Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8275713.1

Orthogroup ID

OG0007292

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 828

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8275713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 737 bp

tagcgagcaaattcaatgatcctgcattgcagcactatgtcatactctccaccaatgtacttgcattatcagttgtaatcaactcaactgtaatgcatgcaaaagaaagtgggaaactggtttttcatgtgctgacggatcaacagaattactttgcgatgaaactatggttctttagaaatacttacaaagaagccatagttcaggtgttaaacctggaggagcttgacagccgcaaattatacctgtcgttgcctgtggagttccgtgtttcctttggcattggtgctgaagctagaacggaatacttatctattttttctcattcacactatcttcttcctgagatattcccgaatttggagaaagttgtggttttggatgaagatgttgttgtacagcaggacttgtctacactttggagccttaacatggaaggaaaagttaatgctgctgtacagttctgctctgtgaagttgagtaatcttatgaagagattcactggtgagaacagttttgataaaacctcatgtgcttggatgtctggattgaatgtcattgatctggttaagtggagagaacttgatctcactgaaacttaccgaaggtttgtaaatgaggtgagtatcattgcaagttgtcctaatatctatgatcagagcagttattctgagttacctgaggttttgatgatgctttgcattgaaccatatataaaacataggaaaataaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

244

Amino Acids

28.11

Weight (kDa)

5.72

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38650 AT2G38650 AT2G38650
fragaria_vesca	FvH4_6g09030 FvH4_6g09030
malus_domestica	MD04G1181600.v1.1 MD04G1182600.v1.1 MD12G1196400.v1.1
prunus_persica	Prupe.6G301000_v2.0.a1 Prupe.6G301000_v2.0.a1
pyrus_communis	pycom04g16050 pycom12g18260
rosa_chinensis	RchiOBHm_Chr3g0459281
rosa_laevigata	RLG00000025097
rosa_multiflora	Rmu_co8275713.1_g000001 Rmu_co8401309.1_g000001 Rmu_sc0009302.1_g000001 Rmu_sc0012999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420340
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092800 Rh3BG095900 Rh3CG096900 Rh3DG096500
rosa_wichuraiana	Rw3G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	412
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	2 cut(s)	13, 146
AcsI	RAATTY	2 cut(s)	10, 357
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	3 cut(s)	59, 398, 458
AfiI	CCNNNNNNNGG	2 cut(s)	360, 432
AgsI	TTSAA	3 cut(s)	15, 552, 706
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	2 cut(s)	225, 295
AluI	AGCT	2 cut(s)	225, 295
AlwI	GGATC	2 cut(s)	13, 146
ApeKI	GCWGC	2 cut(s)	30, 451
ApoI	RAATTY	2 cut(s)	10, 357
Asp700I	GAANNNNTTC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	517, 633
AxyI	CCTNAGG	1 cut(s)	680
BbvI	GCAGC	2 cut(s)	42, 438
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	1 cut(s)	654
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	3 cut(s)	31, 234, 452
BlsI	GCNGC	3 cut(s)	32, 235, 453
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 432
Bse1I	ACTGG	2 cut(s)	122, 507
Bse21I	CCTNAGG	1 cut(s)	680
Bse3DI	GCAATG	2 cut(s)	25, 629
BseBI	CCWGG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	387, 545
BseLI	CCNNNNNNNGG	2 cut(s)	360, 432
BseMI	GCAATG	2 cut(s)	25, 629
BseMII	CTCAG	3 cut(s)	335, 662, 671
BseNI	ACTGG	2 cut(s)	122, 507
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	42, 438
BslI	CCNNNNNNNGG	2 cut(s)	360, 432
Bsp1407I	TGTACA	2 cut(s)	396, 456
Bsp143I	GATC	5 cut(s)	18, 138, 561, 585, 654
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	3 cut(s)	336, 663, 672
BspLI	GGNNCC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	13, 146
BsrDI	GCAATG	2 cut(s)	25, 629
BsrGI	TGTACA	2 cut(s)	396, 456
BsrI	ACTGG	2 cut(s)	122, 507
BssMI	GATC	5 cut(s)	18, 138, 561, 585, 654
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	3 cut(s)	90, 461, 514
Bst6I	CTCTTC	1 cut(s)	487
BstAUI	TGTACA	2 cut(s)	396, 456
BstC8I	GCNNGC	2 cut(s)	6, 98
BstDEI	CTNAG	3 cut(s)	344, 671, 680
BstF5I	GGATG	2 cut(s)	387, 545
BstKTI	GATC	5 cut(s)	21, 141, 564, 588, 657
BstMBI	GATC	5 cut(s)	18, 138, 561, 585, 654
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	42, 438
Bsu36I	CCTNAGG	1 cut(s)	680
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	387, 545
BtsIMutI	CAGTG	2 cut(s)	500, 590
Cac8I	GCNNGC	2 cut(s)	6, 98
Csp6I	GTAC	3 cut(s)	58, 397, 457
CviAII	CATG	4 cut(s)	97, 127, 432, 530
CviJI	RGCY	5 cut(s)	196, 225, 233, 295, 425
CviKI_1	RGCY	5 cut(s)	196, 225, 233, 295, 425
CviQI	GTAC	3 cut(s)	58, 397, 457
DdeI	CTNAG	3 cut(s)	344, 671, 680
DpnI	GATC	5 cut(s)	20, 140, 563, 587, 656
DpnII	GATC	5 cut(s)	18, 138, 561, 585, 654
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	215
EcoT22I	ATGCAT	1 cut(s)	98
FaeI	CATG	4 cut(s)	100, 130, 435, 533
FatI	CATG	4 cut(s)	96, 126, 431, 529
FbaI	TGATCA	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	31, 234, 452
FokI	GGATG	2 cut(s)	394, 552
Fsp4HI	GCNGC	3 cut(s)	31, 234, 452
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	3 cut(s)	31, 234, 452
GsuI	CTGGAG	1 cut(s)	238
Hin1II	CATG	4 cut(s)	100, 130, 435, 533
HinfI	GANTC	1 cut(s)	497
HphI	GGTGA	2 cut(s)	517, 633
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	659, 672
Hpy188III	TCNNGA	3 cut(s)	343, 354, 545
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	2 cut(s)	430, 599
HpyCH4III	ACNGT	3 cut(s)	90, 461, 514
HpyCH4V	TGCA	7 cut(s)	25, 30, 64, 96, 100, 634, 701
HpyF3I	CTNAG	3 cut(s)	344, 671, 680
Hsp92II	CATG	4 cut(s)	100, 130, 435, 533
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	5 cut(s)	18, 138, 561, 585, 654
LmnI	GCTCC	2 cut(s)	222, 422
Lsp1109I	GCAGC	2 cut(s)	42, 438
LweI	GCATC	1 cut(s)	683
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	5 cut(s)	20, 140, 563, 587, 656
MboI	GATC	5 cut(s)	18, 138, 561, 585, 654
MboII	GAAGA	4 cut(s)	328, 331, 397, 504
MluCI	AATT	4 cut(s)	10, 147, 238, 357
MnlI	CCTC	4 cut(s)	213, 537, 612, 675
Mph1103I	ATGCAT	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	4 cut(s)	211, 428, 446, 569
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
NdeII	GATC	5 cut(s)	18, 138, 561, 585, 654
NlaIII	CATG	4 cut(s)	100, 130, 435, 533
NlaIV	GGNNCC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	98
NspI	RCATGY	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	3 cut(s)	32, 235, 453
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	424
RsaI	GTAC	3 cut(s)	59, 398, 458
RsaNI	GTAC	3 cut(s)	58, 397, 457
SaqAI	TTAA	4 cut(s)	211, 428, 446, 569
SatI	GCNGC	3 cut(s)	31, 234, 452
Sau3AI	GATC	5 cut(s)	18, 138, 561, 585, 654
ScrFI	CCNGG	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	683
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	4 cut(s)	10, 147, 238, 357
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	215
TaaI	ACNGT	3 cut(s)	90, 461, 514
TasI	AATT	4 cut(s)	10, 147, 238, 357
TatI	WGTACW	3 cut(s)	57, 396, 456
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	4 cut(s)	211, 428, 446, 569
Tru9I	TTAA	4 cut(s)	211, 428, 446, 569
TscAI	CASTG	2 cut(s)	507, 597
TseI	GCWGC	2 cut(s)	30, 451
TspDTI	ATGAA	4 cut(s)	115, 175, 398, 505
TspGWI	ACGGA	3 cut(s)	151, 256, 316
TspRI	CASTG	2 cut(s)	507, 597
XapI	RAATTY	2 cut(s)	10, 357
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.