FvH4_6g09030

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5323054 .. 5329300
6247 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09030.t1

Sequence Viewer

Length: 1809 bp
ATGGCGTACGCCGGAAAGAAGAGATGGAAAGGATTGGTGGTTGGAGTTCTAGGCCTGGTGTTGCTTTCTATGCTGGTTCCTCTTCTCTTCCTTCTCGGAATTCACAATGGCTTTCAAGGTTACGGTTCGGAGCAGCCGAATTCGCCTACTCATACTACACCAATCATCATCAAGGAAAGTTCCGAGGAGGATCATGTAAAGCATGTAAAGGATATTGTGAAACACTTTGCACCGCCAATTTTTAAGGATTTACTAAAGAATATCTCACACAATGCTGAAAATAAAACCATTGAAGTCACGTTGCAAAAGACTGAACAAGAAAAAGAGTTTCGATCCCCGCCCCAGCACGCCCCACTATCCCCATCTATAATCAATAACTCCAAAGTGGAAAAGGTTGAAATGATTGATTACGCAAAAGGTGGTATTGATGAAAGTGGAAAAACATGTCAAGTGAAATTTGGGAGTTACTGCCTTTGGCGCCAAGAACATAAAGAAGACATGAAGGATTTTATGGTGAAGAAATTGAAGGATTCACTGTTTGTGGCAAGAGCATATTTTCCTACTATTGCAAAACTTCCATCTCAACGCAAGTTCTCTAGTGAAATGAAACAAAACATTCAAGAGCTGGAGAAAGTTCTGAGTGAAAGTACTACAGATGCTGATCTTCCATCACAGATTGAGAAGAAGCTTGCGAGGATGCAAGCCGTGATAGCGAAAGCCAAAACCTTCCCTGTGGAATGTCACAATGTTGATAAGAAGCTGAGACAAATATTTGATATGACTGCTGATGAAGCTCACTTCCACATGAAACAAAGTGTCTTCCTCTACCAACTTGCAGTCCAGACTATGCCAAAGAGTCTCCACTGCTTGTCTATGAGACTGACTGTGGAATTTTTCAGAGATCCCGTTTATGATATGGAGTCTCTGGCTAGCAAATACAATGATCCTGCATTGCAGCACTATGTCATATTCTCCACCAATGTACTTGCATCATCAGTTGTAATTAACTCAACTGTAATGCATGCAAAAGAAAGTGGGAAACTGGTTTTTCATGTGCTGACGGATCAACAGAATTACTTTGCGTTGAAACTATGGTTTTATAGAAATACTTATAAAGAAGCCATAGTTCAAGTCTTAAACCTGGAGGAGATTGACAACCGCAAATTATTCCTGTCATTGCCTGTGGAGTTCCGTGTTTCCTTTGGCATTGGTGCCGAAGCTAGAACGGAATACCTATCTATTTTTTCTCATTCACACTATCTTCTTCCTGAGATCTTCCAGAAGTTGGAGAAAGTTGTGGTTTTGGATGAAGATGTTGTTGTACAGCAGGACTTGTCTGCACTTTGGAGCCTTAACATGGAAGGGAAAGTTAATGCTGCTGTACAGTTGTGCTCAGTGAAGTTGAGTAATCTTCTGAAGAGCAGTTTTGATAAAACTTCATGTGCTTGGATGTCTGGATTGAATGTCATTGATCTAGTTAAGTGGAGAGAACTTGATCTCACTGAAACTTACCGAAGGTTTGTAAATGAGGCGAGCACACAAGAGGGGCAAAATGAAGCTGCTGCATTGCATGCAAGCTTACTAACCTTTAAGGACTTGATTTATCCTCTTGATAGTGTGTGGGCTCTCTCCGGACTGGGTAATGACTATAATATAGATATGTCTGCAGTAACAAAAGCTGCGGTGCTGCACTACAACGGAAAGATGAAACCTTGGCTTGATTTAGGGATCCCAAAATATAAGGTTTTCTGGAAGAGATTTCTGAACCGAGAAGATCAGTTCTTAACTGACTGCAACGTGAATTCATAG

Protein Analysis

603

Amino Acids

68.75

Weight (kDa)

7.65

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 168 - 243 4.3e-24 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 289 - 574 2.1e-44 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AccB1I GGYRCC 2 cut(s) 477, 1211
AccB7I CCANNNNNTGG 1 cut(s) 1285
AccIII TCCGGA 1 cut(s) 1631
AciI CCGC 4 cut(s) 233, 338, 1159, 1682
AclWI GGATC 7 cut(s) 198, 327, 896, 938, 1071, 1723, 1736
AcsI RAATTY 5 cut(s) 99, 139, 455, 890, 1801
AcuI CTGAAG 1 cut(s) 1436
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 5 cut(s) 8, 649, 984, 1323, 1383
AfiI CCNNNNNNNGG 2 cut(s) 1285, 1357
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 8 cut(s) 116, 293, 398, 526, 620, 1087, 1130, 1462
AjnI CCWGG 2 cut(s) 54, 1140
AluBI AGCT 8 cut(s) 625, 688, 760, 794, 1220, 1559, 1578, 1679
AluI AGCT 8 cut(s) 625, 688, 760, 794, 1220, 1559, 1578, 1679
Alw21I GWGCWC 2 cut(s) 1394, 1538
Alw26I GTCTC 4 cut(s) 757, 863, 871, 927
AlwI GGATC 7 cut(s) 198, 327, 896, 938, 1071, 1723, 1736
AlwNI CAGNNNCTG 1 cut(s) 659
Aor13HI TCCGGA 1 cut(s) 1631
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 7 cut(s) 133, 955, 1376, 1559, 1562, 1679, 1687
ApoI RAATTY 5 cut(s) 99, 139, 455, 890, 1801
AspLEI GCGC 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 526
AsuNHI GCTAGC 1 cut(s) 929
BamHI GGATCC 1 cut(s) 1728
BanI GGYRCC 2 cut(s) 477, 1211
BanII GRGCYC 1 cut(s) 1627
BbsI GAAGAC 2 cut(s) 501, 811
Bbv12I GWGCWC 2 cut(s) 1394, 1538
BbvI GCAGC 7 cut(s) 145, 967, 1363, 1546, 1549, 1666, 1674
BccI CCATC 4 cut(s) 18, 370, 586, 676
BceAI ACGGC 1 cut(s) 689
BciT130I CCWGG 2 cut(s) 56, 1142
BcoDI GTCTC 4 cut(s) 757, 863, 871, 927
BfaI CTAG 5 cut(s) 50, 597, 930, 1221, 1475
BfmI CTRYAG 2 cut(s) 651, 1665
BfoI RGCGCY 1 cut(s) 481
BglII AGATCT 1 cut(s) 1272
BisI GCNGC 7 cut(s) 134, 956, 1377, 1560, 1563, 1680, 1688
BlsI GCNGC 7 cut(s) 135, 957, 1378, 1561, 1564, 1681, 1689
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 56, 1142
BmiI GGNNCC 5 cut(s) 78, 479, 1213, 1349, 1730
BmrFI CCNGG 2 cut(s) 56, 1142
BmrI ACTGGG 1 cut(s) 1646
BmsI GCATC 3 cut(s) 646, 687, 998
BmtI GCTAGC 1 cut(s) 933
BmuI ACTGGG 1 cut(s) 1646
BpiI GAAGAC 2 cut(s) 501, 811
BpmI CTGGAG 2 cut(s) 647, 1163
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 183, 1712
BsaWI WCCGGW 1 cut(s) 1631
Bsc4I CCNNNNNNNGG 2 cut(s) 1285, 1357
Bse1I ACTGG 2 cut(s) 1047, 1641
Bse3DI GCAATG 3 cut(s) 950, 1175, 1565
Bse8I GATNNNNATC 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 1631
BseBI CCWGG 2 cut(s) 56, 1142
BseDI CCNNGG 2 cut(s) 183, 1712
BseGI GGATG 3 cut(s) 702, 1312, 1455
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 2 cut(s) 1285, 1357
BseMI GCAATG 3 cut(s) 950, 1175, 1565
BseMII CTCAG 4 cut(s) 629, 752, 1260, 1407
BseNI ACTGG 2 cut(s) 1047, 1641
BseRI GAGGAG 2 cut(s) 200, 1160
BseXI GCAGC 7 cut(s) 145, 967, 1363, 1546, 1549, 1666, 1674
BseYI CCCAGC 1 cut(s) 342
BsgI GTGCAG 2 cut(s) 1323, 1673
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 2 cut(s) 477, 1211
BsiHKAI GWGCWC 2 cut(s) 1394, 1538
BsiSI CCGG 2 cut(s) 12, 1632
BsiWI CGTACG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 1285, 1357
BsmAI GTCTC 4 cut(s) 757, 863, 871, 927
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 3 cut(s) 1394, 1538, 1627
Bsp13I TCCGGA 1 cut(s) 1631
Bsp1407I TGTACA 2 cut(s) 1321, 1381
BspACI CCGC 4 cut(s) 233, 338, 1159, 1682
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 4 cut(s) 630, 753, 1261, 1406
BspEI TCCGGA 1 cut(s) 1631
BspLI GGNNCC 5 cut(s) 78, 479, 1213, 1349, 1730
BspMAI CTGCAG 1 cut(s) 1669
BspOI GCTAGC 1 cut(s) 933
BspPI GGATC 7 cut(s) 198, 327, 896, 938, 1071, 1723, 1736
BspQI GCTCTTC 1 cut(s) 1412
BspT107I GGYRCC 2 cut(s) 477, 1211
BsrDI GCAATG 3 cut(s) 950, 1175, 1565
BsrGI TGTACA 2 cut(s) 1321, 1381
BsrI ACTGG 2 cut(s) 1047, 1641
BssECI CCNNGG 2 cut(s) 183, 1712
BssNI GRCGYC 1 cut(s) 478
BssT1I CCWWGG 1 cut(s) 1712
Bst2UI CCWGG 2 cut(s) 56, 1142
Bst4CI ACNGT 5 cut(s) 125, 537, 886, 1015, 1386
Bst6I CTCTTC 5 cut(s) 14, 87, 92, 1412, 1748
BstACI GRCGYC 1 cut(s) 478
BstAPI GCANNNNNTGC 1 cut(s) 1571
BstAUI TGTACA 2 cut(s) 1321, 1381
BstC8I GCNNGC 8 cut(s) 348, 690, 702, 931, 1023, 1534, 1572, 1576
BstDEI CTNAG 4 cut(s) 638, 761, 1269, 1393
BstF5I GGATG 3 cut(s) 702, 1312, 1455
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 1 cut(s) 480
BstMAI GTCTC 4 cut(s) 757, 863, 871, 927
BstMWI GCNNNNNNNGC 6 cut(s) 70, 142, 477, 710, 791, 1571
BstNI CCWGG 2 cut(s) 56, 1142
BstNSI RCATGY 4 cut(s) 206, 447, 1025, 1574
BstSCI CCNGG 2 cut(s) 54, 1140
BstSFI CTRYAG 2 cut(s) 651, 1665
BstV1I GCAGC 7 cut(s) 145, 967, 1363, 1546, 1549, 1666, 1674
BstV2I GAAGAC 2 cut(s) 501, 811
BstX2I RGATCY 3 cut(s) 901, 1272, 1728
BstYI RGATCY 3 cut(s) 901, 1272, 1728
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 3 cut(s) 702, 1312, 1455
BtsI GCAGTG 1 cut(s) 862
BtsIMutI CAGTG 4 cut(s) 533, 862, 1401, 1500
Cac8I GCNNGC 8 cut(s) 348, 690, 702, 931, 1023, 1534, 1572, 1576
CaiI CAGNNNCTG 1 cut(s) 659
CfoI GCGC 1 cut(s) 480
Csp6I GTAC 5 cut(s) 7, 648, 983, 1322, 1382
CviQI GTAC 5 cut(s) 7, 648, 983, 1322, 1382
DdeI CTNAG 4 cut(s) 638, 761, 1269, 1393
DinI GGCGCC 1 cut(s) 479
Eam1104I CTCTTC 5 cut(s) 14, 87, 92, 1412, 1748
EarI CTCTTC 5 cut(s) 14, 87, 92, 1412, 1748
Eco130I CCWWGG 1 cut(s) 1712
Eco147I AGGCCT 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 1627
Eco57I CTGAAG 1 cut(s) 1436
EcoRI GAATTC 3 cut(s) 99, 139, 1801
EcoRII CCWGG 2 cut(s) 54, 1140
EcoT14I CCWWGG 1 cut(s) 1712
EcoT22I ATGCAT 1 cut(s) 1023
EcoT38I GRGCYC 1 cut(s) 1627
EgeI GGCGCC 1 cut(s) 479
EheI GGCGCC 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 1712
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 7 cut(s) 134, 956, 1377, 1560, 1563, 1680, 1688
FokI GGATG 3 cut(s) 709, 1319, 1462
FriOI GRGCYC 1 cut(s) 1627
Fsp4HI GCNGC 7 cut(s) 134, 956, 1377, 1560, 1563, 1680, 1688
FspBI CTAG 5 cut(s) 50, 597, 930, 1221, 1475
GlaI GCGC 1 cut(s) 479
GluI GCNGC 7 cut(s) 134, 956, 1377, 1560, 1563, 1680, 1688
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 2 cut(s) 647, 1163
HaeII RGCGCY 1 cut(s) 481
HaeIII GGCC 1 cut(s) 54
HapII CCGG 2 cut(s) 12, 1632
HhaI GCGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 478
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HindIII AAGCTT 2 cut(s) 686, 1576
HinfI GANTC 3 cut(s) 530, 856, 920
HpaII CCGG 2 cut(s) 12, 1632
HphI GGTGA 1 cut(s) 526
Hpy188I TCNGA 7 cut(s) 98, 130, 184, 639, 899, 1416, 1764
Hpy188III TCNNGA 8 cut(s) 620, 841, 1268, 1279, 1455, 1610, 1632, 1750
HpyAV CCTTC 6 cut(s) 101, 496, 520, 736, 1355, 1509
HpyCH4III ACNGT 5 cut(s) 125, 537, 886, 1015, 1386
HpyCH4IV ACGT 2 cut(s) 299, 1797
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 142, 477, 710, 791, 1571
HpyF3I CTNAG 4 cut(s) 638, 761, 1269, 1393
HpySE526I ACGT 2 cut(s) 299, 1797
Hsp92I GRCGYC 1 cut(s) 478
HspAI GCGC 1 cut(s) 478
KasI GGCGCC 1 cut(s) 477
Kpn2I TCCGGA 1 cut(s) 1631
LguI GCTCTTC 1 cut(s) 1412
LmnI GCTCC 2 cut(s) 130, 1347
Lsp1109I GCAGC 7 cut(s) 145, 967, 1363, 1546, 1549, 1666, 1674
LweI GCATC 3 cut(s) 646, 687, 998
MaeI CTAG 5 cut(s) 50, 597, 930, 1221, 1475
MaeII ACGT 2 cut(s) 299, 1797
MaeIII GTNAC 5 cut(s) 119, 295, 464, 740, 1669
MflI RGATCY 3 cut(s) 901, 1272, 1728
MhlI GDGCHC 3 cut(s) 1394, 1538, 1627
Mly113I GGCGCC 1 cut(s) 478
MlyI GAGTC 2 cut(s) 865, 929
MmeI TCCRAC 2 cut(s) 22, 1266
MnlI CCTC 9 cut(s) 90, 178, 181, 687, 833, 1138, 1522, 1537, 1617
Mph1103I ATGCAT 1 cut(s) 1023
MroI TCCGGA 1 cut(s) 1631
MseI TTAA 8 cut(s) 243, 1005, 1136, 1353, 1371, 1479, 1590, 1784
MspI CCGG 2 cut(s) 12, 1632
MspR9I CCNGG 2 cut(s) 56, 1142
MvaI CCWGG 2 cut(s) 56, 1142
MwoI GCNNNNNNNGC 6 cut(s) 70, 142, 477, 710, 791, 1571
NarI GGCGCC 1 cut(s) 478
NheI GCTAGC 1 cut(s) 929
NlaIV GGNNCC 5 cut(s) 78, 479, 1213, 1349, 1730
NmuCI GTSAC 2 cut(s) 295, 740
NsiI ATGCAT 1 cut(s) 1023
NspI RCATGY 4 cut(s) 206, 447, 1025, 1574
PaeI GCATGC 2 cut(s) 1025, 1574
PceI AGGCCT 1 cut(s) 54
PciI ACATGT 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 1412
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 1 cut(s) 530
Pfl23II CGTACG 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 1285
PkrI GCNGC 7 cut(s) 135, 957, 1378, 1561, 1564, 1681, 1689
PleI GAGTC 2 cut(s) 864, 928
PluTI GGCGCC 1 cut(s) 481
PpsI GAGTC 2 cut(s) 864, 928
PscI ACATGT 1 cut(s) 443
PsiI TTATAA 1 cut(s) 1113
Psp6I CCWGG 2 cut(s) 54, 1140
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 2 cut(s) 54, 1140
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 78, 479, 1213, 1349, 1730
PstI CTGCAG 1 cut(s) 1669
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 3 cut(s) 901, 1272, 1728
RsaI GTAC 5 cut(s) 8, 649, 984, 1323, 1383
RsaNI GTAC 5 cut(s) 7, 648, 983, 1322, 1382
SapI GCTCTTC 1 cut(s) 1412
SaqAI TTAA 8 cut(s) 243, 1005, 1136, 1353, 1371, 1479, 1590, 1784
SatI GCNGC 7 cut(s) 134, 956, 1377, 1560, 1563, 1680, 1688
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 2 cut(s) 865, 929
ScrFI CCNGG 2 cut(s) 56, 1142
SduI GDGCHC 3 cut(s) 1394, 1538, 1627
SfaNI GCATC 3 cut(s) 646, 687, 998
SfcI CTRYAG 2 cut(s) 651, 1665
SfoI GGCGCC 1 cut(s) 479
SphI GCATGC 2 cut(s) 1025, 1574
SseBI AGGCCT 1 cut(s) 54
SsiI CCGC 4 cut(s) 233, 338, 1159, 1682
SspDI GGCGCC 1 cut(s) 477
SspI AATATT 1 cut(s) 771
SspMI CTAG 5 cut(s) 50, 597, 930, 1221, 1475
StuI AGGCCT 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 54, 1140
StyI CCWWGG 1 cut(s) 1712
TaaI ACNGT 5 cut(s) 125, 537, 886, 1015, 1386
TaiI ACGT 2 cut(s) 302, 1800
TaqI TCGA 1 cut(s) 331
TatI WGTACW 4 cut(s) 647, 982, 1321, 1381
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 8 cut(s) 243, 1005, 1136, 1353, 1371, 1479, 1590, 1784
Tru9I TTAA 8 cut(s) 243, 1005, 1136, 1353, 1371, 1479, 1590, 1784
TscAI CASTG 4 cut(s) 540, 869, 1401, 1507
TseFI GTSAC 2 cut(s) 295, 740
TseI GCWGC 7 cut(s) 133, 955, 1376, 1559, 1562, 1679, 1687
Tsp45I GTSAC 2 cut(s) 295, 740
TspGWI ACGGA 4 cut(s) 1076, 1181, 1241, 1713
TspRI CASTG 4 cut(s) 540, 869, 1401, 1507
Van91I CCANNNNNTGG 1 cut(s) 1285
XapI RAATTY 5 cut(s) 99, 139, 455, 890, 1801
XceI RCATGY 4 cut(s) 206, 447, 1025, 1574
XspI CTAG 5 cut(s) 50, 597, 930, 1221, 1475
ZrmI AGTACT 1 cut(s) 649
Zsp2I ATGCAT 1 cut(s) 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.