Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007292

Physical Location & Seq

Genomic Coordinates Reverse (-)

18771458 .. 18775859

Gene Structure 4402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAAGGGCGGGGTTGCGGGCGGTAGTTATTCCGGCAAGCGGCGATGGAAGGGGTTGGTGATTGGAGTGTTGGGTCTGGTTTTTCTTTCCATGCTCGTTCCACTTCTCTTCCTTCTCGGCCTTCACAATGGCTTTCACCCTCCCGGCGGCTCTGGCGACGCCTTCCGCCCACTCCCTCGAAACAAAGGCAGCAACCCTCAAGCCCAGCCTCACAGGGATATACTAAAGAATATTTCACATAAAGCTGAAAATGAAACCAAAAATATCAGTGCTGTTCACAACAATGAACAAGCCAGTGTCGTTTACAACAATGAACAAGCCAGTGTCGTTCACAACAATGAACAAGCCAGTGTCGTTCACAACAATGAACAAGCCAGTGTCAACTCTAAAGCTGGTGACTCAGCTCAAATCATTGATTATGCGAAAGGTGGTGTGGATCAAAGTGGAAAATCATGCGAGTTGAAGTTTGGGAGCTACTGCCTTTGGCGTGAACAACATAGAGAAGACAGGAAGGATGCTATGGTGAAGAGATTGAAGGATCAACTATTTGTGGCTCGAGCATATTTTCCTAGTATCGCGAAACTTCCATCACAAGACAAGTTGTCTCGTGAGTTGAGACAAAATATTCAGGAGGTGGAGCGTGTTCTTAGTGAAAGTACTAAAGATGTCGATCTTCCCCCACAGATTGAGAAGAAGCTACAGAGGTTGCAAGCTTCAATAGCCAAAGCCAAAACATTCCGCGTGGATTGTAATAATGTTGACAAGAAACTGAGACAAATATATGATATGACTGAGGATGAAGCGAACTTCCACATGAAACAAAGTGTCTTTCTCTACCAACTTGCTGTCCAGACTATGCCAAAGAGCCACCATTGCCTGTCAATGAGACTGACTGTGGAATATTTCAGATCTCCTCTTGACAATACCGACTCTTCTCTGGCTGACAAATACGTTAATCATGCATTCCAGCACTATGTCATATTCTCCACTAACGTACTTGCATCCTCAGTTGTAATCAACTCAACTGTAATGCATGCAAAAGATAGTGGGAAACTGGTTTTTCACGTGCTCACGGATCAAGAGAATTACTTTGCAATGAAACTCTGGTTTTTCAGAAATACTTACAAGGAAGCGACGGTTGAGGTGTTAAACATTGAGCAGCTTAATCTAGACAACCGCAAACTATATCTTTCACTGCCTTTGGAGTTCCGTGTTTCCTATAGCATTGATGCCCAATCCAGAACGGAATACTTATCGACTTTTTCTCACTCGCACTATCTTCTCCCTGAGATATTCCAGAATTTGGAGAAAGTTGTGGTTCTGGATGATGATGTTGTTGTCCAGCAGGACTTGTCTGCTCTATGGAGCCTCAACATGGAAGGGAAAGTTAATGCTGCTGTGCAGTTGTGCTCAGTGAAGTTAAGTCTGCTGAAGAGCGTTCTTGGAAAGCACAGTTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

488

Amino Acids

55.12

Weight (kDa)

8.69

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38650 AT2G38650 AT2G38650
fragaria_vesca	FvH4_6g09030 FvH4_6g09030
malus_domestica	MD04G1181600.v1.1 MD04G1182600.v1.1 MD12G1196400.v1.1
prunus_persica	Prupe.6G301000_v2.0.a1 Prupe.6G301000_v2.0.a1
pyrus_communis	pycom04g16050 pycom12g18260
rosa_chinensis	RchiOBHm_Chr3g0459281
rosa_laevigata	RLG00000025097
rosa_multiflora	Rmu_co8275713.1_g000001 Rmu_co8401309.1_g000001 Rmu_sc0009302.1_g000001 Rmu_sc0012999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420340
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092800 Rh3BG095900 Rh3CG096900 Rh3DG096500
rosa_wichuraiana	Rw3G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1303
AccII	CGCG	2 cut(s)	578, 741
AciI	CCGC	8 cut(s)	9, 17, 21, 40, 147, 166, 739, 1177
AclWI	GGATC	3 cut(s)	444, 546, 1083
AcsI	RAATTY	1 cut(s)	1300
AcuI	CTGAAG	1 cut(s)	1451
AcvI	CACGTG	1 cut(s)	1066
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	658, 996
AfiI	CCNNNNNNNGG	4 cut(s)	39, 146, 1303, 1375
AgsI	TTSAA	3 cut(s)	463, 535, 717
AhdI	GACNNNNNGTC	1 cut(s)	601
AluBI	AGCT	7 cut(s)	245, 392, 404, 474, 697, 713, 1162
AluI	AGCT	7 cut(s)	245, 392, 404, 474, 697, 713, 1162
Alw21I	GWGCWC	2 cut(s)	1071, 1412
Alw26I	GTCTC	4 cut(s)	609, 610, 766, 880
AlwI	GGATC	3 cut(s)	444, 546, 1083
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	189, 1159, 1394
ApoI	RAATTY	1 cut(s)	1300
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	4 cut(s)	70, 128, 407, 535
AvaI	CYCGRG	1 cut(s)	555
BauI	CACGAG	1 cut(s)	606
BbrPI	CACGTG	1 cut(s)	1066
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	1071, 1412
BbvI	GCAGC	3 cut(s)	201, 1171, 1381
BccI	CCATC	2 cut(s)	39, 595
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	4 cut(s)	609, 610, 766, 880
BfaI	CTAG	2 cut(s)	570, 1169
BfmI	CTRYAG	2 cut(s)	698, 1219
BglII	AGATCT	1 cut(s)	908
BisI	GCNGC	5 cut(s)	41, 148, 190, 1160, 1395
BlsI	GCNGC	5 cut(s)	42, 149, 191, 1161, 1396
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	1 cut(s)	144
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	555
BmiI	GGNNCC	1 cut(s)	1367
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	505, 1010, 1219
BpiI	GAAGAC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	1066
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 146, 1303, 1375
Bse1I	ACTGG	5 cut(s)	294, 321, 348, 375, 1059
Bse3DI	GCAATG	2 cut(s)	871, 1101
Bse8I	GATNNNNATC	1 cut(s)	669
BseGI	GGATG	4 cut(s)	520, 802, 1001, 1330
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	4 cut(s)	39, 146, 1303, 1375
BseMI	GCAATG	2 cut(s)	871, 1101
BseMII	CTCAG	6 cut(s)	414, 761, 783, 1020, 1278, 1425
BseNI	ACTGG	5 cut(s)	294, 321, 348, 375, 1059
BseRI	GAGGAG	1 cut(s)	903
BseXI	GCAGC	3 cut(s)	201, 1171, 1381
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	1421
Bsh1236I	CGCG	2 cut(s)	578, 741
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	1071, 1412
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	33, 144
BslI	CCNNNNNNNGG	4 cut(s)	39, 146, 1303, 1375
BsmAI	GTCTC	4 cut(s)	609, 610, 766, 880
BsmI	GAATGC	1 cut(s)	962
BsnI	GGCC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	1071, 1412
Bsp143I	GATC	5 cut(s)	436, 538, 670, 908, 1075
Bsp68I	TCGCGA	1 cut(s)	578
BspACI	CCGC	8 cut(s)	9, 17, 21, 40, 147, 166, 739, 1177
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	6 cut(s)	413, 762, 784, 1019, 1279, 1424
BspFNI	CGCG	2 cut(s)	578, 741
BspLI	GGNNCC	1 cut(s)	1367
BspPI	GGATC	3 cut(s)	444, 546, 1083
BspQI	GCTCTTC	1 cut(s)	1427
BsrDI	GCAATG	2 cut(s)	871, 1101
BsrI	ACTGG	5 cut(s)	294, 321, 348, 375, 1059
BssMI	GATC	5 cut(s)	436, 538, 670, 908, 1075
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst4CI	ACNGT	4 cut(s)	895, 1027, 1138, 1454
Bst6I	CTCTTC	4 cut(s)	113, 521, 937, 1427
BstACI	GRCGYC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	1066
BstC8I	GCNNGC	4 cut(s)	19, 38, 711, 1035
BstDEI	CTNAG	7 cut(s)	400, 647, 770, 792, 1006, 1287, 1411
BstF5I	GGATG	4 cut(s)	520, 802, 1001, 1330
BstFNI	CGCG	2 cut(s)	578, 741
BstKTI	GATC	5 cut(s)	439, 541, 673, 911, 1078
BstMAI	GTCTC	4 cut(s)	609, 610, 766, 880
BstMBI	GATC	5 cut(s)	436, 538, 670, 908, 1075
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 719, 873
BstNSI	RCATGY	1 cut(s)	1037
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	698, 1219
BstUI	CGCG	2 cut(s)	578, 741
BstV1I	GCAGC	3 cut(s)	201, 1171, 1381
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	908
BstYI	RGATCY	1 cut(s)	908
BsuRI	GGCC	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	4 cut(s)	520, 802, 1001, 1330
BtsI	GCAGTG	1 cut(s)	1193
BtsIMutI	CAGTG	7 cut(s)	274, 301, 328, 355, 382, 1193, 1419
BtuMI	TCGCGA	1 cut(s)	578
Cac8I	GCNNGC	4 cut(s)	19, 38, 711, 1035
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	657, 995
CviAII	CATG	6 cut(s)	91, 453, 814, 959, 1034, 1375
CviQI	GTAC	2 cut(s)	657, 995
DdeI	CTNAG	7 cut(s)	400, 647, 770, 792, 1006, 1287, 1411
DpnI	GATC	5 cut(s)	438, 540, 672, 910, 1077
DpnII	GATC	5 cut(s)	436, 538, 670, 908, 1075
DriI	GACNNNNNGTC	1 cut(s)	601
Eam1104I	CTCTTC	4 cut(s)	113, 521, 937, 1427
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EarI	CTCTTC	4 cut(s)	113, 521, 937, 1427
EciI	GGCGGA	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	1451
Eco72I	CACGTG	1 cut(s)	1066
Eco88I	CYCGRG	1 cut(s)	555
EcoT22I	ATGCAT	2 cut(s)	964, 1035
FaeI	CATG	6 cut(s)	94, 456, 817, 962, 1037, 1378
FatI	CATG	6 cut(s)	90, 452, 813, 958, 1033, 1374
FauI	CCCGC	2 cut(s)	2, 10
Fnu4HI	GCNGC	5 cut(s)	41, 148, 190, 1160, 1395
FokI	GGATG	4 cut(s)	527, 809, 988, 1337
Fsp4HI	GCNGC	5 cut(s)	41, 148, 190, 1160, 1395
FspBI	CTAG	2 cut(s)	570, 1169
GluI	GCNGC	5 cut(s)	41, 148, 190, 1160, 1395
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	2 cut(s)	33, 144
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	94, 456, 817, 962, 1037, 1378
HincII	GTYRAC	2 cut(s)	382, 760
HindII	GTYRAC	2 cut(s)	382, 760
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	2 cut(s)	398, 929
HpaII	CCGG	2 cut(s)	33, 144
HphI	GGTGA	4 cut(s)	70, 128, 407, 535
Hpy166II	GTNNAC	7 cut(s)	277, 304, 331, 358, 382, 491, 760
Hpy188I	TCNGA	2 cut(s)	908, 1115
Hpy8I	GTNNAC	7 cut(s)	277, 304, 331, 358, 382, 491, 760
Hpy99I	CGWCG	2 cut(s)	161, 1138
HpyAV	CCTTC	7 cut(s)	43, 122, 131, 172, 505, 529, 1373
HpyCH4III	ACNGT	4 cut(s)	895, 1027, 1138, 1454
HpyCH4IV	ACGT	3 cut(s)	951, 993, 1065
HpyCH4V	TGCA	7 cut(s)	709, 962, 1001, 1033, 1037, 1094, 1402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 719, 873
HpyF3I	CTNAG	7 cut(s)	400, 647, 770, 792, 1006, 1287, 1411
HpySE526I	ACGT	3 cut(s)	951, 993, 1065
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	94, 456, 817, 962, 1037, 1378
Kzo9I	GATC	5 cut(s)	436, 538, 670, 908, 1075
LguI	GCTCTTC	1 cut(s)	1427
LmnI	GCTCC	3 cut(s)	471, 637, 1365
Lsp1109I	GCAGC	3 cut(s)	201, 1171, 1381
LweI	GCATC	3 cut(s)	505, 1010, 1219
MaeI	CTAG	2 cut(s)	570, 1169
MaeII	ACGT	3 cut(s)	951, 993, 1065
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	5 cut(s)	438, 540, 672, 910, 1077
MboI	GATC	5 cut(s)	436, 538, 670, 908, 1075
MboII	GAAGA	8 cut(s)	100, 515, 538, 665, 703, 924, 1271, 1444
MflI	RGATCY	1 cut(s)	908
MhlI	GDGCHC	2 cut(s)	1071, 1412
MluCI	AATT	2 cut(s)	1084, 1300
MlyI	GAGTC	2 cut(s)	392, 923
Mph1103I	ATGCAT	2 cut(s)	964, 1035
MseI	TTAA	6 cut(s)	954, 1148, 1164, 1389, 1421, 1462
MslI	CAYNNNNRTG	3 cut(s)	282, 336, 363
MspI	CCGG	2 cut(s)	33, 144
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	962
MvnI	CGCG	2 cut(s)	578, 741
MwoI	GCNNNNNNNGC	3 cut(s)	153, 719, 873
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	5 cut(s)	436, 538, 670, 908, 1075
NlaIII	CATG	6 cut(s)	94, 456, 817, 962, 1037, 1378
NlaIV	GGNNCC	1 cut(s)	1367
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	395
NruI	TCGCGA	1 cut(s)	578
NsiI	ATGCAT	2 cut(s)	964, 1035
NspI	RCATGY	1 cut(s)	1037
PaeI	GCATGC	1 cut(s)	1037
PaeR7I	CTCGAG	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	1427
PctI	GAATGC	1 cut(s)	962
PflMI	CCANNNNNTGG	1 cut(s)	1303
PkrI	GCNGC	5 cut(s)	42, 149, 191, 1161, 1396
PleI	GAGTC	2 cut(s)	392, 923
PmaCI	CACGTG	1 cut(s)	1066
PmlI	CACGTG	1 cut(s)	1066
PpsI	GAGTC	2 cut(s)	392, 923
Ppu21I	YACGTR	1 cut(s)	1066
PspCI	CACGTG	1 cut(s)	1066
PspFI	CCCAGC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	1367
PspXI	VCTCGAGB	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	908
RruI	TCGCGA	1 cut(s)	578
RsaI	GTAC	2 cut(s)	658, 996
RsaNI	GTAC	2 cut(s)	657, 995
RseI	CAYNNNNRTG	3 cut(s)	282, 336, 363
SapI	GCTCTTC	1 cut(s)	1427
SaqAI	TTAA	6 cut(s)	954, 1148, 1164, 1389, 1421, 1462
SatI	GCNGC	5 cut(s)	41, 148, 190, 1160, 1395
Sau3AI	GATC	5 cut(s)	436, 538, 670, 908, 1075
ScaI	AGTACT	1 cut(s)	658
SchI	GAGTC	2 cut(s)	392, 923
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	1071, 1412
SfaNI	GCATC	3 cut(s)	505, 1010, 1219
SfcI	CTRYAG	2 cut(s)	698, 1219
Sfr274I	CTCGAG	1 cut(s)	555
SlaI	CTCGAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	3 cut(s)	282, 336, 363
SmlI	CTYRAG	2 cut(s)	198, 555
SmoI	CTYRAG	2 cut(s)	198, 555
SphI	GCATGC	1 cut(s)	1037
Sse9I	AATT	2 cut(s)	1084, 1300
SsiI	CCGC	8 cut(s)	9, 17, 21, 40, 147, 166, 739, 1177
SspI	AATATT	3 cut(s)	232, 625, 902
SspMI	CTAG	2 cut(s)	570, 1169
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	895, 1027, 1138, 1454
TaiI	ACGT	3 cut(s)	954, 996, 1068
TaqI	TCGA	5 cut(s)	178, 556, 669, 1256, 1458
TasI	AATT	2 cut(s)	1084, 1300
TatI	WGTACW	1 cut(s)	656
TauI	GCSGC	2 cut(s)	43, 150
Tru1I	TTAA	6 cut(s)	954, 1148, 1164, 1389, 1421, 1462
Tru9I	TTAA	6 cut(s)	954, 1148, 1164, 1389, 1421, 1462
TscAI	CASTG	7 cut(s)	274, 301, 328, 355, 382, 1200, 1419
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	3 cut(s)	189, 1159, 1394
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	9 cut(s)	17, 267, 300, 327, 354, 381, 813, 830, 1112
TspGWI	ACGGA	3 cut(s)	1088, 1199, 1259
TspRI	CASTG	7 cut(s)	274, 301, 328, 355, 382, 1200, 1419
Van91I	CCANNNNNTGG	1 cut(s)	1303
XapI	RAATTY	1 cut(s)	1300
XbaI	TCTAGA	1 cut(s)	1168
XceI	RCATGY	1 cut(s)	1037
XhoI	CTCGAG	1 cut(s)	555
XspI	CTAG	2 cut(s)	570, 1169
ZrmI	AGTACT	1 cut(s)	658
Zsp2I	ATGCAT	2 cut(s)	964, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.