Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012999.1

Orthogroup ID

OG0007292

Physical Location & Seq

Genomic Coordinates Reverse (-)

12602 .. 17088

Gene Structure 4487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012999.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

atggcgtacgccggaaagaagagatggagaggtttggtggtaggagtcttaggcctcgttttgctttctatgctcgttcctcttctcttccttctcggtattcacaatggctttcaaggatatggttcggagcagccgaattcgcctacgcatactacgccaatcatcatcaataccaattctaatcaagccgaggaggatcatgtaaagcgtgtagagaatcttgtgaaacagcttgcaccaccaatttttcaggaaatactaaagaatatctcacacaaagctgaaaataaaaccaaaaatcagattacggtgcagaacaatgaaggaggaaaagggtttccagccccgcctcaggacgttccacaatccccttctctaaaaaataactctaaagttgatgaaaaagttgaaatgattgattatgccaaaggtggtattgatgaaagtggaaagtcatgtgaattgaaatttgggagttactgccgttggcggcaagaacataaagaagaaatgaaggattctatggtgaagagattgaaggattcactatttgtggcaagagcatattttcctaccattgcaaaacttccatctcaacgcaagttctctggtgaaatgaaacaaaacattcaagagctggagaaagttcttagtgaaagtactacagatgctgatcttccatcacagattgggaagaagcttgagaggatgcatgctgtgatagctaaagccaaaaccttccctgtggaatgtcataatgttgacaagaagctgagacaaatatttgatatgactgcagatgaagctaatttccacatgaaacaaagtgtcttcctctaccaacttgcagtccagactatgccaaagagtctccactgcttgtctatgagactgactgtggaatttttcagaaatcctgtttatgataaggagtctctagcgagcaaattcaatgatcctgcattgcagcactatgtcatactctccaccaatgtacttgcattatcagttgtaatcaactcaactgtaatgcatgcaaaagaaagtgggaaactggtttttcatgtgctgacggatcaacagaattactttgcgatgaaactatggttctttagaaatacttacaaagaagccatagttcaggtgttaaacctggaggagcttgacagccgcaaattatacctgtcgttgcctgtggagttccgtgtttcctttggcattggtgctgaagctagaacggaatacttatctattttttctcattcacactatcttcttcctgagatattcccgaatttggagaaagttgtggttttggatgaagatgttgttgtacagcaggacttgtctacactttggagccttaacatggaaggaaaagttaatgctgctgtacagttctgctctgtgaagttgagtaatcttatgaagagattcactggtgagaacagttttgataaaacctcatgtgcttggatgtctggattgaatgtcattgatctggttaagtggagagaacttgatctcactgaaacttaccgaaggtttgtaaatgaggtgagcacgcaagaggaactaaatgaagctgctgcactgtatgctagcttgctaaccttcaaggacttgatttatcctcttgatggtgtgtgggctctctccggactgggtaatgactataatatagatatgtctgcagtaataaaagctgcggtgctgcactacaacggaaagatgaaaccttggcttgatttagggatcccaaaatataaggttttctggaagaaatttctgaaccgagacgatcagttcttaactgactgcaatgtgaattcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

612

Amino Acids

69.71

Weight (kDa)

7.97

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38650 AT2G38650 AT2G38650
fragaria_vesca	FvH4_6g09030 FvH4_6g09030
malus_domestica	MD04G1181600.v1.1 MD04G1182600.v1.1 MD12G1196400.v1.1
prunus_persica	Prupe.6G301000_v2.0.a1 Prupe.6G301000_v2.0.a1
pyrus_communis	pycom04g16050 pycom12g18260
rosa_chinensis	RchiOBHm_Chr3g0459281
rosa_laevigata	RLG00000025097
rosa_multiflora	Rmu_co8275713.1_g000001 Rmu_co8401309.1_g000001 Rmu_sc0009302.1_g000001 Rmu_sc0012999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420340
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092800 Rh3BG095900 Rh3CG096900 Rh3DG096500
rosa_wichuraiana	Rw3G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1352
AccIII	TCCGGA	1 cut(s)	1661
AciI	CCGC	4 cut(s)	350, 493, 1174, 1712
AclWI	GGATC	5 cut(s)	207, 953, 1086, 1753, 1766
AcsI	RAATTY	7 cut(s)	139, 470, 905, 950, 1297, 1787, 1831
AcuI	CTGAAG	1 cut(s)	1251
AfaI	GTAC	5 cut(s)	8, 664, 999, 1338, 1398
AfiI	CCNNNNNNNGG	4 cut(s)	355, 1300, 1372, 1643
AgsI	TTSAA	8 cut(s)	116, 413, 469, 541, 635, 955, 1492, 1621
AjnI	CCWGG	1 cut(s)	1155
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
Alw21I	GWGCWC	1 cut(s)	1568
Alw26I	GTCTC	5 cut(s)	772, 878, 886, 942, 1794
AlwI	GGATC	5 cut(s)	207, 953, 1086, 1753, 1766
AlwNI	CAGNNNCTG	1 cut(s)	674
Aor13HI	TCCGGA	1 cut(s)	1661
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	7 cut(s)	133, 970, 1391, 1589, 1592, 1709, 1717
ApoI	RAATTY	7 cut(s)	139, 470, 905, 950, 1297, 1787, 1831
Asp700I	GAANNNNTTC	1 cut(s)	1436
AsuHPI	GGTGA	4 cut(s)	541, 626, 1457, 1573
AsuNHI	GCTAGC	1 cut(s)	1604
AxyI	CCTNAGG	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	1758
BanII	GRGCYC	1 cut(s)	1657
BbsI	GAAGAC	1 cut(s)	826
Bbv12I	GWGCWC	1 cut(s)	1568
BbvI	GCAGC	7 cut(s)	145, 982, 1378, 1576, 1579, 1696, 1704
BccI	CCATC	4 cut(s)	18, 601, 691, 1637
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	1157
BcoDI	GTCTC	5 cut(s)	772, 878, 886, 942, 1794
BfaI	CTAG	3 cut(s)	941, 1236, 1605
BfmI	CTRYAG	3 cut(s)	666, 798, 1695
BisI	GCNGC	9 cut(s)	134, 494, 971, 1174, 1392, 1590, 1593, 1710, 1718
BlsI	GCNGC	9 cut(s)	135, 495, 972, 1175, 1393, 1591, 1594, 1711, 1719
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	1 cut(s)	1157
BmiI	GGNNCC	2 cut(s)	1364, 1760
BmrFI	CCNGG	1 cut(s)	1157
BmrI	ACTGGG	1 cut(s)	1676
BmsI	GCATC	2 cut(s)	661, 702
BmtI	GCTAGC	1 cut(s)	1608
BmuI	ACTGGG	1 cut(s)	1676
BpiI	GAAGAC	1 cut(s)	826
BpmI	CTGGAG	2 cut(s)	662, 1178
BpuEI	CTTGAG	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	192, 1742
BsaWI	WCCGGW	1 cut(s)	1661
Bsc4I	CCNNNNNNNGG	4 cut(s)	355, 1300, 1372, 1643
Bse1I	ACTGG	3 cut(s)	1062, 1447, 1671
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	3 cut(s)	579, 965, 1831
Bse8I	GATNNNNATC	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	1661
BseBI	CCWGG	1 cut(s)	1157
BseDI	CCNNGG	2 cut(s)	192, 1742
BseGI	GGATG	3 cut(s)	717, 1327, 1485
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	4 cut(s)	355, 1300, 1372, 1643
BseMI	GCAATG	3 cut(s)	579, 965, 1831
BseMII	CTCAG	3 cut(s)	368, 767, 1275
BseNI	ACTGG	3 cut(s)	1062, 1447, 1671
BseRI	GAGGAG	2 cut(s)	209, 1175
BseXI	GCAGC	7 cut(s)	145, 982, 1378, 1576, 1579, 1696, 1704
BsgI	GTGCAG	3 cut(s)	335, 1578, 1703
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	1568
BsiSI	CCGG	2 cut(s)	12, 1662
BsiWI	CGTACG	1 cut(s)	6
BslI	CCNNNNNNNGG	4 cut(s)	355, 1300, 1372, 1643
BsmAI	GTCTC	5 cut(s)	772, 878, 886, 942, 1794
BsmBI	CGTCTC	1 cut(s)	1794
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	1568, 1657
Bsp13I	TCCGGA	1 cut(s)	1661
Bsp1407I	TGTACA	2 cut(s)	1336, 1396
Bsp143I	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
BspACI	CCGC	4 cut(s)	350, 493, 1174, 1712
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	3 cut(s)	367, 768, 1276
BspEI	TCCGGA	1 cut(s)	1661
BspLI	GGNNCC	2 cut(s)	1364, 1760
BspMAI	CTGCAG	2 cut(s)	802, 1699
BspOI	GCTAGC	1 cut(s)	1608
BspPI	GGATC	5 cut(s)	207, 953, 1086, 1753, 1766
BsrDI	GCAATG	3 cut(s)	579, 965, 1831
BsrGI	TGTACA	2 cut(s)	1336, 1396
BsrI	ACTGG	3 cut(s)	1062, 1447, 1671
BssECI	CCNNGG	2 cut(s)	192, 1742
BssMI	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
BssT1I	CCWWGG	1 cut(s)	1742
Bst2UI	CCWGG	1 cut(s)	1157
Bst4CI	ACNGT	6 cut(s)	313, 901, 1030, 1401, 1454, 1599
Bst6I	CTCTTC	5 cut(s)	14, 87, 92, 527, 1427
BstAPI	GCANNNNNTGC	1 cut(s)	1601
BstAUI	TGTACA	2 cut(s)	1336, 1396
BstC8I	GCNNGC	7 cut(s)	237, 717, 946, 1038, 1568, 1606, 1610
BstDEI	CTNAG	5 cut(s)	49, 354, 653, 776, 1284
BstF5I	GGATG	3 cut(s)	717, 1327, 1485
BstKTI	GATC	8 cut(s)	202, 679, 961, 1081, 1504, 1528, 1761, 1807
BstMAI	GTCTC	5 cut(s)	772, 878, 886, 942, 1794
BstMBI	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
BstMWI	GCNNNNNNNGC	6 cut(s)	70, 142, 157, 725, 806, 1601
BstNI	CCWGG	1 cut(s)	1157
BstNSI	RCATGY	2 cut(s)	719, 1040
BstSCI	CCNGG	1 cut(s)	1155
BstSFI	CTRYAG	3 cut(s)	666, 798, 1695
BstV1I	GCAGC	7 cut(s)	145, 982, 1378, 1576, 1579, 1696, 1704
BstV2I	GAAGAC	1 cut(s)	826
BstX2I	RGATCY	1 cut(s)	1758
BstYI	RGATCY	1 cut(s)	1758
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	1112
BtsCI	GGATG	3 cut(s)	717, 1327, 1485
BtsI	GCAGTG	1 cut(s)	877
BtsIMutI	CAGTG	4 cut(s)	877, 1440, 1530, 1595
Cac8I	GCNNGC	7 cut(s)	237, 717, 946, 1038, 1568, 1606, 1610
CaiI	CAGNNNCTG	1 cut(s)	674
Csp6I	GTAC	5 cut(s)	7, 663, 998, 1337, 1397
CviAII	CATG	8 cut(s)	203, 459, 716, 820, 1037, 1067, 1372, 1470
CviQI	GTAC	5 cut(s)	7, 663, 998, 1337, 1397
DdeI	CTNAG	5 cut(s)	49, 354, 653, 776, 1284
DpnI	GATC	8 cut(s)	201, 678, 960, 1080, 1503, 1527, 1760, 1806
DpnII	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
Eam1104I	CTCTTC	5 cut(s)	14, 87, 92, 527, 1427
EarI	CTCTTC	5 cut(s)	14, 87, 92, 527, 1427
Eco130I	CCWWGG	1 cut(s)	1742
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	1657
Eco57I	CTGAAG	1 cut(s)	1251
Eco81I	CCTNAGG	1 cut(s)	354
EcoRI	GAATTC	2 cut(s)	139, 1831
EcoRII	CCWGG	1 cut(s)	1155
EcoT14I	CCWWGG	1 cut(s)	1742
EcoT22I	ATGCAT	2 cut(s)	717, 1038
EcoT38I	GRGCYC	1 cut(s)	1657
ErhI	CCWWGG	1 cut(s)	1742
Esp3I	CGTCTC	1 cut(s)	1794
FaeI	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
FatI	CATG	8 cut(s)	202, 458, 715, 819, 1036, 1066, 1371, 1469
FauI	CCCGC	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	1352
Fnu4HI	GCNGC	9 cut(s)	134, 494, 971, 1174, 1392, 1590, 1593, 1710, 1718
FokI	GGATG	3 cut(s)	724, 1334, 1492
FriOI	GRGCYC	1 cut(s)	1657
Fsp4HI	GCNGC	9 cut(s)	134, 494, 971, 1174, 1392, 1590, 1593, 1710, 1718
FspBI	CTAG	3 cut(s)	941, 1236, 1605
GluI	GCNGC	9 cut(s)	134, 494, 971, 1174, 1392, 1590, 1593, 1710, 1718
GsuI	CTGGAG	2 cut(s)	662, 1178
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	2 cut(s)	12, 1662
Hin1II	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	7 cut(s)	45, 220, 521, 545, 871, 935, 1437
HpaII	CCGG	2 cut(s)	12, 1662
HphI	GGTGA	4 cut(s)	541, 626, 1457, 1573
Hpy166II	GTNNAC	2 cut(s)	766, 1353
Hpy188I	TCNGA	4 cut(s)	130, 306, 914, 1794
Hpy8I	GTNNAC	2 cut(s)	766, 1353
HpyAV	CCTTC	9 cut(s)	101, 320, 384, 511, 535, 751, 1370, 1539, 1627
HpyCH4III	ACNGT	6 cut(s)	313, 901, 1030, 1401, 1454, 1599
HpyCH4IV	ACGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	6 cut(s)	70, 142, 157, 725, 806, 1601
HpyF3I	CTNAG	5 cut(s)	49, 354, 653, 776, 1284
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
Kpn2I	TCCGGA	1 cut(s)	1661
Kzo9I	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
LmnI	GCTCC	3 cut(s)	130, 1162, 1362
Lsp1109I	GCAGC	7 cut(s)	145, 982, 1378, 1576, 1579, 1696, 1704
LweI	GCATC	2 cut(s)	661, 702
MaeI	CTAG	3 cut(s)	941, 1236, 1605
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	8 cut(s)	201, 678, 960, 1080, 1503, 1527, 1760, 1806
MboI	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
MflI	RGATCY	1 cut(s)	1758
MhlI	GDGCHC	2 cut(s)	1568, 1657
MlyI	GAGTC	3 cut(s)	54, 880, 944
Mph1103I	ATGCAT	2 cut(s)	717, 1038
MroI	TCCGGA	1 cut(s)	1661
MroXI	GAANNNNTTC	1 cut(s)	1436
MseI	TTAA	5 cut(s)	1151, 1368, 1386, 1509, 1814
MspI	CCGG	2 cut(s)	12, 1662
MspR9I	CCNGG	1 cut(s)	1157
MvaI	CCWGG	1 cut(s)	1157
MwoI	GCNNNNNNNGC	6 cut(s)	70, 142, 157, 725, 806, 1601
NdeII	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
NheI	GCTAGC	1 cut(s)	1604
NlaIII	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
NlaIV	GGNNCC	2 cut(s)	1364, 1760
NmeAIII	GCCGAG	1 cut(s)	217
NsiI	ATGCAT	2 cut(s)	717, 1038
NspI	RCATGY	2 cut(s)	719, 1040
PaeI	GCATGC	2 cut(s)	719, 1040
PceI	AGGCCT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	1436
PfeI	GAWTC	4 cut(s)	220, 521, 545, 1437
Pfl23II	CGTACG	1 cut(s)	6
PkrI	GCNGC	9 cut(s)	135, 495, 972, 1175, 1393, 1591, 1594, 1711, 1719
PleI	GAGTC	3 cut(s)	53, 879, 943
PpsI	GAGTC	3 cut(s)	53, 879, 943
Psp6I	CCWGG	1 cut(s)	1155
PspGI	CCWGG	1 cut(s)	1155
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	1364, 1760
PstI	CTGCAG	2 cut(s)	802, 1699
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	1758
RsaI	GTAC	5 cut(s)	8, 664, 999, 1338, 1398
RsaNI	GTAC	5 cut(s)	7, 663, 998, 1337, 1397
SaqAI	TTAA	5 cut(s)	1151, 1368, 1386, 1509, 1814
SatI	GCNGC	9 cut(s)	134, 494, 971, 1174, 1392, 1590, 1593, 1710, 1718
Sau3AI	GATC	8 cut(s)	199, 676, 958, 1078, 1501, 1525, 1758, 1804
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	3 cut(s)	54, 880, 944
ScrFI	CCNGG	1 cut(s)	1157
SduI	GDGCHC	2 cut(s)	1568, 1657
SfaNI	GCATC	2 cut(s)	661, 702
SfcI	CTRYAG	3 cut(s)	666, 798, 1695
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SphI	GCATGC	2 cut(s)	719, 1040
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	4 cut(s)	350, 493, 1174, 1712
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	3 cut(s)	941, 1236, 1605
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	1155
StyI	CCWWGG	1 cut(s)	1742
TaaI	ACNGT	6 cut(s)	313, 901, 1030, 1401, 1454, 1599
TaiI	ACGT	1 cut(s)	363
TatI	WGTACW	4 cut(s)	662, 997, 1336, 1396
TauI	GCSGC	2 cut(s)	496, 1176
TfiI	GAWTC	4 cut(s)	220, 521, 545, 1437
Tru1I	TTAA	5 cut(s)	1151, 1368, 1386, 1509, 1814
Tru9I	TTAA	5 cut(s)	1151, 1368, 1386, 1509, 1814
TscAI	CASTG	4 cut(s)	884, 1447, 1537, 1602
TseI	GCWGC	7 cut(s)	133, 970, 1391, 1589, 1592, 1709, 1717
TspGWI	ACGGA	4 cut(s)	1091, 1196, 1256, 1743
TspRI	CASTG	4 cut(s)	884, 1447, 1537, 1602
XapI	RAATTY	7 cut(s)	139, 470, 905, 950, 1297, 1787, 1831
XceI	RCATGY	2 cut(s)	719, 1040
XmiI	GTMKAC	1 cut(s)	1352
XmnI	GAANNNNTTC	1 cut(s)	1436
XspI	CTAG	3 cut(s)	941, 1236, 1605
ZrmI	AGTACT	1 cut(s)	664
Zsp2I	ATGCAT	2 cut(s)	717, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.