Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Forward (+)

31876801 .. 31877211

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1250000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCTCCTCCGCCCAAGGGCGACCTGACGAACACAACTTATGGTACCATGATGATGAGCAGCAGCCTCACATGGGGCAAAGATGTCATCATCCTCTTCCCCAAGTGGCCTAACAACAACCTCAGCATGTACGTCTTGGCTCTCTTCTTGATCTTCCTCCTCGCTGTCGCCGTCGAGGTATTGTCCGTTTTGCCCAAACACAGACCGGCAGCCAAACCCTACCTATCCCTCCTCGGTCAGACCGGCGTCCACAGCTTTCGTACCGGTTTGGCTTACCTGGTCATGCTCTCTGTCATGTCATTCAATATCGGAATCCTCATCGCCGCCGTGGCCGGCCATGCGCTAGGTTTCTTCATCGTTAAGGTTCGTGATCATGGCCAACACCCCGACTCGCCCGAGCCCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

137

Amino Acids

14.83

Weight (kDa)

9.57

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	74 - 119	1.2e-09	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	44
AciI	CCGC	2 cut(s)	11, 324
AcoI	YGGCCR	3 cut(s)	330, 334, 376
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	3 cut(s)	46, 131, 262
AfiI	CCNNNNNNNGG	2 cut(s)	17, 73
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	107, 330, 334, 376
ApeKI	GCWGC	3 cut(s)	60, 63, 209
AsiGI	ACCGGT	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	72, 75, 221
BceAI	ACGGC	2 cut(s)	155, 311
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	344
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	4 cut(s)	61, 64, 210, 324
BlsI	GCNGC	4 cut(s)	62, 65, 211, 325
Bme1390I	CCNGG	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	278
BoxI	GACNNNNGTC	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	15, 232, 327
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 73
Bse118I	RCCGGY	4 cut(s)	205, 242, 263, 332
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	15, 232, 327
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	17, 73
BseMII	CTCAG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	149, 221
BseXI	GCAGC	3 cut(s)	72, 75, 221
BshFI	GGCC	4 cut(s)	109, 332, 336, 378
BshNI	GGYRCC	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	4 cut(s)	206, 243, 264, 333
BslI	CCNNNNNNNGG	2 cut(s)	17, 73
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	109, 332, 336, 378
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	150, 370
BspACI	CCGC	2 cut(s)	11, 324
BspANI	GGCC	4 cut(s)	109, 332, 336, 378
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	44
BsrFI	RCCGGY	4 cut(s)	205, 242, 263, 332
BssAI	RCCGGY	4 cut(s)	205, 242, 263, 332
BssECI	CCNNGG	3 cut(s)	15, 232, 327
BssMI	GATC	2 cut(s)	150, 370
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	101, 149
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	153, 373
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	150, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 329, 338
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	130
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	72, 75, 221
BsuRI	GGCC	4 cut(s)	109, 332, 336, 378
BtgI	CCRYGG	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	4 cut(s)	205, 242, 263, 332
CseI	GACGC	1 cut(s)	235
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	45, 130, 261
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	7 cut(s)	49, 72, 127, 283, 295, 338, 374
CviQI	GTAC	3 cut(s)	45, 130, 261
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	152, 372
DpnII	GATC	2 cut(s)	150, 370
EaeI	YGGCCR	3 cut(s)	330, 334, 376
Eam1104I	CTCTTC	2 cut(s)	101, 149
EarI	CTCTTC	2 cut(s)	101, 149
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	7 cut(s)	52, 75, 130, 286, 298, 341, 377
FaiI	YATR	8 cut(s)	42, 50, 73, 128, 284, 296, 339, 375
FatI	CATG	7 cut(s)	48, 71, 126, 282, 294, 337, 373
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	61, 64, 210, 324
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	402
FseI	GGCCGGCC	1 cut(s)	336
Fsp4HI	GCNGC	4 cut(s)	61, 64, 210, 324
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	4 cut(s)	61, 64, 210, 324
HaeIII	GGCC	4 cut(s)	109, 332, 336, 378
HapII	CCGG	4 cut(s)	206, 243, 264, 333
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	7 cut(s)	52, 75, 130, 286, 298, 341, 377
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	312, 389
HpaII	CCGG	4 cut(s)	206, 243, 264, 333
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	240, 311
Hpy188III	TCNNGA	2 cut(s)	148, 368
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 329, 338
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	7 cut(s)	52, 75, 130, 286, 298, 341, 377
HspAI	GCGC	1 cut(s)	341
KpnI	GGTACC	1 cut(s)	48
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	150, 370
LpnPI	CCDG	7 cut(s)	38, 219, 256, 263, 277, 290, 346
Lsp1109I	GCAGC	3 cut(s)	72, 75, 221
MabI	ACCWGGT	1 cut(s)	276
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	132
MalI	GATC	2 cut(s)	152, 372
MboI	GATC	2 cut(s)	150, 370
MboII	GAAGA	4 cut(s)	88, 136, 145, 343
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	378
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	383
Mox20I	TGGCCA	1 cut(s)	378
MroNI	GCCGGC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	4 cut(s)	206, 243, 264, 333
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	252, 329, 338
NaeI	GCCGGC	1 cut(s)	334
NdeII	GATC	2 cut(s)	150, 370
NgoMIV	GCCGGC	1 cut(s)	332
NlaIII	CATG	7 cut(s)	52, 75, 130, 286, 298, 341, 377
NlaIV	GGNNCC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	312
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	4 cut(s)	62, 65, 211, 325
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	46
RigI	GGCCGGCC	1 cut(s)	336
RsaI	GTAC	3 cut(s)	46, 131, 262
RsaNI	GTAC	3 cut(s)	45, 130, 261
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	4 cut(s)	61, 64, 210, 324
Sau3AI	GATC	2 cut(s)	150, 370
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	9 cut(s)	27, 123, 135, 180, 225, 257, 279, 349, 366
SexAI	ACCWGGT	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	53
SsiI	CCGC	2 cut(s)	11, 324
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	224
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseI	GCWGC	3 cut(s)	60, 63, 209
TspDTI	ATGAA	1 cut(s)	343
TspGWI	ACGGA	1 cut(s)	175
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.