MD04G1182600.v1.1

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0007292
Physical Location & Seq
Reverse (-)
27387857 .. 27390457
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1182600.v1.1.491

Sequence Viewer

Length: 354 bp
ATGCCTTCTAAGAAATCTAAAGCTTGTGACTCAGCTCAAGTCATTGATTATGCGAAAGGTGGTGTGGATCAAAGTGGAAAATCATGCGAGTTGAAGTTTGGGAGCTACTGCCTTTGGCACGAACAACATAGAGAAGACATGAAGGATATTATGGTGAAGAGATTGAAGGATCAACTATTTGTGGCTCGAGCATATTTTCCTAGTATCGGGAAACTTCCATCACAGGACAAGTTGTCTCGTGAGTTGAGACAAAATATTCAGGAGGTGGAGCGTGTTCTTAGTGAAAGTACTACAGATGTTGATCTTCCCCCAGAGTATGCGCGTTTGGGCACGAACACCATCTCTTACATATGA

Protein Analysis

118

Amino Acids

13.34

Weight (kDa)

7.69

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 48 - 105 5.5e-21 Galacturonosyltransferase domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AclWI GGATC 2 cut(s) 75, 177
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 94, 166
AhdI GACNNNNNGTC 1 cut(s) 232
AluBI AGCT 3 cut(s) 23, 35, 105
AluI AGCT 3 cut(s) 23, 35, 105
Alw26I GTCTC 2 cut(s) 240, 241
AlwI GGATC 2 cut(s) 75, 177
Ama87I CYCGRG 1 cut(s) 186
AspLEI GCGC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 332
BauI CACGAG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 141
BccI CCATC 2 cut(s) 226, 347
BcoDI GTCTC 2 cut(s) 240, 241
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 289
BmeRI GACNNNNNGTC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 240, 241
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 3 cut(s) 67, 169, 301
BspCNI CTCAG 1 cut(s) 44
BspFNI CGCG 1 cut(s) 322
BspPI GGATC 2 cut(s) 75, 177
BssMI GATC 3 cut(s) 67, 169, 301
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 9, 31, 278
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 70, 172, 304
BstMAI GTCTC 2 cut(s) 240, 241
BstMBI GATC 3 cut(s) 67, 169, 301
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 332
BstUI CGCG 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 141
CfoI GCGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 288
CviAII CATG 2 cut(s) 84, 139
CviJI RGCY 4 cut(s) 23, 35, 105, 185
CviKI_1 RGCY 4 cut(s) 23, 35, 105, 185
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 3 cut(s) 9, 31, 278
DpnI GATC 3 cut(s) 69, 171, 303
DpnII GATC 3 cut(s) 67, 169, 301
DriI GACNNNNNGTC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 152
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 186
FaeI CATG 2 cut(s) 87, 142
FaiI YATR 9 cut(s) 51, 85, 129, 140, 152, 193, 318, 350, 352
FatI CATG 2 cut(s) 83, 138
FauNDI CATATG 1 cut(s) 350
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 87, 142
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 1 cut(s) 29
HphI GGTGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 208, 239, 260
HpyAV CCTTC 3 cut(s) 15, 136, 160
HpyF3I CTNAG 3 cut(s) 9, 31, 278
Hsp92II CATG 2 cut(s) 87, 142
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 3 cut(s) 67, 169, 301
LmnI GCTCC 2 cut(s) 102, 268
LpnPI CCDG 3 cut(s) 209, 245, 324
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 26
MalI GATC 3 cut(s) 69, 171, 303
MboI GATC 3 cut(s) 67, 169, 301
MboII GAAGA 3 cut(s) 146, 169, 296
MhlI GDGCHC 1 cut(s) 332
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 1 cut(s) 256
MvnI CGCG 1 cut(s) 322
NdeI CATATG 1 cut(s) 350
NdeII GATC 3 cut(s) 67, 169, 301
NlaIII CATG 2 cut(s) 87, 142
NmuCI GTSAC 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 186
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PspXI VCTCGAGB 1 cut(s) 186
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
Sau3AI GATC 3 cut(s) 67, 169, 301
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 332
SetI ASST 5 cut(s) 25, 37, 61, 107, 267
SfcI CTRYAG 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 36, 186
SmoI CTYRAG 2 cut(s) 36, 186
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 201
TaqI TCGA 1 cut(s) 187
TatI WGTACW 1 cut(s) 287
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 186
XspI CTAG 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.