Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Reverse (-)

23631580 .. 23632008

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1155800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGACGACATGCCAAATATGTCTCCTCCGCCCAAGGGCGACCTGACGAACACAACTTATGGTACCATGATGATGAGCAGCGGCCTCACATGGGGCAAAGATGTCATCATCCTCTTCCCCAAGTGGCCTGACAACAACCTCGGCATGTACGTCTTGGCTCTCTTCTTCATCTTCCTCCTCGCTGTCGCGGTCGAGGTATTGTCCGTTTTGCCCAAACACAGACCGGCCGCCAAACCCTACCTATCCCTCCTCGGTCAGACAGGCGTCCACACCTTTCGTACCGGTTTGGCTTACCTGGTCATGCTCTCTGTCATGTCATTCAATATTGGAATCCTCATCGCCGCCGTGGCCGGCCATGCACTAGGTTTCTTCATCGTTAAGGTTCGTGATCATGGCCAACACCCCGACTCGCCCGAGCCCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

143

Amino Acids

15.53

Weight (kDa)

8.06

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	80 - 125	4.1e-10	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	1 cut(s)	188
AciI	CCGC	5 cut(s)	29, 81, 188, 228, 342
AcoI	YGGCCR	4 cut(s)	225, 348, 352, 394
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	3 cut(s)	64, 149, 280
AfiI	CCNNNNNNNGG	2 cut(s)	35, 91
AgeI	ACCGGT	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	6 cut(s)	82, 125, 225, 348, 352, 394
ApeKI	GCWGC	1 cut(s)	78
AsiGI	ACCGGT	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	4 cut(s)	79, 82, 228, 342
BlsI	GCNGC	4 cut(s)	80, 83, 229, 343
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	296
BoxI	GACNNNNGTC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	33, 139, 250, 345
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 91
Bse118I	RCCGGY	3 cut(s)	223, 281, 350
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	4 cut(s)	33, 139, 250, 345
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	35, 91
BseRI	GAGGAG	3 cut(s)	15, 167, 239
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	2 cut(s)	192, 228
BshFI	GGCC	6 cut(s)	84, 127, 227, 350, 354, 396
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	281
BsiEI	CGRYCG	2 cut(s)	192, 228
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	224, 282, 351
BslI	CCNNNNNNNGG	2 cut(s)	35, 91
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	6 cut(s)	84, 127, 227, 350, 354, 396
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	5 cut(s)	29, 81, 188, 228, 342
BspANI	GGCC	6 cut(s)	84, 127, 227, 350, 354, 396
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	3 cut(s)	223, 281, 350
BssAI	RCCGGY	3 cut(s)	223, 281, 350
BssECI	CCNNGG	4 cut(s)	33, 139, 250, 345
BssMI	GATC	1 cut(s)	388
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	119, 167
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	388
BstMCI	CGRYCG	2 cut(s)	192, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 356
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	2 cut(s)	13, 148
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	90
BstZI	CGGCCG	1 cut(s)	225
BsuRI	GGCC	6 cut(s)	84, 127, 227, 350, 354, 396
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	352
Cfr10I	RCCGGY	3 cut(s)	223, 281, 350
CseI	GACGC	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	63, 148, 279
CspAI	ACCGGT	1 cut(s)	281
CviAII	CATG	8 cut(s)	10, 67, 90, 145, 301, 313, 356, 392
CviJI	RGCY	9 cut(s)	84, 127, 158, 227, 290, 350, 354, 396, 418
CviKI_1	RGCY	9 cut(s)	84, 127, 158, 227, 290, 350, 354, 396, 418
CviQI	GTAC	3 cut(s)	63, 148, 279
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	4 cut(s)	225, 348, 352, 394
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	119, 167
EarI	CTCTTC	2 cut(s)	119, 167
EciI	GGCGGA	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	420
Eco52I	CGGCCG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	8 cut(s)	13, 70, 93, 148, 304, 316, 359, 395
FatI	CATG	8 cut(s)	9, 66, 89, 144, 300, 312, 355, 391
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	79, 82, 228, 342
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	420
FseI	GGCCGGCC	1 cut(s)	354
Fsp4HI	GCNGC	4 cut(s)	79, 82, 228, 342
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	4 cut(s)	79, 82, 228, 342
HaeIII	GGCC	6 cut(s)	84, 127, 227, 350, 354, 396
HapII	CCGG	3 cut(s)	224, 282, 351
HgaI	GACGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	8 cut(s)	13, 70, 93, 148, 304, 316, 359, 395
HinfI	GANTC	2 cut(s)	330, 407
HpaII	CCGG	3 cut(s)	224, 282, 351
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 356
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	8 cut(s)	13, 70, 93, 148, 304, 316, 359, 395
KpnI	GGTACC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	8 cut(s)	56, 141, 237, 246, 281, 295, 308, 364
Lsp1109I	GCAGC	1 cut(s)	90
MabI	ACCWGGT	1 cut(s)	294
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	106, 154, 157, 163, 361
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	396
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	401
Mox20I	TGGCCA	1 cut(s)	396
MroNI	GCCGGC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	3 cut(s)	224, 282, 351
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	347, 356
NaeI	GCCGGC	1 cut(s)	352
NdeII	GATC	1 cut(s)	388
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	8 cut(s)	13, 70, 93, 148, 304, 316, 359, 395
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	120
NspI	RCATGY	2 cut(s)	13, 148
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	330
PinAI	ACCGGT	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	80, 83, 229, 343
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PshAI	GACNNNNGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	64
RigI	GGCCGGCC	1 cut(s)	354
RsaI	GTAC	3 cut(s)	64, 149, 280
RsaNI	GTAC	3 cut(s)	63, 148, 279
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	79, 82, 228, 342
Sau3AI	GATC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	9 cut(s)	45, 141, 153, 198, 243, 275, 297, 367, 384
SexAI	ACCWGGT	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	71
SsiI	CCGC	5 cut(s)	29, 81, 188, 228, 342
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	242
TauI	GCSGC	3 cut(s)	84, 230, 344
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	157, 361
TspGWI	ACGGA	1 cut(s)	193
XceI	RCATGY	2 cut(s)	13, 148
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.