(s) 64, 73
Bbv12I GWGCWC 3 cut(s) 187, 349, 565
BbvI GCAGC 1 cut(s) 350
BccI CCATC 3 cut(s) 105, 407, 486
BceAI ACGGC 2 cut(s) 176, 225
BcnI CCSGG 1 cut(s) 440
BisI GCNGC 5 cut(s) 259, 262, 364, 429, 472
BlsI GCNGC 5 cut(s) 260, 263, 365, 430, 473
Bme1390I CCNGG 1 cut(s) 440
BmeRI GACNNNNNGTC 1 cut(s) 149
BmgBI CACGTC 2 cut(s) 224, 445
BmgT120I GGNCC 3 cut(s) 209, 230, 430
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 2 cut(s) 91, 377
BpiI GAAGAC 2 cut(s) 64, 73
BpmI CTGGAG 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 270, 549
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 370
BsaJI CCNNGG 3 cut(s) 154, 274, 475
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 3 cut(s) 438, 439, 481
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 373
BseDI CCNNGG 3 cut(s) 154, 274, 475
BseGI GGATG 3 cut(s) 307, 392, 497
BseLI CCNNNNNNNGG 3 cut(s) 438, 439, 481
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 4 cut(s) 10, 492, 525, 592
BseX3I CGGCCG 1 cut(s) 472
BseXI GCAGC 1 cut(s) 350
Bsh1285I CGRYCG 2 cut(s) 55, 475
BshFI GGCC 7 cut(s) 163, 177, 211, 231, 252, 431, 474
BsiEI CGRYCG 2 cut(s) 55, 475
BsiHKAI GWGCWC 3 cut(s) 187, 349, 565
BsiSI CCGG 3 cut(s) 48, 265, 439
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 3 cut(s) 438, 439, 481
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 7 cut(s) 163, 177, 211, 231, 252, 431, 474
Bsp1286I GDGCHC 4 cut(s) 118, 187, 349, 565
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 2 cut(s) 52, 196
BspACI CCGC 9 cut(s) 238, 259, 262, 299, 428, 453, 471, 537, 549
BspANI GGCC 7 cut(s) 163, 177, 211, 231, 252, 431, 474
BspLI GGNNCC 1 cut(s) 117
BspQI GCTCTTC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 292
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 154, 274, 475
BssMI GATC 2 cut(s) 52, 196
BssNI GRCGYC 1 cut(s) 370
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 154, 274
Bst2BI CACGAG 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 192, 569
BstACI GRCGYC 1 cut(s) 370
BstAPI GCANNNNNTGC 2 cut(s) 327, 363
BstAUI TGTACA 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 49, 345, 547
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 3 cut(s) 307, 392, 497
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 2 cut(s) 55, 199
BstMBI GATC 2 cut(s) 52, 196
BstMCI CGRYCG 2 cut(s) 55, 475
BstMWI GCNNNNNNNGC 6 cut(s) 237, 258, 327, 363, 369, 471
BstNSI RCATGY 2 cut(s) 218, 299
BstSCI CCNGG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 2 cut(s) 64, 73
BstZI CGGCCG 1 cut(s) 472
BsuRI GGCC 7 cut(s) 163, 177, 211, 231, 252, 431, 474
BtrI CACGTC 2 cut(s) 224, 445
BtsCI GGATG 3 cut(s) 307, 392, 497
Cac8I GCNNGC 3 cut(s) 49, 345, 547
CfoI GCGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 3 cut(s) 209, 230, 430
CseI GACGC 3 cut(s) 153, 288, 378
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 215, 296
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 54, 198
DpnII GATC 2 cut(s) 52, 196
DriI GACNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 472
EagI CGGCCG 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 192, 569
Eam1105I GACNNNNNGTC 1 cut(s) 149
EarI CTCTTC 2 cut(s) 192, 569
EciI GGCGGA 1 cut(s) 552
Ecl136II GAGCTC 1 cut(s) 185
EclXI CGGCCG 1 cut(s) 472
Eco130I CCWWGG 2 cut(s) 154, 274
Eco147I AGGCCT 2 cut(s) 177, 252
Eco24I GRGCYC 2 cut(s) 118, 187
Eco52I CGGCCG 1 cut(s) 472
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 154, 274
EcoT38I GRGCYC 2 cut(s) 118, 187
ErhI CCWWGG 2 cut(s) 154, 274
FaeI CATG 2 cut(s) 218, 299
FaiI YATR 3 cut(s) 216, 297, 340
FaqI GGGAC 1 cut(s) 455
FatI CATG 2 cut(s) 214, 295
Fnu4HI GCNGC 5 cut(s) 259, 262, 364, 429, 472
FokI GGATG 3 cut(s) 314, 399, 504
FriOI GRGCYC 2 cut(s) 118, 187
Fsp4HI GCNGC 5 cut(s) 259, 262, 364, 429, 472
FspAI RTGCGCAY 1 cut(s) 105
FspI TGCGCA 1 cut(s) 105
GlaI GCGC 1 cut(s) 105
GluI GCNGC 5 cut(s) 259, 262, 364, 429, 472
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 7 cut(s) 163, 177, 211, 231, 252, 431, 474
HapII CCGG 3 cut(s) 48, 265, 439
HgaI GACGC 3 cut(s) 153, 288, 378
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 2 cut(s) 218, 299
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HpaII CCGG 3 cut(s) 48, 265, 439
HphI GGTGA 2 cut(s) 158, 563
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 293
Hpy99I CGWCG 5 cut(s) 8, 11, 147, 225, 372
HpyAV CCTTC 2 cut(s) 413, 615
HpyCH4IV ACGT 2 cut(s) 223, 444
HpyCH4V TGCA 3 cut(s) 83, 129, 321
HpyF10VI GCNNNNNNNGC 6 cut(s) 237, 258, 327, 363, 369, 471
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 2 cut(s) 223, 444
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 2 cut(s) 218, 299
HspAI GCGC 1 cut(s) 104
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 52, 196
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 121, 579
LpnPI CCDG 9 cut(s) 61, 69, 76, 207, 278, 386, 452, 492, 531
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 2 cut(s) 91, 377
MaeII ACGT 2 cut(s) 223, 444
MalI GATC 2 cut(s) 54, 198
MboI GATC 2 cut(s) 52, 196
MboII GAAGA 5 cut(s) 69, 78, 179, 404, 586
MhlI GDGCHC 4 cut(s) 118, 187, 349, 565
MroNI GCCGGC 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 3 cut(s) 48, 265, 439
MspR9I CCNGG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 430
MwoI GCNNNNNNNGC 6 cut(s) 237, 258, 327, 363, 369, 471
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 1 cut(s) 440
NdeII GATC 2 cut(s) 52, 196
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 218, 299
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 500
NsbI TGCGCA 1 cut(s) 105
NspI RCATGY 2 cut(s) 218, 299
PceI AGGCCT 2 cut(s) 177, 252
PciSI GCTCTTC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 376
PctI GAATGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 49
PkrI GCNGC 5 cut(s) 260, 263, 365, 430, 473
Ple19I CGATCG 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 3 cut(s) 209, 230, 430
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 192
SatI GCNGC 5 cut(s) 259, 262, 364, 429, 472
Sau3AI GATC 2 cut(s) 52, 196
Sau96I GGNCC 3 cut(s) 209, 230, 430
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 4 cut(s) 118, 187, 349, 565
SetI ASST 7 cut(s) 187, 226, 292, 447, 562, 584, 607
SfaNI GCATC 2 cut(s) 91, 377
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 285, 564
SmoI CTYRAG 2 cut(s) 285, 564
SseBI AGGCCT 2 cut(s) 177, 252
SsiI CCGC 9 cut(s) 238, 259, 262, 299, 428, 453, 471, 537, 549
SstI GAGCTC 1 cut(s) 187
StuI AGGCCT 2 cut(s) 177, 252
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 2 cut(s) 154, 274
TaiI ACGT 2 cut(s) 226, 447
TaqI TCGA 3 cut(s) 55, 142, 247
TatI WGTACW 1 cut(s) 292
TauI GCSGC 4 cut(s) 261, 264, 431, 474
TseI GCWGC 1 cut(s) 363
TspDTI ATGAA 1 cut(s) 531
XceI RCATGY 2 cut(s) 218, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.