Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Reverse (-)

15816702 .. 15817067

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTCCTCCGCCCAAGGGCAGTGATGAGCAGCAGCCTCACATATGGGGCAAAGATGTCATCATCGTCTTCCACGACTGGCCTAACAACCACCTCAACAAATATGTCTTGGCTCTCTTCTTCATCTTCCTCCTCGCTGTCGCCATCGAGATATTGTCCGTTTTGCCCAAACACCGACCAAGCACCAAACCCTACCTATCCCTCCTCGGCCAGACCAGCGTCCACACTTTTCGTACTGGTTTGCCTTACCTGATCATGATCTCCGTCATATCGTTCAATATCGGAATCCTCATCGTCACCCTGGCCAGCCATACCGTAGGTTTCTTCATCGTTAAGGTTCGCGATCATGGCCACCTCCCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

122

Amino Acids

13.62

Weight (kDa)

9.46

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	1 cut(s)	11
AcoI	YGGCCR	3 cut(s)	208, 303, 349
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	300
AoxI	GGCC	4 cut(s)	80, 208, 303, 349
ApeKI	GCWGC	2 cut(s)	31, 34
AsuHPI	GGTGA	1 cut(s)	289
BalI	TGGCCA	2 cut(s)	305, 351
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	43, 46
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	1 cut(s)	252
BisI	GCNGC	2 cut(s)	32, 35
BlsI	GCNGC	2 cut(s)	33, 36
Bme1390I	CCNGG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	302
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	15, 205, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	83, 241
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	3 cut(s)	15, 205, 300
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	83, 241
BseRI	GAGGAG	2 cut(s)	122, 194
BseXI	GCAGC	2 cut(s)	43, 46
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	82, 210, 305, 351
BslI	CCNNNNNNNGG	1 cut(s)	17
BsnI	GGCC	4 cut(s)	82, 210, 305, 351
Bsp143I	GATC	3 cut(s)	252, 258, 343
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	4 cut(s)	82, 210, 305, 351
BspFNI	CGCG	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	83, 241
BssECI	CCNNGG	3 cut(s)	15, 205, 300
BssMI	GATC	3 cut(s)	252, 258, 343
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	3 cut(s)	255, 261, 346
BstMBI	GATC	3 cut(s)	252, 258, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 348
BstNI	CCWGG	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	300
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	43, 46
BstV2I	GAAGAC	1 cut(s)	61
BsuRI	GGCC	4 cut(s)	82, 210, 305, 351
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
BtuMI	TCGCGA	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	307
CciI	TCATGA	1 cut(s)	255
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	256, 347
CviJI	RGCY	8 cut(s)	5, 37, 82, 113, 210, 305, 309, 351
CviKI_1	RGCY	8 cut(s)	5, 37, 82, 113, 210, 305, 309, 351
CviQI	GTAC	1 cut(s)	234
DpnI	GATC	3 cut(s)	254, 260, 345
DpnII	GATC	3 cut(s)	252, 258, 343
EaeI	YGGCCR	3 cut(s)	208, 303, 349
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	259, 350
FaiI	YATR	7 cut(s)	44, 46, 105, 257, 269, 312, 348
FatI	CATG	2 cut(s)	255, 346
FauNDI	CATATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	32, 35
Fsp4HI	GCNGC	2 cut(s)	32, 35
GluI	GCNGC	2 cut(s)	32, 35
HaeIII	GGCC	4 cut(s)	82, 210, 305, 351
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	259, 350
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	3 cut(s)	148, 256, 341
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 348
Hsp92II	CATG	2 cut(s)	259, 350
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	252, 258, 343
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	8 cut(s)	64, 222, 224, 229, 263, 287, 314, 319
Lsp1109I	GCAGC	2 cut(s)	43, 46
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	254, 260, 345
MboI	GATC	3 cut(s)	252, 258, 343
MboII	GAAGA	5 cut(s)	61, 109, 112, 118, 316
MlsI	TGGCCA	2 cut(s)	305, 351
MluNI	TGGCCA	2 cut(s)	305, 351
MnlI	CCTC	9 cut(s)	18, 48, 104, 140, 143, 212, 215, 299, 365
Mox20I	TGGCCA	2 cut(s)	305, 351
MscI	TGGCCA	2 cut(s)	305, 351
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	2 cut(s)	305, 351
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	216, 348
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	3 cut(s)	252, 258, 343
NlaIII	CATG	2 cut(s)	259, 350
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	295
NruI	TCGCGA	1 cut(s)	342
PagI	TCATGA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	33, 36
PshAI	GACNNNNGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	6
RruI	TCGCGA	1 cut(s)	342
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	32, 35
Sau3AI	GATC	3 cut(s)	252, 258, 343
ScrFI	CCNGG	1 cut(s)	302
SetI	ASST	6 cut(s)	96, 198, 252, 322, 339, 357
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	31, 34
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	112, 316
TspGWI	ACGGA	2 cut(s)	148, 253
TspRI	CASTG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.