Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Forward (+)

2416791 .. 2417439

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1019100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCTAATATGTCTCCTCCGCCCAAGGGCGACCTGACGAACACAACTTATGGTACCATGATGATAAGCAGCGGCCTCACATGGGGTAAAGATGTCATCGTCCTCTTCCTCAAGTGGCCTGACAACAACCTCGGTATGTACGTCTTGGCTCTCTTCTTCACTTTCCTCCTCGTTGTCGCGATCGAGGTATTGTCCGTTTTGCCCAAACATAGACTGGCAACCAAACCCTACCTATCCCTCATCGGTCAAACCCGCGTCCACACCTTTCATACCGGTTTGGCTTACCTGGTCATGCTCCCTATCATGTCATTCAATATTGGAATCCTCATCGCCGCCGTGGCCGGCCATGCACTAGGTTTCTTCATCGTTAAGGAGTGTTTACGCTGGTTCGAAGTTGTCACTCCCGTTAAGGATCAAGGCCATTGTGGTAGTTGCTGGACATTTTTAATTGTTGTAGCTGTTGCGGACGTCGATGCGGCGGTGGTGCTTTCTTTTGCGACGAGCAGCGTTGGGCTCAGATTGAGGATCCATTCGGCATTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

182

Amino Acids

19.89

Weight (kDa)

8.86

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	81 - 122	5.2e-09	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	471
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	2 cut(s)	179, 255
AciI	CCGC	7 cut(s)	20, 72, 253, 333, 464, 476, 479
AclWI	GGATC	3 cut(s)	420, 520, 533
AcoI	YGGCCR	2 cut(s)	339, 343
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	55, 140
AfiI	CCNNNNNNNGG	2 cut(s)	26, 82
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	420, 520, 533
AoxI	GGCC	5 cut(s)	73, 116, 339, 343, 418
ApeKI	GCWGC	2 cut(s)	69, 504
AsiGI	ACCGGT	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	390
BamHI	GGATCC	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	81, 516
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	353, 544
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	5 cut(s)	70, 73, 333, 477, 505
BlsI	GCNGC	5 cut(s)	71, 74, 334, 478, 506
Bme1390I	CCNGG	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	55, 527
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	463
Bpu14I	TTCGAA	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	24, 130, 336
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 82
Bse118I	RCCGGY	2 cut(s)	272, 341
Bse1I	ACTGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	3 cut(s)	24, 130, 336
BseLI	CCNNNNNNNGG	2 cut(s)	26, 82
BseMII	CTCAG	1 cut(s)	529
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	2 cut(s)	6, 158
BseXI	GCAGC	2 cut(s)	81, 516
Bsh1236I	CGCG	2 cut(s)	179, 255
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	5 cut(s)	75, 118, 341, 345, 420
BshNI	GGYRCC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	273, 342
BslI	CCNNNNNNNGG	2 cut(s)	26, 82
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	75, 118, 341, 345, 420
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	180, 412, 525
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	7 cut(s)	20, 72, 253, 333, 464, 476, 479
BspANI	GGCC	5 cut(s)	75, 118, 341, 345, 420
BspCNI	CTCAG	1 cut(s)	528
BspFNI	CGCG	2 cut(s)	179, 255
BspLI	GGNNCC	2 cut(s)	55, 527
BspPI	GGATC	3 cut(s)	420, 520, 533
BspT104I	TTCGAA	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	2 cut(s)	272, 341
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	2 cut(s)	272, 341
BssECI	CCNNGG	3 cut(s)	24, 130, 336
BssMI	GATC	3 cut(s)	180, 412, 525
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	287
Bst6I	CTCTTC	2 cut(s)	110, 158
BstACI	GRCGYC	1 cut(s)	468
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	515
BstDSI	CCRYGG	1 cut(s)	336
BstFNI	CGCG	2 cut(s)	179, 255
BstKTI	GATC	3 cut(s)	183, 415, 528
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	180, 412, 525
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 347
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstUI	CGCG	2 cut(s)	179, 255
BstV1I	GCAGC	2 cut(s)	81, 516
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BsuRI	GGCC	5 cut(s)	75, 118, 341, 345, 420
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	313
BtuMI	TCGCGA	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	343
Cfr10I	RCCGGY	2 cut(s)	272, 341
CseI	GACGC	1 cut(s)	244
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	54, 139
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	5 cut(s)	58, 81, 292, 304, 347
CviJI	RGCY	9 cut(s)	75, 118, 149, 281, 341, 345, 420, 458, 514
CviKI_1	RGCY	9 cut(s)	75, 118, 149, 281, 341, 345, 420, 458, 514
CviQI	GTAC	2 cut(s)	54, 139
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	3 cut(s)	182, 414, 527
DpnII	GATC	3 cut(s)	180, 412, 525
EaeI	YGGCCR	2 cut(s)	339, 343
Eam1104I	CTCTTC	2 cut(s)	110, 158
EarI	CTCTTC	2 cut(s)	110, 158
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	5 cut(s)	61, 84, 295, 307, 350
FatI	CATG	5 cut(s)	57, 80, 291, 303, 346
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	5 cut(s)	70, 73, 333, 477, 505
FriOI	GRGCYC	1 cut(s)	516
FseI	GGCCGGCC	1 cut(s)	345
Fsp4HI	GCNGC	5 cut(s)	70, 73, 333, 477, 505
FspBI	CTAG	2 cut(s)	353, 544
GluI	GCNGC	5 cut(s)	70, 73, 333, 477, 505
HaeIII	GGCC	5 cut(s)	75, 118, 341, 345, 420
HapII	CCGG	2 cut(s)	273, 342
HgaI	GACGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	5 cut(s)	61, 84, 295, 307, 350
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	2 cut(s)	273, 342
Hpy166II	GTNNAC	2 cut(s)	259, 380
Hpy188I	TCNGA	1 cut(s)	518
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	259, 380
Hpy99I	CGWCG	2 cut(s)	473, 502
HpyCH4IV	ACGT	2 cut(s)	141, 468
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 347
HpyF3I	CTNAG	1 cut(s)	515
HpySE526I	ACGT	2 cut(s)	141, 468
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	5 cut(s)	61, 84, 295, 307, 350
KpnI	GGTACC	1 cut(s)	57
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	180, 412, 525
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	9 cut(s)	47, 132, 200, 272, 286, 299, 355, 370, 421
Lsp1109I	GCAGC	2 cut(s)	81, 516
LweI	GCATC	1 cut(s)	463
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	2 cut(s)	353, 544
MaeII	ACGT	2 cut(s)	141, 468
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	182, 414, 527
MboI	GATC	3 cut(s)	180, 412, 525
MboII	GAAGA	4 cut(s)	97, 145, 148, 352
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	1 cut(s)	447
MroNI	GCCGGC	1 cut(s)	341
MseI	TTAA	3 cut(s)	369, 408, 446
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	2 cut(s)	273, 342
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	179, 255
MwoI	GCNNNNNNNGC	2 cut(s)	338, 347
NaeI	GCCGGC	1 cut(s)	343
NdeII	GATC	3 cut(s)	180, 412, 525
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	5 cut(s)	61, 84, 295, 307, 350
NlaIV	GGNNCC	2 cut(s)	55, 527
NmuCI	GTSAC	1 cut(s)	397
NruI	TCGCGA	1 cut(s)	179
NspV	TTCGAA	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	5 cut(s)	71, 74, 334, 478, 506
Ple19I	CGATCG	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	55, 527
PsuI	RGATCY	1 cut(s)	525
PvuI	CGATCG	1 cut(s)	183
RigI	GGCCGGCC	1 cut(s)	345
RruI	TCGCGA	1 cut(s)	179
RsaI	GTAC	2 cut(s)	55, 140
RsaNI	GTAC	2 cut(s)	54, 139
SaqAI	TTAA	3 cut(s)	369, 408, 446
SatI	GCNGC	5 cut(s)	70, 73, 333, 477, 505
Sau3AI	GATC	3 cut(s)	180, 412, 525
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	516
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	7 cut(s)	20, 72, 253, 333, 464, 476, 479
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	2 cut(s)	353, 544
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	24
TaiI	ACGT	2 cut(s)	144, 471
TaqI	TCGA	3 cut(s)	183, 390, 471
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	447
TauI	GCSGC	3 cut(s)	75, 335, 479
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	369, 408, 446
Tru9I	TTAA	3 cut(s)	369, 408, 446
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	69, 504
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	257, 352
TspGWI	ACGGA	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	2 cut(s)	353, 544
ZraI	GACGTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.