Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Forward (+)

7633665 .. 7634602

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCGATGCCACCGATGGCGCCCATGCCGCCCATGCCGCCGATGGCTCCCATGCCACCGATGCCGCCGATGGCACCGATGGCACCGATGCAGATGACTCCACCTTCGGGCGACCTGAGCAACACATCCATGATCATGAACAACAACCTCCACTGGGGCATCGACGCCACTATACTCTTCTCCGGCTGGCCAGGCCACCACCACCCCGGCATGTACGTCTTATCTCTCGTCTTCCTCTTCCTCCTCGCCATCGCCATCGAGGTTCTTTCAGTGGGGCCTACTCTGAAGCCAGCCGCCACTCCTCTAGTCTCCGGCGTCACTCAGACGGGTATATATGCCCTGCGCACGGTTTTGGCATACTTGGTCATGTTATCTGTCATGTCCTTCAATATTGGAATCCTCATAGCCGTGGTGGCTGGCCACGCCCTAGGTTTCTTTGTCGTCAAGGTTCGTGCGCTTAACCACATCGCCGGCCAAGGCCAAGTCGACTCGAACGATCCGCTCAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

171

Amino Acids

18.06

Weight (kDa)

7.01

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	102 - 147	2.3e-10	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	344
AccB1I	GGYRCC	3 cut(s)	19, 73, 82
AccBSI	CCGCTC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	5 cut(s)	29, 38, 65, 294, 500
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	3 cut(s)	188, 418, 472
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	3 cut(s)	20, 165, 315
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	107, 154, 346
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	6 cut(s)	188, 193, 275, 418, 472, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	22, 345, 457
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	207
AvrII	CCTAGG	1 cut(s)	427
BalI	TGGCCA	2 cut(s)	190, 420
BanI	GGYRCC	3 cut(s)	19, 73, 82
BbsI	GAAGAC	1 cut(s)	223
BccI	CCATC	6 cut(s)	10, 37, 64, 73, 257, 263
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	192
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	2 cut(s)	305, 428
BfoI	RGCGCY	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	4 cut(s)	29, 38, 65, 294
BlnI	CCTAGG	1 cut(s)	427
BlsI	GCNGC	4 cut(s)	30, 39, 66, 295
Bme1390I	CCNGG	2 cut(s)	192, 207
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	5 cut(s)	21, 48, 75, 84, 276
BmrFI	CCNGG	2 cut(s)	192, 207
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	3 cut(s)	51, 78, 168
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	207
BsaHI	GRCGYC	3 cut(s)	20, 165, 315
BsaJI	CCNNGG	4 cut(s)	205, 408, 427, 475
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 154, 346
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	4 cut(s)	205, 408, 427, 475
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	107, 154, 346
BseMII	CTCAG	2 cut(s)	107, 335
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	233, 291
BshFI	GGCC	6 cut(s)	190, 195, 277, 420, 474, 480
BshNI	GGYRCC	3 cut(s)	19, 73, 82
BsiSI	CCGG	4 cut(s)	183, 207, 312, 471
BslI	CCNNNNNNNGG	3 cut(s)	107, 154, 346
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	6 cut(s)	190, 195, 277, 420, 474, 480
Bsp143I	GATC	2 cut(s)	132, 496
BspACI	CCGC	5 cut(s)	29, 38, 65, 294, 500
BspANI	GGCC	6 cut(s)	190, 195, 277, 420, 474, 480
BspCNI	CTCAG	2 cut(s)	108, 334
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	5 cut(s)	21, 48, 75, 84, 276
BspPI	GGATC	1 cut(s)	491
BspT107I	GGYRCC	3 cut(s)	19, 73, 82
BsrBI	CCGCTC	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	4 cut(s)	205, 408, 427, 475
BssMI	GATC	2 cut(s)	132, 496
BssNI	GRCGYC	3 cut(s)	20, 165, 315
BssT1I	CCWWGG	2 cut(s)	427, 475
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	182, 242
BstACI	GRCGYC	3 cut(s)	20, 165, 315
BstC8I	GCNNGC	4 cut(s)	188, 291, 418, 472
BstDEI	CTNAG	2 cut(s)	116, 321
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	3 cut(s)	22, 345, 457
BstKTI	GATC	2 cut(s)	135, 499
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	2 cut(s)	132, 496
BstMWI	GCNNNNNNNGC	9 cut(s)	28, 34, 37, 61, 80, 117, 192, 413, 422
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	190, 205
BstV2I	GAAGAC	1 cut(s)	223
BsuRI	GGCC	6 cut(s)	190, 195, 277, 420, 474, 480
BtgI	CCRYGG	1 cut(s)	408
BtgZI	GCGATG	2 cut(s)	235, 451
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	151, 276
Cac8I	GCNNGC	4 cut(s)	188, 291, 418, 472
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	3 cut(s)	22, 345, 457
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	2 cut(s)	173, 304
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	8 cut(s)	25, 34, 52, 130, 136, 211, 367, 379
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	116, 321
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	2 cut(s)	134, 498
DpnII	GATC	2 cut(s)	132, 496
EaeI	YGGCCR	3 cut(s)	188, 418, 472
Eam1104I	CTCTTC	2 cut(s)	182, 242
EarI	CTCTTC	2 cut(s)	182, 242
Eco130I	CCWWGG	2 cut(s)	427, 475
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	427, 475
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	427, 475
FaeI	CATG	8 cut(s)	28, 37, 55, 133, 139, 214, 370, 382
FatI	CATG	8 cut(s)	24, 33, 51, 129, 135, 210, 366, 378
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	4 cut(s)	29, 38, 65, 294
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	4 cut(s)	29, 38, 65, 294
FspBI	CTAG	2 cut(s)	305, 428
FspI	TGCGCA	1 cut(s)	344
GlaI	GCGC	3 cut(s)	21, 344, 456
GluI	GCNGC	4 cut(s)	29, 38, 65, 294
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	6 cut(s)	190, 195, 277, 420, 474, 480
HapII	CCGG	4 cut(s)	183, 207, 312, 471
HgaI	GACGC	2 cut(s)	173, 304
HhaI	GCGC	3 cut(s)	22, 345, 457
Hin1I	GRCGYC	3 cut(s)	20, 165, 315
Hin1II	CATG	8 cut(s)	28, 37, 55, 133, 139, 214, 370, 382
Hin6I	GCGC	3 cut(s)	20, 343, 455
HinP1I	GCGC	3 cut(s)	20, 343, 455
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	3 cut(s)	97, 396, 488
HpaII	CCGG	4 cut(s)	183, 207, 312, 471
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	2 cut(s)	285, 324
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	114, 394
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	9 cut(s)	28, 34, 37, 61, 80, 117, 192, 413, 422
HpyF3I	CTNAG	2 cut(s)	116, 321
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	3 cut(s)	20, 165, 315
Hsp92II	CATG	8 cut(s)	28, 37, 55, 133, 139, 214, 370, 382
HspAI	GCGC	3 cut(s)	20, 343, 455
KasI	GGCGCC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	132, 496
LmnI	GCTCC	1 cut(s)	52
LweI	GCATC	3 cut(s)	51, 78, 168
MaeI	CTAG	2 cut(s)	305, 428
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	134, 498
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	2 cut(s)	132, 496
MboII	GAAGA	3 cut(s)	169, 223, 229
MlsI	TGGCCA	2 cut(s)	190, 420
MluNI	TGGCCA	2 cut(s)	190, 420
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	91, 482
MnlI	CCTC	7 cut(s)	158, 245, 251, 253, 254, 312, 410
Mox20I	TGGCCA	2 cut(s)	190, 420
MroNI	GCCGGC	1 cut(s)	470
MscI	TGGCCA	2 cut(s)	190, 420
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	3 cut(s)	128, 134, 407
Msp20I	TGGCCA	2 cut(s)	190, 420
MspI	CCGG	4 cut(s)	183, 207, 312, 471
MspR9I	CCNGG	2 cut(s)	192, 207
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	9 cut(s)	28, 34, 37, 61, 80, 117, 192, 413, 422
NaeI	GCCGGC	1 cut(s)	472
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	132, 496
NgoMIV	GCCGGC	1 cut(s)	470
NlaIII	CATG	8 cut(s)	28, 37, 55, 133, 139, 214, 370, 382
NlaIV	GGNNCC	5 cut(s)	21, 48, 75, 84, 276
NmuCI	GTSAC	1 cut(s)	316
NsbI	TGCGCA	1 cut(s)	344
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 492
PdiI	GCCGGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	396
PkrI	GCNGC	4 cut(s)	30, 39, 66, 295
PleI	GAGTC	2 cut(s)	91, 482
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	2 cut(s)	91, 482
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	5 cut(s)	21, 48, 75, 84, 276
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	3 cut(s)	128, 134, 407
SalI	GTCGAC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	4 cut(s)	29, 38, 65, 294
Sau3AI	GATC	2 cut(s)	132, 496
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	91, 482
ScrFI	CCNGG	2 cut(s)	192, 207
SetI	ASST	7 cut(s)	106, 117, 150, 219, 264, 433, 450
SfaNI	GCATC	3 cut(s)	51, 78, 168
SfoI	GGCGCC	1 cut(s)	21
SmiMI	CAYNNNNRTG	3 cut(s)	128, 134, 407
SsiI	CCGC	5 cut(s)	29, 38, 65, 294, 500
SspDI	GGCGCC	1 cut(s)	19
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	2 cut(s)	305, 428
StyD4I	CCNGG	2 cut(s)	190, 205
StyI	CCWWGG	2 cut(s)	427, 475
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	5 cut(s)	5, 162, 258, 486, 491
TauI	GCSGC	4 cut(s)	31, 40, 67, 296
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	158, 276
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	158, 276
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaJI	CCTAGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	305, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.