Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Reverse (-)

22886233 .. 22886523

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1140400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGCAAAGATGTCATCATCCTCTTCCACGACGGGCCCAACAACCACCTCAACATGTATGTCTTGGCTCTCTTCTTCATCTACCTCCTCGCTGTCACCGTCGATATATTGTTCGTTTTGCCCAAACACCGACCAAGCACCAAACCCTACCTATCCCTCCTCGGCCAGACCAGCGTCCACACTTTTCGAAATGGTTTGGCTTACCTGATCATGATCTCTGCCATGTCATTCAATATCGGAATCCTCATGGCCGCCCTGGGGCAGCCATGGCGTAGGTTTCTTCATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

97

Amino Acids

10.97

Weight (kDa)

10.11

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	47 - 86	6e-06	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AcoI	YGGCCR	2 cut(s)	163, 249
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	255
AoxI	GGCC	3 cut(s)	35, 163, 249
ApaI	GGGCCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	262
AspS9I	GGNCC	2 cut(s)	35, 36
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	207
BisI	GCNGC	2 cut(s)	252, 263
BlsI	GCNGC	2 cut(s)	253, 264
Bme1390I	CCNGG	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	35, 36
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	257
BoxI	GACNNNNGTC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	160, 255, 256, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	4 cut(s)	160, 255, 256, 266
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	77, 149
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	3 cut(s)	37, 165, 251
BslI	CCNNNNNNNGG	1 cut(s)	258
BsnI	GGCC	3 cut(s)	37, 165, 251
Bsp119I	TTCGAA	1 cut(s)	187
Bsp120I	GGGCCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	207, 213
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	3 cut(s)	37, 165, 251
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	187
BssECI	CCNNGG	4 cut(s)	160, 255, 256, 266
BssMI	GATC	2 cut(s)	207, 213
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	29, 77
BstBI	TTCGAA	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	210, 216
BstMBI	GATC	2 cut(s)	207, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 268
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	37, 165, 251
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	18
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	35, 36
CseI	GACGC	1 cut(s)	163
CviAII	CATG	5 cut(s)	55, 211, 223, 247, 267
CviJI	RGCY	6 cut(s)	37, 68, 165, 200, 251, 265
CviKI_1	RGCY	6 cut(s)	37, 68, 165, 200, 251, 265
DpnI	GATC	2 cut(s)	209, 215
DpnII	GATC	2 cut(s)	207, 213
EaeI	YGGCCR	2 cut(s)	163, 249
Eam1104I	CTCTTC	2 cut(s)	29, 77
EarI	CTCTTC	2 cut(s)	29, 77
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	5 cut(s)	58, 214, 226, 250, 270
FaiI	YATR	7 cut(s)	56, 60, 107, 212, 224, 248, 268
FatI	CATG	5 cut(s)	54, 210, 222, 246, 266
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	252, 263
FokI	GGATG	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	252, 263
GluI	GCNGC	2 cut(s)	252, 263
HaeIII	GGCC	3 cut(s)	37, 165, 251
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	5 cut(s)	58, 214, 226, 250, 270
HinfI	GANTC	1 cut(s)	240
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	35, 104
HpyCH4III	ACNGT	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 268
Hsp92II	CATG	5 cut(s)	58, 214, 226, 250, 270
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	207, 213
LpnPI	CCDG	5 cut(s)	179, 184, 218, 242, 269
Lsp1109I	GCAGC	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	209, 215
MboI	GATC	2 cut(s)	207, 213
MboII	GAAGA	4 cut(s)	16, 64, 67, 272
MhlI	GDGCHC	1 cut(s)	39
MnlI	CCTC	7 cut(s)	32, 59, 95, 98, 167, 170, 254
MseI	TTAA	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	171, 268
NcoI	CCATGG	1 cut(s)	266
NdeII	GATC	2 cut(s)	207, 213
NlaIII	CATG	5 cut(s)	58, 214, 226, 250, 270
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	187
PagI	TCATGA	1 cut(s)	210
PasI	CCCWGGG	1 cut(s)	256
PciI	ACATGT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	253, 264
PscI	ACATGT	1 cut(s)	54
PshAI	GACNNNNGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	37
PspOMI	GGGCCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	35, 36
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	2 cut(s)	252, 263
Sau3AI	GATC	2 cut(s)	207, 213
Sau96I	GGNCC	2 cut(s)	35, 36
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	5 cut(s)	51, 87, 153, 207, 278
SfuI	TTCGAA	1 cut(s)	187
SsiI	CCGC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	102, 187
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	67, 272
XceI	RCATGY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.