Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Reverse (-)

37769362 .. 37769859

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTCACGAGGTACACGATGAAGGTGGTACGCTGATGCCGCCGATGCCACCGATGCCGATGAGTACTCCACCACCAACAAAGCCTATGGGCGACCTGAGCAACACATCTGATTATTCCATGAGCATGAACAACAGCCTCTACTGGGGCAAAAACGTTACCATACTCTTTTCCGGCTGGCCGGGGCATGACCACCTCGGCATGTACGTCTTGTCTCTCTCCCTCCTCTTCCTCCTCGCCGTCGCCGTCGAGATTCTTTCCGTGGGGCCTACCCTGAAGCCGACCGCCACTCCTCTAGTCTCCGGGTTCACTCAGACGGGTATTTATGCACTGCGCACCGTTTTGGCTTACTTGGTCATGCTATCTGTCATGTCCTTCAATGTTGGAATCCTCATAGCCGTGGTGGCTGGCCATGCCCTAGGTTTCTTTGTCGTCAAGGTTCGTGCGCTTAACCAGCTCGCCAGCCAAGCCGACTCGACCGATCCGCTCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

165

Amino Acids

17.66

Weight (kDa)

6.15

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	99 - 144	6.6e-11	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	487
AciI	CCGC	3 cut(s)	41, 285, 485
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	2 cut(s)	179, 409
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	4 cut(s)	15, 31, 67, 206
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	1 cut(s)	457
AluI	AGCT	1 cut(s)	457
Alw26I	GTCTC	3 cut(s)	9, 219, 304
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	3 cut(s)	179, 266, 409
AspA2I	CCTAGG	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	336, 448
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	2 cut(s)	183, 304
AvrII	CCTAGG	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	411
BauI	CACGAG	1 cut(s)	8
BceAI	ACGGC	3 cut(s)	224, 230, 383
BcnI	CCSGG	2 cut(s)	183, 304
BcoDI	GTCTC	3 cut(s)	9, 219, 304
BfaI	CTAG	2 cut(s)	296, 419
BglI	GCCNNNNNGGC	1 cut(s)	404
BisI	GCNGC	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	183, 304
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	183, 304
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	3 cut(s)	27, 36, 45
BmuI	ACTGGG	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	183, 304
BsaJI	CCNNGG	5 cut(s)	182, 196, 261, 399, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	5 cut(s)	182, 196, 261, 399, 418
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	89, 326
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	3 cut(s)	215, 224, 282
Bsh1285I	CGRYCG	2 cut(s)	285, 480
BshFI	GGCC	3 cut(s)	181, 268, 411
BsiEI	CGRYCG	2 cut(s)	285, 480
BsiSI	CCGG	3 cut(s)	174, 182, 303
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	9, 219, 304
BsnI	GGCC	3 cut(s)	181, 268, 411
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	3 cut(s)	41, 285, 485
BspANI	GGCC	3 cut(s)	181, 268, 411
BspCNI	CTCAG	2 cut(s)	90, 325
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	182, 196, 261, 399, 418
BssMI	GATC	1 cut(s)	481
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	4 cut(s)	179, 409, 459, 463
BstDEI	CTNAG	2 cut(s)	98, 312
BstDSI	CCRYGG	2 cut(s)	261, 399
BstHHI	GCGC	2 cut(s)	336, 448
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	3 cut(s)	9, 219, 304
BstMBI	GATC	1 cut(s)	481
BstMCI	CGRYCG	2 cut(s)	285, 480
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 46, 55, 99, 404, 413, 454, 467
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	181, 302
BsuRI	GGCC	3 cut(s)	181, 268, 411
BtgI	CCRYGG	2 cut(s)	261, 399
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	179, 409, 459, 463
CfoI	GCGC	2 cut(s)	336, 448
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	4 cut(s)	14, 30, 66, 205
CviAII	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
CviQI	GTAC	4 cut(s)	14, 30, 66, 205
DdeI	CTNAG	2 cut(s)	98, 312
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	2 cut(s)	179, 409
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	7 cut(s)	124, 130, 191, 205, 361, 373, 416
FatI	CATG	7 cut(s)	120, 126, 187, 201, 357, 369, 412
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	296, 419
FspI	TGCGCA	1 cut(s)	335
GlaI	GCGC	2 cut(s)	335, 447
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	181, 268, 411
HapII	CCGG	3 cut(s)	174, 182, 303
HhaI	GCGC	2 cut(s)	336, 448
Hin1II	CATG	7 cut(s)	124, 130, 191, 205, 361, 373, 416
Hin6I	GCGC	2 cut(s)	334, 446
HinP1I	GCGC	2 cut(s)	334, 446
HinfI	GANTC	3 cut(s)	253, 387, 473
HpaII	CCGG	3 cut(s)	174, 182, 303
Hpy166II	GTNNAC	2 cut(s)	16, 309
Hpy188I	TCNGA	2 cut(s)	112, 315
Hpy188III	TCNNGA	2 cut(s)	8, 250
Hpy8I	GTNNAC	2 cut(s)	16, 309
Hpy99I	CGWCG	2 cut(s)	245, 251
HpyAV	CCTTC	2 cut(s)	17, 385
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	156, 207
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 46, 55, 99, 404, 413, 454, 467
HpyF3I	CTNAG	2 cut(s)	98, 312
HpySE526I	ACGT	2 cut(s)	156, 207
Hsp92II	CATG	7 cut(s)	124, 130, 191, 205, 361, 373, 416
HspAI	GCGC	2 cut(s)	334, 446
Kzo9I	GATC	1 cut(s)	481
LweI	GCATC	3 cut(s)	27, 36, 45
MaeI	CTAG	2 cut(s)	296, 419
MaeII	ACGT	2 cut(s)	156, 207
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	483
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	1 cut(s)	481
MboII	GAAGA	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	411
MluNI	TGGCCA	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	9 cut(s)	4, 149, 206, 233, 236, 242, 245, 303, 401
Mox20I	TGGCCA	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	2 cut(s)	125, 398
Msp20I	TGGCCA	1 cut(s)	411
MspI	CCGG	3 cut(s)	174, 182, 303
MspR9I	CCNGG	2 cut(s)	183, 304
MwoI	GCNNNNNNNGC	8 cut(s)	40, 46, 55, 99, 404, 413, 454, 467
NciI	CCSGG	2 cut(s)	183, 304
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	7 cut(s)	124, 130, 191, 205, 361, 373, 416
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	177
NsbI	TGCGCA	1 cut(s)	335
NspI	RCATGY	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 204, 243
PfeI	GAWTC	2 cut(s)	253, 387
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Psp1406I	AACGTT	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	4 cut(s)	15, 31, 67, 206
RsaNI	GTAC	4 cut(s)	14, 30, 66, 205
RseI	CAYNNNNRTG	2 cut(s)	125, 398
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	183, 304
SetI	ASST	9 cut(s)	15, 28, 99, 159, 198, 210, 424, 441, 459
SfaNI	GCATC	3 cut(s)	27, 36, 45
SmiMI	CAYNNNNRTG	2 cut(s)	125, 398
SsiI	CCGC	3 cut(s)	41, 285, 485
SspMI	CTAG	2 cut(s)	296, 419
StyD4I	CCNGG	2 cut(s)	181, 302
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	159, 210
TaqI	TCGA	2 cut(s)	249, 476
TaqII	GACCGA	1 cut(s)	494
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	253, 387
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	36, 143
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	418
XspI	CTAG	2 cut(s)	296, 419
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.