Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007292

Physical Location & Seq

Genomic Coordinates Forward (+)

7682804 .. 7688283

Gene Structure 5480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG095900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGGCGTACGCCGGAAAGAAGAGATGGAGAGGTTTGGTGGTAGGAGTCTTAGGCCTCGTTTTGCTTTCTATGCTCGTTCCTCTTCTCTTCCTTCTCGGTATTCACAATGGCTTTCAAGGATATGGTTCGGAGCAGCCGAATTCGCCTACGCATACTACACCAATCATCATCAATACCAATTCTAATCAAGCCGAGGAGGATCATGTAAAGCGTATAGAGAATCTTGTGAAACAGCTTGCACCACCAATTTTTCAGGAAATACTAAAGAATATCTCACACAAAGCTGAAAATAAAACCAAAAATCAGGTTATCGTGCAGAACAATGAAGGAGGAAAAGGGTTTCCAGCCCCGCCTCAGGACTTTCCACAATCCCCTTCTCTAAAAAATAACTCTAAAGTTGATGAAAAAGTTGAAATGATTGATTATGCCAAAGGTGGTATTGATGAAAGTGGAAAGTCATGTGAATTGAAATTTGGGAGTTACTGCCGTTGGCGGCAAGAACATAAAGAAGAAATGAAGGATTCTATGGTGAAGAGATTGAAGGATTCACTATTTGTGGCAAGAGCATATTTTCCTACCATTGCAAAACTTCCATCTCAACGCAAGTTCTCTGGTGAAATGAAACAAAACATTCAAGAGCTGGAGAAAGTTCTTAGTGAAAGTACTACAGATGCTGATCTTCCATCACAGATTGGGAAGAAGCTTGAGAGGATGCATGCTGTGATAGCTAAAGCCAAAACCTTCCCTGTGGAATGTCATAATGTTGACAAGAAGCTGAGACAGATATTTGATATGACTGCAGATGAAGCTAATTTCCACATGAAACAAAGTGTCTTCCTCTACCAACTTGCAGTCCAGACTATGCCAAAGAGTCTCCACTGCTTGTCTATGAGACTGACTGTGGAATTTTTCAGAAATCCTGTTTATGATAAGGAGTCTCTAGCGAGCAAATACAATGATCCTGCATTGCAGCACTATGTCATACTCTCCACCAATGTACTTGCATTATCAGTTGTAATCAACTCAACTGTAATGCATGCAAAAGAAAGTGGGAAACTGGTTTTTCATGTACTGACGGATCAACAGAATTACTTTGCGATGAAACTATGGTTCTTTAGAAATACTTACAAAGAAGCCATAGTTCAGGTGTTAAACCTGGAGGAGCTTGACAGCCGCAAATTATACCTGTCGTTGCCTGTGGAGTTCCGTGTTTCCTTTGGCATTGGTGCTGAAGCTAGAACGGAATACTTATCTATTTTTTCTCATTCACACTATCTTCTTCCTGAGATATTCCCGAATTTGGAGAAAGTTGTGGTTTTGGATGAAGATGTTGTTGTACAGCAGGACTTGTCTGCACTTTGGAGCCTTAACATGGAAGGAAAAGTTAATGCTGCTGTACAGTTCTGCTCTGTGAAGTTGAGTAATCTTATGAAGAGATTCGTTGGTGAGAACAGTTTTGATAAAACCTCATGTGCTTGGATGTCTGGATTGAATGTCATTGATCTGGTTAAGTGGAGAGAACTTGATCTCACTGAAACTTACCGAAGGTTTGTAAATGAGGTGAGTATCATTGCAAGTTGTCCTAATATCTATGATCAGAGCAATTATTCTGAGTTACCTGAGGTTTTGATGATGCTTTGCATTGAACCATATATAAAACATAGGAAAATATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

558

Amino Acids

63.8

Weight (kDa)

8.21

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAUT_1	PF25557	173 - 248	3.5e-24	Galacturonosyltransferase domain 1
Glyco_transf_8	PF01501	294 - 520	2.1e-29	Glycosyl transferase family 8
Glyco_transf_24	PF18404	415 - 523	6e-08	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38650 AT2G38650 AT2G38650
fragaria_vesca	FvH4_6g09030 FvH4_6g09030
malus_domestica	MD04G1181600.v1.1 MD04G1182600.v1.1 MD12G1196400.v1.1
prunus_persica	Prupe.6G301000_v2.0.a1 Prupe.6G301000_v2.0.a1
pyrus_communis	pycom04g16050 pycom12g18260
rosa_chinensis	RchiOBHm_Chr3g0459281
rosa_laevigata	RLG00000025097
rosa_multiflora	Rmu_co8275713.1_g000001 Rmu_co8401309.1_g000001 Rmu_sc0009302.1_g000001 Rmu_sc0012999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420340
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092800 Rh3BG095900 Rh3CG096900 Rh3DG096500
rosa_wichuraiana	Rw3G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	350, 493, 1174
AclWI	GGATC	3 cut(s)	207, 953, 1086
AcsI	RAATTY	4 cut(s)	139, 470, 905, 1297
AcuI	CTGAAG	1 cut(s)	1251
AfaI	GTAC	6 cut(s)	8, 664, 999, 1071, 1338, 1398
AfiI	CCNNNNNNNGG	3 cut(s)	355, 1300, 1372
AgsI	TTSAA	7 cut(s)	116, 413, 469, 541, 635, 1492, 1646
AjnI	CCWGG	1 cut(s)	1155
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	9 cut(s)	235, 284, 640, 703, 728, 775, 809, 1165, 1235
AluI	AGCT	9 cut(s)	235, 284, 640, 703, 728, 775, 809, 1165, 1235
Alw26I	GTCTC	4 cut(s)	772, 878, 886, 942
AlwI	GGATC	3 cut(s)	207, 953, 1086
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	133, 970, 1391
ApoI	RAATTY	4 cut(s)	139, 470, 905, 1297
Asp700I	GAANNNNTTC	1 cut(s)	1436
AsuHPI	GGTGA	4 cut(s)	541, 626, 1457, 1573
AxyI	CCTNAGG	2 cut(s)	354, 1620
BbsI	GAAGAC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	145, 982, 1378
BccI	CCATC	3 cut(s)	18, 601, 691
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	1157
BclI	TGATCA	1 cut(s)	1594
BcoDI	GTCTC	4 cut(s)	772, 878, 886, 942
BfaI	CTAG	2 cut(s)	941, 1236
BfmI	CTRYAG	2 cut(s)	666, 798
BisI	GCNGC	5 cut(s)	134, 494, 971, 1174, 1392
BlsI	GCNGC	5 cut(s)	135, 495, 972, 1175, 1393
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	1 cut(s)	1157
BmiI	GGNNCC	1 cut(s)	1364
BmrFI	CCNGG	1 cut(s)	1157
BmsI	GCATC	3 cut(s)	661, 702, 1623
BpiI	GAAGAC	1 cut(s)	826
BpmI	CTGGAG	2 cut(s)	662, 1178
BpuEI	CTTGAG	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 1300, 1372
Bse1I	ACTGG	1 cut(s)	1062
Bse21I	CCTNAGG	2 cut(s)	354, 1620
Bse3DI	GCAATG	3 cut(s)	579, 965, 1569
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	1157
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	717, 1327, 1485
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	3 cut(s)	355, 1300, 1372
BseMI	GCAATG	3 cut(s)	579, 965, 1569
BseMII	CTCAG	5 cut(s)	368, 767, 1275, 1602, 1611
BseNI	ACTGG	1 cut(s)	1062
BseRI	GAGGAG	2 cut(s)	209, 1175
BseXI	GCAGC	3 cut(s)	145, 982, 1378
BsgI	GTGCAG	2 cut(s)	335, 1338
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	12
BsiWI	CGTACG	1 cut(s)	6
BslI	CCNNNNNNNGG	3 cut(s)	355, 1300, 1372
BsmAI	GTCTC	4 cut(s)	772, 878, 886, 942
BsnI	GGCC	1 cut(s)	54
Bsp1407I	TGTACA	2 cut(s)	1336, 1396
Bsp143I	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
BspACI	CCGC	3 cut(s)	350, 493, 1174
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	5 cut(s)	367, 768, 1276, 1603, 1612
BspLI	GGNNCC	1 cut(s)	1364
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	3 cut(s)	207, 953, 1086
BsrDI	GCAATG	3 cut(s)	579, 965, 1569
BsrGI	TGTACA	2 cut(s)	1336, 1396
BsrI	ACTGG	1 cut(s)	1062
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
Bst2UI	CCWGG	1 cut(s)	1157
Bst4CI	ACNGT	4 cut(s)	901, 1030, 1401, 1454
Bst6I	CTCTTC	5 cut(s)	14, 87, 92, 527, 1427
BstAUI	TGTACA	2 cut(s)	1336, 1396
BstC8I	GCNNGC	4 cut(s)	237, 717, 946, 1038
BstDEI	CTNAG	7 cut(s)	49, 354, 653, 776, 1284, 1611, 1620
BstF5I	GGATG	3 cut(s)	717, 1327, 1485
BstKTI	GATC	7 cut(s)	202, 679, 961, 1081, 1504, 1528, 1597
BstMAI	GTCTC	4 cut(s)	772, 878, 886, 942
BstMBI	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 142, 725, 806
BstNI	CCWGG	1 cut(s)	1157
BstNSI	RCATGY	2 cut(s)	719, 1040
BstSCI	CCNGG	1 cut(s)	1155
BstSFI	CTRYAG	2 cut(s)	666, 798
BstV1I	GCAGC	3 cut(s)	145, 982, 1378
BstV2I	GAAGAC	1 cut(s)	826
Bsu36I	CCTNAGG	2 cut(s)	354, 1620
BsuRI	GGCC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	1112
BtsCI	GGATG	3 cut(s)	717, 1327, 1485
BtsI	GCAGTG	1 cut(s)	877
BtsIMutI	CAGTG	2 cut(s)	877, 1530
Cac8I	GCNNGC	4 cut(s)	237, 717, 946, 1038
CaiI	CAGNNNCTG	1 cut(s)	674
Csp6I	GTAC	6 cut(s)	7, 663, 998, 1070, 1337, 1397
CviAII	CATG	8 cut(s)	203, 459, 716, 820, 1037, 1067, 1372, 1470
CviQI	GTAC	6 cut(s)	7, 663, 998, 1070, 1337, 1397
DdeI	CTNAG	7 cut(s)	49, 354, 653, 776, 1284, 1611, 1620
DpnI	GATC	7 cut(s)	201, 678, 960, 1080, 1503, 1527, 1596
DpnII	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
Eam1104I	CTCTTC	5 cut(s)	14, 87, 92, 527, 1427
EarI	CTCTTC	5 cut(s)	14, 87, 92, 527, 1427
Eco147I	AGGCCT	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	1251
Eco81I	CCTNAGG	2 cut(s)	354, 1620
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	1155
EcoT22I	ATGCAT	2 cut(s)	717, 1038
FaeI	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
FatI	CATG	8 cut(s)	202, 458, 715, 819, 1036, 1066, 1371, 1469
FauI	CCCGC	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	1594
Fnu4HI	GCNGC	5 cut(s)	134, 494, 971, 1174, 1392
FokI	GGATG	3 cut(s)	724, 1334, 1492
Fsp4HI	GCNGC	5 cut(s)	134, 494, 971, 1174, 1392
FspBI	CTAG	2 cut(s)	941, 1236
GluI	GCNGC	5 cut(s)	134, 494, 971, 1174, 1392
GsuI	CTGGAG	2 cut(s)	662, 1178
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	7 cut(s)	45, 220, 521, 545, 871, 935, 1437
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	4 cut(s)	541, 626, 1457, 1573
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	4 cut(s)	130, 914, 1599, 1612
Hpy188III	TCNNGA	7 cut(s)	254, 356, 635, 856, 1283, 1294, 1485
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	8 cut(s)	101, 320, 384, 511, 535, 751, 1370, 1539
HpyCH4III	ACNGT	4 cut(s)	901, 1030, 1401, 1454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 142, 725, 806
HpyF3I	CTNAG	7 cut(s)	49, 354, 653, 776, 1284, 1611, 1620
Hsp92II	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
Ksp22I	TGATCA	1 cut(s)	1594
Kzo9I	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
LmnI	GCTCC	3 cut(s)	130, 1162, 1362
Lsp1109I	GCAGC	3 cut(s)	145, 982, 1378
LweI	GCATC	3 cut(s)	661, 702, 1623
MaeI	CTAG	2 cut(s)	941, 1236
MaeIII	GTNAC	2 cut(s)	479, 1614
MalI	GATC	7 cut(s)	201, 678, 960, 1080, 1503, 1527, 1596
MboI	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
MlyI	GAGTC	3 cut(s)	54, 880, 944
Mph1103I	ATGCAT	2 cut(s)	717, 1038
MroXI	GAANNNNTTC	1 cut(s)	1436
MseI	TTAA	4 cut(s)	1151, 1368, 1386, 1509
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	1157
MvaI	CCWGG	1 cut(s)	1157
MwoI	GCNNNNNNNGC	4 cut(s)	70, 142, 725, 806
NdeII	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
NlaIII	CATG	8 cut(s)	206, 462, 719, 823, 1040, 1070, 1375, 1473
NlaIV	GGNNCC	1 cut(s)	1364
NmeAIII	GCCGAG	1 cut(s)	217
NsiI	ATGCAT	2 cut(s)	717, 1038
NspI	RCATGY	2 cut(s)	719, 1040
PaeI	GCATGC	2 cut(s)	719, 1040
PceI	AGGCCT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	1436
PfeI	GAWTC	4 cut(s)	220, 521, 545, 1437
Pfl23II	CGTACG	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	135, 495, 972, 1175, 1393
PleI	GAGTC	3 cut(s)	53, 879, 943
PpsI	GAGTC	3 cut(s)	53, 879, 943
Psp6I	CCWGG	1 cut(s)	1155
PspGI	CCWGG	1 cut(s)	1155
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	1364
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	1 cut(s)	674
RsaI	GTAC	6 cut(s)	8, 664, 999, 1071, 1338, 1398
RsaNI	GTAC	6 cut(s)	7, 663, 998, 1070, 1337, 1397
SaqAI	TTAA	4 cut(s)	1151, 1368, 1386, 1509
SatI	GCNGC	5 cut(s)	134, 494, 971, 1174, 1392
Sau3AI	GATC	7 cut(s)	199, 676, 958, 1078, 1501, 1525, 1594
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	3 cut(s)	54, 880, 944
ScrFI	CCNGG	1 cut(s)	1157
SfaNI	GCATC	3 cut(s)	661, 702, 1623
SfcI	CTRYAG	2 cut(s)	666, 798
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SphI	GCATGC	2 cut(s)	719, 1040
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	3 cut(s)	350, 493, 1174
SspMI	CTAG	2 cut(s)	941, 1236
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	1155
TaaI	ACNGT	4 cut(s)	901, 1030, 1401, 1454
TatI	WGTACW	5 cut(s)	662, 997, 1069, 1336, 1396
TauI	GCSGC	2 cut(s)	496, 1176
TfiI	GAWTC	4 cut(s)	220, 521, 545, 1437
Tru1I	TTAA	4 cut(s)	1151, 1368, 1386, 1509
Tru9I	TTAA	4 cut(s)	1151, 1368, 1386, 1509
TscAI	CASTG	2 cut(s)	884, 1537
TseI	GCWGC	3 cut(s)	133, 970, 1391
TspGWI	ACGGA	3 cut(s)	1091, 1196, 1256
TspRI	CASTG	2 cut(s)	884, 1537
XapI	RAATTY	4 cut(s)	139, 470, 905, 1297
XceI	RCATGY	2 cut(s)	719, 1040
XmnI	GAANNNNTTC	1 cut(s)	1436
XspI	CTAG	2 cut(s)	941, 1236
ZrmI	AGTACT	1 cut(s)	664
Zsp2I	ATGCAT	2 cut(s)	717, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.