Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401309.1

Orthogroup ID

OG0007292

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1216

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401309.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 619 bp

atgcaggcatctaaagaaatactaaagaatatctcacacaaagctgaaaataaaaccaaaaatcagattacggtgcagaacaatgaaggaggaaaagggtttccagccccgcctcaggacgttccacaatccccttctctaaaaaataactctaaagttgatgaaaaagttgaaatgattgattatgccaaaggtggtattgatgaaagtggaaagtcatgtgaattgaaatttgggagttactgcctttggcggcaagaacataaagaagaaatgaaggattctatggtgaagagattgaaggattcactatttgtggcaagagcatattttcctaccattgcaaaacttccatctcaacgcaagttctctggtgaaatgaaacaaaacattcaagagctggagaaagttcttagtgaaagtactacagatgctgatcttccatcacagattgggaagaagcttgagaggatgcatgctgtgatagctaaagccaaaaccttccctgtggaatgtcataatgttgacaagaagctgagacaaatatttgatatgactgcagatgaagctaatttccacatgaaacaaagtgtcttcctctaccaacttgcagtccaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

206

Amino Acids

23.41

Weight (kDa)

8.96

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38650 AT2G38650 AT2G38650
fragaria_vesca	FvH4_6g09030 FvH4_6g09030
malus_domestica	MD04G1181600.v1.1 MD04G1182600.v1.1 MD12G1196400.v1.1
prunus_persica	Prupe.6G301000_v2.0.a1 Prupe.6G301000_v2.0.a1
pyrus_communis	pycom04g16050 pycom12g18260
rosa_chinensis	RchiOBHm_Chr3g0459281
rosa_laevigata	RLG00000025097
rosa_multiflora	Rmu_co8275713.1_g000001 Rmu_co8401309.1_g000001 Rmu_sc0009302.1_g000001 Rmu_sc0012999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420340
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092800 Rh3BG095900 Rh3CG096900 Rh3DG096500
rosa_wichuraiana	Rw3G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 253
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	173, 229, 301, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	6 cut(s)	44, 400, 463, 488, 535, 569
AluI	AGCT	6 cut(s)	44, 400, 463, 488, 535, 569
Alw26I	GTCTC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	301, 386
AxyI	CCTNAGG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	586
BccI	CCATC	2 cut(s)	361, 451
BcoDI	GTCTC	1 cut(s)	532
BfmI	CTRYAG	2 cut(s)	426, 558
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmcAI	AGTACT	1 cut(s)	424
BmsI	GCATC	3 cut(s)	17, 421, 462
BpiI	GAAGAC	1 cut(s)	586
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	435
BseGI	GGATG	1 cut(s)	477
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	128, 527
BsgI	GTGCAG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	2 cut(s)	110, 253
BspCNI	CTCAG	2 cut(s)	127, 528
BspMAI	CTGCAG	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	339
BssMI	GATC	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	6, 477
BstDEI	CTNAG	3 cut(s)	114, 413, 536
BstF5I	GGATG	1 cut(s)	477
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 566
BstNSI	RCATGY	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	426, 558
BstV2I	GAAGAC	1 cut(s)	586
Bsu36I	CCTNAGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	6, 477
CaiI	CAGNNNCTG	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	3 cut(s)	219, 476, 580
CviJI	RGCY	8 cut(s)	44, 107, 400, 463, 488, 494, 535, 569
CviKI_1	RGCY	8 cut(s)	44, 107, 400, 463, 488, 494, 535, 569
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	3 cut(s)	114, 413, 536
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	477
FaeI	CATG	3 cut(s)	222, 479, 583
FaiI	YATR	9 cut(s)	186, 220, 264, 287, 328, 477, 519, 554, 581
FatI	CATG	3 cut(s)	218, 475, 579
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	1 cut(s)	484
Fsp4HI	GCNGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	422
Hin1II	CATG	3 cut(s)	222, 479, 583
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	281, 305
HphI	GGTGA	2 cut(s)	301, 386
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	116, 395, 616
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	5 cut(s)	80, 144, 271, 295, 511
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	6 cut(s)	4, 76, 344, 475, 560, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 566
HpyF3I	CTNAG	3 cut(s)	114, 413, 536
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	222, 479, 583
Kzo9I	GATC	1 cut(s)	436
LpnPI	CCDG	5 cut(s)	101, 117, 357, 386, 519
LweI	GCATC	3 cut(s)	17, 421, 462
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	5 cut(s)	281, 304, 431, 469, 586
MluCI	AATT	3 cut(s)	224, 230, 571
MnlI	CCTC	4 cut(s)	83, 123, 462, 608
Mph1103I	ATGCAT	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	485, 566
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	222, 479, 583
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	1 cut(s)	479
PaeI	GCATGC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	281, 305
PkrI	GCNGC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	436
ScaI	AGTACT	1 cut(s)	424
SetI	ASST	9 cut(s)	46, 123, 196, 402, 465, 490, 503, 537, 571
SfaNI	GCATC	3 cut(s)	17, 421, 462
SfcI	CTRYAG	2 cut(s)	426, 558
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	3 cut(s)	224, 230, 571
SsiI	CCGC	2 cut(s)	110, 253
SspI	AATATT	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	123
TasI	AATT	3 cut(s)	224, 230, 571
TatI	WGTACW	1 cut(s)	422
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	281, 305
TspDTI	ATGAA	7 cut(s)	99, 177, 219, 290, 395, 579, 596
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	479
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.