Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009302.1

Orthogroup ID

OG0007292

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 16149

Gene Structure 16149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009302.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 712 bp

atcgcgtcctctcttccccctcgtctccttcgcctcccctcttgtcctcttcgccaccaccaccgccttcattgcctccaccccttcatacctactcccgccgtcattcactgccccctctgcccgttggcgacgccgatatggttcggagcagccgaattcgcctacgcatactacgccaatcatcatcaataccaattctaatcaagccgaggaggatcatgtaaagcgtgtagagaatcttgtgaaacagcttgcaccaccaatttttcaggaaatactaaagaatatctcacacaaagctgaaaataaaaccaaaaatcagattacggtgcagaacaatgaaggaggaaaagggtttccagccccgcctcaggacgttccacaatccccttctctaaaaaataactctaaagttgatgaaaaagttgaaatgattgattatgccaaaggtggtattgatgaaagtggaaagtcatgtgaattgaaatttgggagttactgcctttggcggcaagaacataaagaagaaatgaaggattctatggtgaagagattgaaggattcactatttgtggcaagagcatattttcctaccattgcaaaacttccatctcaacgcaagttctctggtgaaatgaaacaaaacattcaagagctggagaaagttcttagtgaaagtactacagatgctgatcttccatcacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

8.94

Isoelectric Point (pI)

69.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38650 AT2G38650 AT2G38650
fragaria_vesca	FvH4_6g09030 FvH4_6g09030
malus_domestica	MD04G1181600.v1.1 MD04G1182600.v1.1 MD12G1196400.v1.1
prunus_persica	Prupe.6G301000_v2.0.a1 Prupe.6G301000_v2.0.a1
pyrus_communis	pycom04g16050 pycom12g18260
rosa_chinensis	RchiOBHm_Chr3g0459281
rosa_laevigata	RLG00000025097
rosa_multiflora	Rmu_co8275713.1_g000001 Rmu_co8401309.1_g000001 Rmu_sc0009302.1_g000001 Rmu_sc0012999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420340
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092800 Rh3BG095900 Rh3CG096900 Rh3DG096500
rosa_wichuraiana	Rw3G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	5
AciI	CCGC	4 cut(s)	64, 99, 369, 512
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	158, 489
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	432, 488, 560, 654
AjuI	GAANNNNNNNTTGG	2 cut(s)	475, 507
AluBI	AGCT	3 cut(s)	254, 303, 659
AluI	AGCT	3 cut(s)	254, 303, 659
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	693
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	158, 489
AsuHPI	GGTGA	2 cut(s)	560, 645
AxyI	CCTNAGG	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	620, 710
BceAI	ACGGC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	685
BisI	GCNGC	2 cut(s)	153, 513
BlsI	GCNGC	2 cut(s)	154, 514
BmcAI	AGTACT	1 cut(s)	683
BmsI	GCATC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	681
BsaBI	GATNNNNATC	1 cut(s)	694
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	373
Bse3DI	GCAATG	2 cut(s)	70, 598
Bse8I	GATNNNNATC	1 cut(s)	694
BseDI	CCNNGG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	2 cut(s)	70, 598
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	218, 695
BspACI	CCGC	4 cut(s)	64, 99, 369, 512
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	5
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	70, 598
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	218, 695
BssNI	GRCGYC	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	332, 709
Bst6I	CTCTTC	3 cut(s)	18, 54, 546
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	373, 672
BstFNI	CGCG	1 cut(s)	5
BstKTI	GATC	2 cut(s)	221, 698
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	218, 695
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 120, 161, 176
BstSFI	CTRYAG	1 cut(s)	685
BstUI	CGCG	1 cut(s)	5
BstV1I	GCAGC	1 cut(s)	164
Bsu36I	CCTNAGG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	693
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	2 cut(s)	222, 478
CviJI	RGCY	6 cut(s)	155, 210, 254, 303, 366, 659
CviKI_1	RGCY	6 cut(s)	155, 210, 254, 303, 366, 659
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	2 cut(s)	373, 672
DpnI	GATC	2 cut(s)	220, 697
DpnII	GATC	2 cut(s)	218, 695
Eam1104I	CTCTTC	3 cut(s)	18, 54, 546
EarI	CTCTTC	3 cut(s)	18, 54, 546
Eco81I	CCTNAGG	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	158
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	2 cut(s)	225, 481
FaiI	YATR	9 cut(s)	89, 142, 172, 223, 445, 479, 523, 546, 587
FatI	CATG	2 cut(s)	221, 477
FauI	CCCGC	2 cut(s)	106, 376
Fnu4HI	GCNGC	2 cut(s)	153, 513
Fsp4HI	GCNGC	2 cut(s)	153, 513
GluI	GCNGC	2 cut(s)	153, 513
GsuI	CTGGAG	1 cut(s)	681
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	225, 481
HinfI	GANTC	3 cut(s)	239, 540, 564
HphI	GGTGA	2 cut(s)	560, 645
Hpy188I	TCNGA	2 cut(s)	149, 325
Hpy188III	TCNNGA	3 cut(s)	273, 375, 654
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	7 cut(s)	38, 77, 94, 339, 403, 530, 554
HpyCH4III	ACNGT	2 cut(s)	332, 709
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	258, 335, 603
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 120, 161, 176
HpyF3I	CTNAG	2 cut(s)	373, 672
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	225, 481
Kzo9I	GATC	2 cut(s)	218, 695
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	5 cut(s)	258, 360, 376, 616, 645
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	680
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	2 cut(s)	220, 697
MboI	GATC	2 cut(s)	218, 695
MboII	GAAGA	5 cut(s)	5, 41, 540, 563, 690
MluCI	AATT	5 cut(s)	158, 197, 265, 483, 489
MvnI	CGCG	1 cut(s)	5
MwoI	GCNNNNNNNGC	4 cut(s)	72, 120, 161, 176
NdeII	GATC	2 cut(s)	218, 695
NlaIII	CATG	2 cut(s)	225, 481
NmeAIII	GCCGAG	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	239, 540, 564
PkrI	GCNGC	2 cut(s)	154, 514
PstNI	CAGNNNCTG	1 cut(s)	693
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SatI	GCNGC	2 cut(s)	153, 513
Sau3AI	GATC	2 cut(s)	218, 695
ScaI	AGTACT	1 cut(s)	683
SetI	ASST	6 cut(s)	94, 256, 305, 382, 455, 661
SfaNI	GCATC	1 cut(s)	680
SfcI	CTRYAG	1 cut(s)	685
Sse9I	AATT	5 cut(s)	158, 197, 265, 483, 489
SsiI	CCGC	4 cut(s)	64, 99, 369, 512
TaaI	ACNGT	2 cut(s)	332, 709
TaiI	ACGT	1 cut(s)	382
TasI	AATT	5 cut(s)	158, 197, 265, 483, 489
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	3 cut(s)	239, 540, 564
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	7 cut(s)	59, 76, 358, 436, 478, 549, 654
TspRI	CASTG	1 cut(s)	116
XapI	RAATTY	2 cut(s)	158, 489
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.