Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007292

Physical Location & Seq

Genomic Coordinates Forward (+)

7415423 .. 7420295

Gene Structure 4873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGCGTACGCCGGAAAGAAGAGATGGAGAGGTTTGGTGGTAGGAGTCTTAGGCCTCGTTTTGCTTTCTATGCTCGTTCCTCTTCTCTTCCTTCTCGGTATTCACAATGGCTTTCAAGGATATGGTTCGGAGCAGCCGAATTCGCCTACGCATACTACACCAATCATCATCAATACCAATTCTAATCAAGCCGAGGAGGATCATGTAAAGCGTGTAGAGAATCTTGTGAAACAGCTTGCACCACCAATTTTTCAGGAAATACTAAAGAATATCTCACACAAAGCTGAAAATAAAACGAAAAATCAGGTTACGGTGCAGAACAATGAAGGAGGAAAAGGGTTTCCAGCCCCGCCTCAGGACGTTCCACAATCCCCTTCTCTAAAAAATAACTCTAAAGTTGATGAAAAAGTTGAAATGATTGATTATGCCAAAGGTGGTATTGATGAAAGTGGAAAGTCATGTGAATTGAAATTTGGGAGTTACTGCCTTTGGCGGCAAGAACATAAAGAAGAAATGAAGGATTCTATGGTGAAGAGATTGAAGGATTCACTATTTGTGGCAAGAGCATATTTTCCTACCATTGCAAAACTTCCATCTCAACGCAAGTTCTCTGGTGAAATGAAACAAAACATTCAAGAGCTGGAGAAAGTTCTTAGTGAAAGTACTACAGATGCTGATCTTCCATCACAGATTGGGAAGAAGCTTGAGAGGATGCATGCTGTGATAGCTAAAGCCAAAACCTTCCCTGTGGAATGTCATAATGTTGACAAGAAGCTGAGACAAATATTTGATATGACTGCAGATGAAGCTAATTTCCACATGAAACAAAGTGTCTTCCTCTACCAACTTGCAGTCCAGACTATGCCAAAGAGTCTCCACTGCTTGTCTATGAGACTGACTGTGGAATTTTTCAGAAATCCTGTTTATGATAAGGAGTCTCTAGCGAGCAAATTCAATGATCCTGCATTGCAGCACTATGTCATACTCTCCACCAATGTACTTGCATTATCAGTTGAAAGTGGGAAACTGGTTTTTCATGTGCTGACGGATCAACAGAATTACTTTGCGATGAAACTATGGTTCTTTAGAAATACTTACAAAGAAGCCATAGTTCAGGTGTTAAACCTGGAGGAGCTTGACAGCCGCAAATTATACCTGTCGTTGCCTGTGGAGTTCCGTGTTTCCTTTGGCATTGATATTAATTTCACAAGTTGTGGTTTTGGGAAAGTGCAGGACTTGTCTACACTTTGGAGCCTTAACATGGAAGGAAAAGTTAATGCTGCTGTACAGTTCTGCTCTGTGAAGTTGAGTAATCTTATGAAGAGATTCACTGGTGAGAACAGTTTTGATAAAACCTCATGTGCTTGGATGTCTGGATTGAATGTCATTGATCTGGTTAAGTGGAGAGAACTTGATCTCACTGAAACTTACCGAAGGTTTGTAAATGAGGTGAGCACGCAAGAGGAACTAAATGAAGCTGCTGCACTGTATGCTAGCTTGCTAACCTTCAAGGACTTGATTTATCCTCTTGATGGTGTGTGGGCTCTCTCCGGACTGGGTAATGACTATAATATAGATATGTCTGCAGTAATAAAAGCTGCGGTGCTGCACTACAACGGAAAGATGAAACCTTGGCTTGATTTAGGGATCCCAAAATATAAGGTTTTCTGGAAGAAATTTCTGAACCGAGACGATCAGTTCTTAACTGACTGCAATGTGAATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

575

Amino Acids

65.4

Weight (kDa)

8.51

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAUT_1	PF25557	173 - 248	3.7e-24	Galacturonosyltransferase domain 1
Glyco_transf_8	PF01501	411 - 547	3.5e-23	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38650 AT2G38650 AT2G38650
fragaria_vesca	FvH4_6g09030 FvH4_6g09030
malus_domestica	MD04G1181600.v1.1 MD04G1182600.v1.1 MD12G1196400.v1.1
prunus_persica	Prupe.6G301000_v2.0.a1 Prupe.6G301000_v2.0.a1
pyrus_communis	pycom04g16050 pycom12g18260
rosa_chinensis	RchiOBHm_Chr3g0459281
rosa_laevigata	RLG00000025097
rosa_multiflora	Rmu_co8275713.1_g000001 Rmu_co8401309.1_g000001 Rmu_sc0009302.1_g000001 Rmu_sc0012999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420340
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092800 Rh3BG095900 Rh3CG096900 Rh3DG096500
rosa_wichuraiana	Rw3G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1241
AccIII	TCCGGA	1 cut(s)	1550
AciI	CCGC	4 cut(s)	350, 493, 1144, 1601
AclWI	GGATC	5 cut(s)	207, 953, 1056, 1642, 1655
AcsI	RAATTY	6 cut(s)	139, 470, 905, 950, 1676, 1720
AfaI	GTAC	4 cut(s)	8, 664, 999, 1287
AfiI	CCNNNNNNNGG	3 cut(s)	355, 1261, 1532
AgsI	TTSAA	9 cut(s)	116, 413, 469, 541, 635, 955, 1016, 1381, 1510
AjnI	CCWGG	1 cut(s)	1125
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
Alw21I	GWGCWC	1 cut(s)	1457
Alw26I	GTCTC	5 cut(s)	772, 878, 886, 942, 1683
AlwI	GGATC	5 cut(s)	207, 953, 1056, 1642, 1655
AlwNI	CAGNNNCTG	1 cut(s)	674
Aor13HI	TCCGGA	1 cut(s)	1550
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	7 cut(s)	133, 970, 1280, 1478, 1481, 1598, 1606
ApoI	RAATTY	6 cut(s)	139, 470, 905, 950, 1676, 1720
AseI	ATTAAT	1 cut(s)	1200
Asp700I	GAANNNNTTC	1 cut(s)	1325
AsuHPI	GGTGA	4 cut(s)	541, 626, 1346, 1462
AsuNHI	GCTAGC	1 cut(s)	1493
AxyI	CCTNAGG	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	1647
BanII	GRGCYC	1 cut(s)	1546
BbsI	GAAGAC	1 cut(s)	826
Bbv12I	GWGCWC	1 cut(s)	1457
BbvI	GCAGC	7 cut(s)	145, 982, 1267, 1465, 1468, 1585, 1593
BccI	CCATC	4 cut(s)	18, 601, 691, 1526
BciT130I	CCWGG	1 cut(s)	1127
BcoDI	GTCTC	5 cut(s)	772, 878, 886, 942, 1683
BfaI	CTAG	2 cut(s)	941, 1494
BfmI	CTRYAG	3 cut(s)	666, 798, 1584
BisI	GCNGC	9 cut(s)	134, 494, 971, 1144, 1281, 1479, 1482, 1599, 1607
BlsI	GCNGC	9 cut(s)	135, 495, 972, 1145, 1282, 1480, 1483, 1600, 1608
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	1 cut(s)	1127
BmiI	GGNNCC	2 cut(s)	1253, 1649
BmrFI	CCNGG	1 cut(s)	1127
BmrI	ACTGGG	1 cut(s)	1565
BmsI	GCATC	2 cut(s)	661, 702
BmtI	GCTAGC	1 cut(s)	1497
BmuI	ACTGGG	1 cut(s)	1565
BpiI	GAAGAC	1 cut(s)	826
BpmI	CTGGAG	2 cut(s)	662, 1148
BpuEI	CTTGAG	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	192, 1631
BsaWI	WCCGGW	1 cut(s)	1550
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 1261, 1532
Bse1I	ACTGG	3 cut(s)	1032, 1336, 1560
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	3 cut(s)	579, 965, 1720
Bse8I	GATNNNNATC	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	1550
BseBI	CCWGG	1 cut(s)	1127
BseDI	CCNNGG	2 cut(s)	192, 1631
BseGI	GGATG	2 cut(s)	717, 1374
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	3 cut(s)	355, 1261, 1532
BseMI	GCAATG	3 cut(s)	579, 965, 1720
BseMII	CTCAG	2 cut(s)	368, 767
BseNI	ACTGG	3 cut(s)	1032, 1336, 1560
BseRI	GAGGAG	2 cut(s)	209, 1145
BseXI	GCAGC	7 cut(s)	145, 982, 1267, 1465, 1468, 1585, 1593
BsgI	GTGCAG	4 cut(s)	335, 1250, 1467, 1592
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	1457
BsiSI	CCGG	2 cut(s)	12, 1551
BsiWI	CGTACG	1 cut(s)	6
BslI	CCNNNNNNNGG	3 cut(s)	355, 1261, 1532
BsmAI	GTCTC	5 cut(s)	772, 878, 886, 942, 1683
BsmBI	CGTCTC	1 cut(s)	1683
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	1457, 1546
Bsp13I	TCCGGA	1 cut(s)	1550
Bsp1407I	TGTACA	1 cut(s)	1285
Bsp143I	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
BspACI	CCGC	4 cut(s)	350, 493, 1144, 1601
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	367, 768
BspEI	TCCGGA	1 cut(s)	1550
BspLI	GGNNCC	2 cut(s)	1253, 1649
BspMAI	CTGCAG	2 cut(s)	802, 1588
BspOI	GCTAGC	1 cut(s)	1497
BspPI	GGATC	5 cut(s)	207, 953, 1056, 1642, 1655
BsrDI	GCAATG	3 cut(s)	579, 965, 1720
BsrGI	TGTACA	1 cut(s)	1285
BsrI	ACTGG	3 cut(s)	1032, 1336, 1560
BssECI	CCNNGG	2 cut(s)	192, 1631
BssMI	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
BssT1I	CCWWGG	1 cut(s)	1631
Bst2UI	CCWGG	1 cut(s)	1127
Bst4CI	ACNGT	5 cut(s)	313, 901, 1290, 1343, 1488
Bst6I	CTCTTC	5 cut(s)	14, 87, 92, 527, 1316
BstAPI	GCANNNNNTGC	1 cut(s)	1490
BstAUI	TGTACA	1 cut(s)	1285
BstC8I	GCNNGC	6 cut(s)	237, 717, 946, 1457, 1495, 1499
BstDEI	CTNAG	4 cut(s)	49, 354, 653, 776
BstF5I	GGATG	2 cut(s)	717, 1374
BstKTI	GATC	8 cut(s)	202, 679, 961, 1051, 1393, 1417, 1650, 1696
BstMAI	GTCTC	5 cut(s)	772, 878, 886, 942, 1683
BstMBI	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 142, 725, 806, 1490
BstNI	CCWGG	1 cut(s)	1127
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	1 cut(s)	1125
BstSFI	CTRYAG	3 cut(s)	666, 798, 1584
BstV1I	GCAGC	7 cut(s)	145, 982, 1267, 1465, 1468, 1585, 1593
BstV2I	GAAGAC	1 cut(s)	826
BstX2I	RGATCY	1 cut(s)	1647
BstYI	RGATCY	1 cut(s)	1647
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	1082
BtsCI	GGATG	2 cut(s)	717, 1374
BtsI	GCAGTG	1 cut(s)	877
BtsIMutI	CAGTG	4 cut(s)	877, 1329, 1419, 1484
Cac8I	GCNNGC	6 cut(s)	237, 717, 946, 1457, 1495, 1499
CaiI	CAGNNNCTG	1 cut(s)	674
Csp6I	GTAC	4 cut(s)	7, 663, 998, 1286
CviAII	CATG	7 cut(s)	203, 459, 716, 820, 1037, 1261, 1359
CviQI	GTAC	4 cut(s)	7, 663, 998, 1286
DdeI	CTNAG	4 cut(s)	49, 354, 653, 776
DpnI	GATC	8 cut(s)	201, 678, 960, 1050, 1392, 1416, 1649, 1695
DpnII	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
Eam1104I	CTCTTC	5 cut(s)	14, 87, 92, 527, 1316
EarI	CTCTTC	5 cut(s)	14, 87, 92, 527, 1316
Eco130I	CCWWGG	1 cut(s)	1631
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	1546
Eco81I	CCTNAGG	1 cut(s)	354
EcoRI	GAATTC	2 cut(s)	139, 1720
EcoRII	CCWGG	1 cut(s)	1125
EcoT14I	CCWWGG	1 cut(s)	1631
EcoT22I	ATGCAT	1 cut(s)	717
EcoT38I	GRGCYC	1 cut(s)	1546
ErhI	CCWWGG	1 cut(s)	1631
Esp3I	CGTCTC	1 cut(s)	1683
FaeI	CATG	7 cut(s)	206, 462, 719, 823, 1040, 1264, 1362
FatI	CATG	7 cut(s)	202, 458, 715, 819, 1036, 1260, 1358
FauI	CCCGC	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	1241
Fnu4HI	GCNGC	9 cut(s)	134, 494, 971, 1144, 1281, 1479, 1482, 1599, 1607
FokI	GGATG	2 cut(s)	724, 1381
FriOI	GRGCYC	1 cut(s)	1546
Fsp4HI	GCNGC	9 cut(s)	134, 494, 971, 1144, 1281, 1479, 1482, 1599, 1607
FspBI	CTAG	2 cut(s)	941, 1494
GluI	GCNGC	9 cut(s)	134, 494, 971, 1144, 1281, 1479, 1482, 1599, 1607
GsuI	CTGGAG	2 cut(s)	662, 1148
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	2 cut(s)	12, 1551
Hin1II	CATG	7 cut(s)	206, 462, 719, 823, 1040, 1264, 1362
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	7 cut(s)	45, 220, 521, 545, 871, 935, 1326
HpaII	CCGG	2 cut(s)	12, 1551
HphI	GGTGA	4 cut(s)	541, 626, 1346, 1462
Hpy166II	GTNNAC	2 cut(s)	766, 1242
Hpy188I	TCNGA	3 cut(s)	130, 914, 1683
Hpy188III	TCNNGA	8 cut(s)	254, 356, 635, 856, 1374, 1529, 1551, 1669
Hpy8I	GTNNAC	2 cut(s)	766, 1242
HpyAV	CCTTC	9 cut(s)	101, 320, 384, 511, 535, 751, 1259, 1428, 1516
HpyCH4III	ACNGT	5 cut(s)	313, 901, 1290, 1343, 1488
HpyCH4IV	ACGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 142, 725, 806, 1490
HpyF3I	CTNAG	4 cut(s)	49, 354, 653, 776
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	7 cut(s)	206, 462, 719, 823, 1040, 1264, 1362
Kpn2I	TCCGGA	1 cut(s)	1550
Kzo9I	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
LmnI	GCTCC	3 cut(s)	130, 1132, 1251
Lsp1109I	GCAGC	7 cut(s)	145, 982, 1267, 1465, 1468, 1585, 1593
LweI	GCATC	2 cut(s)	661, 702
MaeI	CTAG	2 cut(s)	941, 1494
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	307, 479
MalI	GATC	8 cut(s)	201, 678, 960, 1050, 1392, 1416, 1649, 1695
MboI	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
MflI	RGATCY	1 cut(s)	1647
MhlI	GDGCHC	2 cut(s)	1457, 1546
MlyI	GAGTC	3 cut(s)	54, 880, 944
Mph1103I	ATGCAT	1 cut(s)	717
MroI	TCCGGA	1 cut(s)	1550
MroXI	GAANNNNTTC	1 cut(s)	1325
MseI	TTAA	6 cut(s)	1121, 1200, 1257, 1275, 1398, 1703
MspI	CCGG	2 cut(s)	12, 1551
MspR9I	CCNGG	1 cut(s)	1127
MvaI	CCWGG	1 cut(s)	1127
MwoI	GCNNNNNNNGC	5 cut(s)	70, 142, 725, 806, 1490
NdeII	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
NheI	GCTAGC	1 cut(s)	1493
NlaIII	CATG	7 cut(s)	206, 462, 719, 823, 1040, 1264, 1362
NlaIV	GGNNCC	2 cut(s)	1253, 1649
NmeAIII	GCCGAG	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	717
NspI	RCATGY	1 cut(s)	719
PaeI	GCATGC	1 cut(s)	719
PceI	AGGCCT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	1325
PfeI	GAWTC	4 cut(s)	220, 521, 545, 1326
Pfl23II	CGTACG	1 cut(s)	6
PkrI	GCNGC	9 cut(s)	135, 495, 972, 1145, 1282, 1480, 1483, 1600, 1608
PleI	GAGTC	3 cut(s)	53, 879, 943
PpsI	GAGTC	3 cut(s)	53, 879, 943
PshBI	ATTAAT	1 cut(s)	1200
Psp6I	CCWGG	1 cut(s)	1125
PspGI	CCWGG	1 cut(s)	1125
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	1253, 1649
PstI	CTGCAG	2 cut(s)	802, 1588
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	1647
RsaI	GTAC	4 cut(s)	8, 664, 999, 1287
RsaNI	GTAC	4 cut(s)	7, 663, 998, 1286
SaqAI	TTAA	6 cut(s)	1121, 1200, 1257, 1275, 1398, 1703
SatI	GCNGC	9 cut(s)	134, 494, 971, 1144, 1281, 1479, 1482, 1599, 1607
Sau3AI	GATC	8 cut(s)	199, 676, 958, 1048, 1390, 1414, 1647, 1693
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	3 cut(s)	54, 880, 944
ScrFI	CCNGG	1 cut(s)	1127
SduI	GDGCHC	2 cut(s)	1457, 1546
SfaNI	GCATC	2 cut(s)	661, 702
SfcI	CTRYAG	3 cut(s)	666, 798, 1584
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SphI	GCATGC	1 cut(s)	719
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	4 cut(s)	350, 493, 1144, 1601
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	2 cut(s)	941, 1494
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	1125
StyI	CCWWGG	1 cut(s)	1631
TaaI	ACNGT	5 cut(s)	313, 901, 1290, 1343, 1488
TaiI	ACGT	1 cut(s)	363
TatI	WGTACW	3 cut(s)	662, 997, 1285
TauI	GCSGC	2 cut(s)	496, 1146
TfiI	GAWTC	4 cut(s)	220, 521, 545, 1326
Tru1I	TTAA	6 cut(s)	1121, 1200, 1257, 1275, 1398, 1703
Tru9I	TTAA	6 cut(s)	1121, 1200, 1257, 1275, 1398, 1703
TscAI	CASTG	4 cut(s)	884, 1336, 1426, 1491
TseI	GCWGC	7 cut(s)	133, 970, 1280, 1478, 1481, 1598, 1606
TspGWI	ACGGA	3 cut(s)	1061, 1166, 1632
TspRI	CASTG	4 cut(s)	884, 1336, 1426, 1491
VspI	ATTAAT	1 cut(s)	1200
XapI	RAATTY	6 cut(s)	139, 470, 905, 950, 1676, 1720
XceI	RCATGY	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	1241
XmnI	GAANNNNTTC	1 cut(s)	1325
XspI	CTAG	2 cut(s)	941, 1494
ZrmI	AGTACT	1 cut(s)	664
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.