Rroxscaffold_6G00420340

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
41616135 .. 41621381
5247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420340.1

Sequence Viewer

Length: 1656 bp
ATGGCGTACGCCGGAAAGAAGAGATGGAAAGGTTTGGTGGTAGGAGTCTTAGGCCTTGTTTTGCTTTCTATGCTCGTTCCTCTTCTCTTCCTTCTCGGTATTCACAATGGCTTTCAAGGATATGGTTCGGAGCAGCCGAATTCGCCTACACATACTACACCAATCATCATCAATACCGATTCTAATCAAGCCGAGGAGGATCATGTAAAGCGTGTAGAGAATCTTGTGAAACAGCTTGCACCACCAATTTTTCAGAATTCTAAAGTTAATGGAAAAGTTGAAATGATTGATTATGCCAAAGGTGGTATTGATGAAAGTGGAAAGTCATGTGAATTGAAATTTGGGAGTTACTGCCGTTGGCGGCAAGAACATAAAGAAGAAATGAAGGATTCTATGGTGAAGAGATTGAAGGATTCACTATTTGTGGCAAGAGCATATTTTCCTACCATTGCAAAACTTCCATCTCAACGCAAGTTCTCTGGTGAAATGAAACAAAACATTCAAGAGCTGGAGAAAGTTCTTAGTGAAAGTACTACAGATGCTGATCTTCCATCACAGATTGGGAAGAAGCTTGAGAGGATGCATGCTGTGATAGCTAAAGCCAAAACCTTCCCTGTGGAATGTCATAATGTTGATAAGAAGCTGAGACAAATATTTGATATGACTGCAGATGAAGCTAATTTCCACATGAAACAAAGTGTCTTCCTCTACCAACTTGCAGTCCAGACTATGCCAAAGAGTCTCCACTGCTTGTCTATGAGACTGACTGTGGAATTTTTCAGAAATCCCGTTTATGATAAGGAGTCTCTAGCGAGCAAATACAATGATCCTGCATTGCAGCACTATGTCATACTCTCCACCAATGTACTTGCATTATCAGTTGTAATCAACTCAACTGTAATGCATGCAAAAGAAAGTGGGAAACTGGTTTTTCATGTGCTGACGGATCAACAGAATTACTTTGCGATGAAACTATGGTTCTTTAGAAATACTTATAAAGAAGCCATAGTTCAGGTTTTAAACCTGGAGGAGCTTGACAGCCGCAAATTATACCTGTCGTTACCTTTGGAGTTCCGTGTTTCCTTTGGCATTGGTGCCGAAGCTAGAACGGAATACTTATCTATTTTTTCTCATTCACACTATCTTCTTCCTGAGATATTCCCGAATTTGGAGAAAGTTGTGGTTTTGGATGAAGATGTTGTTGTACAGCAGGACTTGTCTGCACTTTGGAGCCTTAACATGGAAGGAAAAGTTAATGCTGCTGTACAGTTATGCTCCGTGAAGTTGAGTAATCTTATGAAGAGATACGTTGGTGAGAACAGTTTTGATAAAACCTCATGTGCTTGGATGTCTGGATTGAATGTCATTGATCTGGTTAAGTGGAGAGAACTTGATCTCACTGAAACTTACCGAAGGTTTGTAAATGAGGTGAGCACGCAAAAGGAACTAAATGAAGCTGCTGCACTGTATGCTAGCTTGCTAACCTTCAAGGACTTGATTTATCCTCTTGATGGTGTGTGGGCTCTCTCCGGACTGGAGCAGAAGGATGGAGCTCCCAGATGGCAGCTTAAGCTTGGAGTCACCGGATTGGGGATGGAAGGTGATTTGATGGACAACCAAGTCCCAGGGAGTTATTTGAAGAAAATTTTTGCTTAG

Protein Analysis

551

Amino Acids

62.56

Weight (kDa)

7.62

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 129 - 204 3.5e-24 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 250 - 512 2.9e-33 Glycosyl transferase family 8
Glyco_transf_24 PF18404 374 - 481 1.5e-07 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
AasI GACNNNNNNGTC 1 cut(s) 1619
AccB1I GGYRCC 1 cut(s) 1094
AccIII TCCGGA 1 cut(s) 1529
AciI CCGC 2 cut(s) 361, 1042
AclWI GGATC 3 cut(s) 207, 821, 954
AcsI RAATTY 6 cut(s) 139, 256, 338, 773, 1165, 1644
AfaI GTAC 5 cut(s) 8, 532, 867, 1206, 1266
AfiI CCNNNNNNNGG 4 cut(s) 1168, 1240, 1511, 1590
AflII CTTAAG 1 cut(s) 1568
AgsI TTSAA 8 cut(s) 116, 281, 337, 409, 503, 1360, 1489, 1639
AjnI CCWGG 2 cut(s) 1023, 1624
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
Alw21I GWGCWC 2 cut(s) 1436, 1555
Alw26I GTCTC 4 cut(s) 640, 746, 754, 810
AlwI GGATC 3 cut(s) 207, 821, 954
AlwNI CAGNNNCTG 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 1529
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 6 cut(s) 133, 838, 1259, 1457, 1460, 1564
ApoI RAATTY 6 cut(s) 139, 256, 338, 773, 1165, 1644
AsuHPI GGTGA 6 cut(s) 409, 494, 1325, 1441, 1573, 1613
AsuNHI GCTAGC 1 cut(s) 1472
BaeI ACNNNNGTAYC 2 cut(s) 1297, 1330
BanI GGYRCC 1 cut(s) 1094
BanII GRGCYC 2 cut(s) 1525, 1555
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 2 cut(s) 1436, 1555
BbvI GCAGC 6 cut(s) 145, 850, 1246, 1444, 1447, 1576
BccI CCATC 8 cut(s) 18, 469, 559, 1505, 1541, 1554, 1588, 1603
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 2 cut(s) 1025, 1626
BcoDI GTCTC 4 cut(s) 640, 746, 754, 810
BfaI CTAG 3 cut(s) 809, 1104, 1473
BfmI CTRYAG 2 cut(s) 534, 666
BfrI CTTAAG 1 cut(s) 1568
BisI GCNGC 8 cut(s) 134, 362, 839, 1042, 1260, 1458, 1461, 1565
BlsI GCNGC 8 cut(s) 135, 363, 840, 1043, 1261, 1459, 1462, 1566
BmcAI AGTACT 1 cut(s) 532
Bme1390I CCNGG 2 cut(s) 1025, 1626
BmiI GGNNCC 2 cut(s) 1096, 1232
BmrFI CCNGG 2 cut(s) 1025, 1626
BmsI GCATC 2 cut(s) 529, 570
BmtI GCTAGC 1 cut(s) 1476
BpiI GAAGAC 1 cut(s) 694
BpmI CTGGAG 3 cut(s) 530, 1046, 1556
BpuEI CTTGAG 1 cut(s) 593
BsaBI GATNNNNATC 2 cut(s) 183, 543
BsaJI CCNNGG 3 cut(s) 192, 1624, 1625
BsaWI WCCGGW 2 cut(s) 1529, 1583
Bsc4I CCNNNNNNNGG 4 cut(s) 1168, 1240, 1511, 1590
Bse1I ACTGG 2 cut(s) 930, 1539
Bse3DI GCAATG 2 cut(s) 447, 833
Bse8I GATNNNNATC 2 cut(s) 183, 543
BseAI TCCGGA 1 cut(s) 1529
BseBI CCWGG 2 cut(s) 1025, 1626
BseDI CCNNGG 3 cut(s) 192, 1624, 1625
BseGI GGATG 5 cut(s) 585, 1195, 1353, 1552, 1599
BseJI GATNNNNATC 2 cut(s) 183, 543
BseLI CCNNNNNNNGG 4 cut(s) 1168, 1240, 1511, 1590
BseMI GCAATG 2 cut(s) 447, 833
BseMII CTCAG 2 cut(s) 635, 1143
BseNI ACTGG 2 cut(s) 930, 1539
BseRI GAGGAG 2 cut(s) 209, 1043
BseXI GCAGC 6 cut(s) 145, 850, 1246, 1444, 1447, 1576
BsgI GTGCAG 2 cut(s) 1206, 1446
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 1094
BsiHKAI GWGCWC 2 cut(s) 1436, 1555
BsiSI CCGG 3 cut(s) 12, 1530, 1584
BsiWI CGTACG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 1607
BslI CCNNNNNNNGG 4 cut(s) 1168, 1240, 1511, 1590
BsmAI GTCTC 4 cut(s) 640, 746, 754, 810
BsmFI GGGAC 1 cut(s) 1607
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 3 cut(s) 1436, 1525, 1555
Bsp13I TCCGGA 1 cut(s) 1529
Bsp1407I TGTACA 2 cut(s) 1204, 1264
Bsp143I GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
BspACI CCGC 2 cut(s) 361, 1042
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 2 cut(s) 636, 1144
BspEI TCCGGA 1 cut(s) 1529
BspLI GGNNCC 2 cut(s) 1096, 1232
BspMAI CTGCAG 1 cut(s) 670
BspOI GCTAGC 1 cut(s) 1476
BspPI GGATC 3 cut(s) 207, 821, 954
BspT107I GGYRCC 1 cut(s) 1094
BspTI CTTAAG 1 cut(s) 1568
BsrDI GCAATG 2 cut(s) 447, 833
BsrGI TGTACA 2 cut(s) 1204, 1264
BsrI ACTGG 2 cut(s) 930, 1539
BssECI CCNNGG 3 cut(s) 192, 1624, 1625
BssMI GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
Bst2UI CCWGG 2 cut(s) 1025, 1626
Bst4CI ACNGT 5 cut(s) 769, 898, 1269, 1322, 1467
Bst6I CTCTTC 5 cut(s) 14, 87, 92, 395, 1295
BstAFI CTTAAG 1 cut(s) 1568
BstAPI GCANNNNNTGC 1 cut(s) 1469
BstAUI TGTACA 2 cut(s) 1204, 1264
BstC8I GCNNGC 7 cut(s) 237, 585, 814, 906, 1436, 1474, 1478
BstDEI CTNAG 5 cut(s) 49, 521, 644, 1152, 1653
BstF5I GGATG 5 cut(s) 585, 1195, 1353, 1552, 1599
BstKTI GATC 6 cut(s) 202, 547, 829, 949, 1372, 1396
BstMAI GTCTC 4 cut(s) 640, 746, 754, 810
BstMBI GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
BstMWI GCNNNNNNNGC 6 cut(s) 70, 142, 593, 674, 1469, 1570
BstNI CCWGG 2 cut(s) 1025, 1626
BstNSI RCATGY 2 cut(s) 587, 908
BstSCI CCNGG 2 cut(s) 1023, 1624
BstSFI CTRYAG 2 cut(s) 534, 666
BstV1I GCAGC 6 cut(s) 145, 850, 1246, 1444, 1447, 1576
BstV2I GAAGAC 1 cut(s) 694
BsuRI GGCC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 980
BtsCI GGATG 5 cut(s) 585, 1195, 1353, 1552, 1599
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 745, 1398, 1463
Cac8I GCNNGC 7 cut(s) 237, 585, 814, 906, 1436, 1474, 1478
CaiI CAGNNNCTG 1 cut(s) 542
Csp6I GTAC 5 cut(s) 7, 531, 866, 1205, 1265
CviAII CATG 8 cut(s) 203, 327, 584, 688, 905, 935, 1240, 1338
CviQI GTAC 5 cut(s) 7, 531, 866, 1205, 1265
DdeI CTNAG 5 cut(s) 49, 521, 644, 1152, 1653
DpnI GATC 6 cut(s) 201, 546, 828, 948, 1371, 1395
DpnII GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
DraI TTTAAA 1 cut(s) 1020
DrdI GACNNNNNNGTC 1 cut(s) 1619
DseDI GACNNNNNNGTC 1 cut(s) 1619
Eam1104I CTCTTC 5 cut(s) 14, 87, 92, 395, 1295
EarI CTCTTC 5 cut(s) 14, 87, 92, 395, 1295
Ecl136II GAGCTC 1 cut(s) 1553
Eco147I AGGCCT 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 1525, 1555
Eco53kI GAGCTC 1 cut(s) 1553
EcoICRI GAGCTC 1 cut(s) 1553
EcoRI GAATTC 2 cut(s) 139, 256
EcoRII CCWGG 2 cut(s) 1023, 1624
EcoT22I ATGCAT 2 cut(s) 585, 906
EcoT38I GRGCYC 2 cut(s) 1525, 1555
FaeI CATG 8 cut(s) 206, 330, 587, 691, 908, 938, 1243, 1341
FaqI GGGAC 1 cut(s) 1607
FatI CATG 8 cut(s) 202, 326, 583, 687, 904, 934, 1239, 1337
Fnu4HI GCNGC 8 cut(s) 134, 362, 839, 1042, 1260, 1458, 1461, 1565
FokI GGATG 5 cut(s) 592, 1202, 1360, 1559, 1606
FriOI GRGCYC 2 cut(s) 1525, 1555
Fsp4HI GCNGC 8 cut(s) 134, 362, 839, 1042, 1260, 1458, 1461, 1565
FspBI CTAG 3 cut(s) 809, 1104, 1473
GluI GCNGC 8 cut(s) 134, 362, 839, 1042, 1260, 1458, 1461, 1565
GsuI CTGGAG 3 cut(s) 530, 1046, 1556
HaeIII GGCC 1 cut(s) 54
HapII CCGG 3 cut(s) 12, 1530, 1584
Hin1II CATG 8 cut(s) 206, 330, 587, 691, 908, 938, 1243, 1341
HindIII AAGCTT 2 cut(s) 569, 1571
HinfI GANTC 8 cut(s) 45, 179, 220, 389, 413, 739, 803, 1578
HpaII CCGG 3 cut(s) 12, 1530, 1584
HphI GGTGA 6 cut(s) 409, 494, 1325, 1441, 1573, 1613
Hpy188I TCNGA 3 cut(s) 130, 255, 782
Hpy188III TCNNGA 7 cut(s) 503, 724, 1151, 1162, 1353, 1508, 1530
HpyAV CCTTC 9 cut(s) 101, 379, 403, 619, 1238, 1407, 1495, 1537, 1592
HpyCH4III ACNGT 5 cut(s) 769, 898, 1269, 1322, 1467
HpyCH4IV ACGT 1 cut(s) 1308
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 142, 593, 674, 1469, 1570
HpyF3I CTNAG 5 cut(s) 49, 521, 644, 1152, 1653
HpySE526I ACGT 1 cut(s) 1308
Hsp92II CATG 8 cut(s) 206, 330, 587, 691, 908, 938, 1243, 1341
Kpn2I TCCGGA 1 cut(s) 1529
Kzo9I GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
LmnI GCTCC 7 cut(s) 130, 1030, 1230, 1280, 1537, 1550, 1558
Lsp1109I GCAGC 6 cut(s) 145, 850, 1246, 1444, 1447, 1576
LweI GCATC 2 cut(s) 529, 570
MaeI CTAG 3 cut(s) 809, 1104, 1473
MaeII ACGT 1 cut(s) 1308
MaeIII GTNAC 3 cut(s) 347, 1059, 1579
MalI GATC 6 cut(s) 201, 546, 828, 948, 1371, 1395
MboI GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
MhlI GDGCHC 3 cut(s) 1436, 1525, 1555
MlyI GAGTC 4 cut(s) 54, 748, 812, 1587
MnlI CCTC 9 cut(s) 90, 187, 190, 570, 716, 1021, 1345, 1420, 1515
Mph1103I ATGCAT 2 cut(s) 585, 906
MroI TCCGGA 1 cut(s) 1529
MseI TTAA 6 cut(s) 267, 1019, 1236, 1254, 1377, 1569
MspCI CTTAAG 1 cut(s) 1568
MspI CCGG 3 cut(s) 12, 1530, 1584
MspR9I CCNGG 2 cut(s) 1025, 1626
MvaI CCWGG 2 cut(s) 1025, 1626
MwoI GCNNNNNNNGC 6 cut(s) 70, 142, 593, 674, 1469, 1570
NdeII GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
NheI GCTAGC 1 cut(s) 1472
NlaIII CATG 8 cut(s) 206, 330, 587, 691, 908, 938, 1243, 1341
NlaIV GGNNCC 2 cut(s) 1096, 1232
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 1579
NsiI ATGCAT 2 cut(s) 585, 906
NspI RCATGY 2 cut(s) 587, 908
PaeI GCATGC 2 cut(s) 587, 908
PasI CCCWGGG 1 cut(s) 1625
PceI AGGCCT 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 4 cut(s) 179, 220, 389, 413
Pfl23II CGTACG 1 cut(s) 6
PkrI GCNGC 8 cut(s) 135, 363, 840, 1043, 1261, 1459, 1462, 1566
PleI GAGTC 4 cut(s) 53, 747, 811, 1586
PpsI GAGTC 4 cut(s) 53, 747, 811, 1586
PsiI TTATAA 1 cut(s) 996
Psp124BI GAGCTC 1 cut(s) 1555
Psp6I CCWGG 2 cut(s) 1023, 1624
PspGI CCWGG 2 cut(s) 1023, 1624
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 1096, 1232
PstI CTGCAG 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 542
RsaI GTAC 5 cut(s) 8, 532, 867, 1206, 1266
RsaNI GTAC 5 cut(s) 7, 531, 866, 1205, 1265
SacI GAGCTC 1 cut(s) 1555
SaqAI TTAA 6 cut(s) 267, 1019, 1236, 1254, 1377, 1569
SatI GCNGC 8 cut(s) 134, 362, 839, 1042, 1260, 1458, 1461, 1565
Sau3AI GATC 6 cut(s) 199, 544, 826, 946, 1369, 1393
ScaI AGTACT 1 cut(s) 532
SchI GAGTC 4 cut(s) 54, 748, 812, 1587
ScrFI CCNGG 2 cut(s) 1025, 1626
SduI GDGCHC 3 cut(s) 1436, 1525, 1555
SfaNI GCATC 2 cut(s) 529, 570
SfcI CTRYAG 2 cut(s) 534, 666
SmlI CTYRAG 2 cut(s) 572, 1568
SmoI CTYRAG 2 cut(s) 572, 1568
SphI GCATGC 2 cut(s) 587, 908
SseBI AGGCCT 1 cut(s) 54
SsiI CCGC 2 cut(s) 361, 1042
SspI AATATT 1 cut(s) 654
SspMI CTAG 3 cut(s) 809, 1104, 1473
SstI GAGCTC 1 cut(s) 1555
StuI AGGCCT 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 1023, 1624
TaaI ACNGT 5 cut(s) 769, 898, 1269, 1322, 1467
TaiI ACGT 1 cut(s) 1311
TatI WGTACW 4 cut(s) 530, 865, 1204, 1264
TauI GCSGC 2 cut(s) 364, 1044
TfiI GAWTC 4 cut(s) 179, 220, 389, 413
Tru1I TTAA 6 cut(s) 267, 1019, 1236, 1254, 1377, 1569
Tru9I TTAA 6 cut(s) 267, 1019, 1236, 1254, 1377, 1569
TscAI CASTG 3 cut(s) 752, 1405, 1470
TseFI GTSAC 1 cut(s) 1579
TseI GCWGC 6 cut(s) 133, 838, 1259, 1457, 1460, 1564
Tsp45I GTSAC 1 cut(s) 1579
TspGWI ACGGA 4 cut(s) 959, 1064, 1124, 1267
TspRI CASTG 3 cut(s) 752, 1405, 1470
Vha464I CTTAAG 1 cut(s) 1568
XapI RAATTY 6 cut(s) 139, 256, 338, 773, 1165, 1644
XceI RCATGY 2 cut(s) 587, 908
XspI CTAG 3 cut(s) 809, 1104, 1473
ZrmI AGTACT 1 cut(s) 532
Zsp2I ATGCAT 2 cut(s) 585, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.