Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Reverse (-)

38247301 .. 38247795

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCTCACGAGGTACACGATGAAGGTGGTATGCTGATGCCGCCGATGCCACCGATGCCGATGACTCCACCGCCAACAAAGCCTACGGGCGACCTGAGCAACACATCTGATTATTCCATGATCATGAACAACAGCCTCCACTGGGGCAAAAATGTTACCATACTCTTTTCCGGCTGGCCGGGGCATGACCACCTCGGCATGTACGTCTTGTCTCTCTCCTTCCTCTTCCTCCTCGCCGTCGCCGTCGAGATTCTTTCCGTGGGGCCTACCCTGAAGCCTACCGCCACTCCTCTAGTCTCCGGAGTCACTCAGACGGGTATTTATGCACTGCGCACCGTTTTGGCTTACTTGGTCATGCTATCTGTCATGTCCTTCAATGTTGGAATCCTCATAGCCGTGGTGGCTGGCCATGCCCTAGGTTTCTTTGTCGTCAAGGTTCGTGCGCTTAACCAGCTCGCCAGCCAAGCCGACTCGACCGATCCGCTCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

165

Amino Acids

17.56

Weight (kDa)

6.26

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	98 - 143	8.4e-11	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	484
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	4 cut(s)	41, 71, 282, 482
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	2 cut(s)	176, 406
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	15, 203
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw26I	GTCTC	3 cut(s)	9, 216, 301
AlwI	GGATC	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	3 cut(s)	176, 263, 406
AspA2I	CCTAGG	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	333, 445
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	180
AvrII	CCTAGG	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	408
BauI	CACGAG	1 cut(s)	8
BceAI	ACGGC	3 cut(s)	221, 227, 380
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	3 cut(s)	9, 216, 301
BfaI	CTAG	2 cut(s)	293, 416
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	27, 36, 45
BmuI	ACTGGG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	5 cut(s)	179, 193, 258, 396, 415
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	299
BseDI	CCNNGG	5 cut(s)	179, 193, 258, 396, 415
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	86, 323
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	221, 279
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	178, 265, 408
BsiEI	CGRYCG	1 cut(s)	477
BsiSI	CCGG	3 cut(s)	171, 179, 300
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	3 cut(s)	9, 216, 301
BsnI	GGCC	3 cut(s)	178, 265, 408
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	120, 478
BspACI	CCGC	4 cut(s)	41, 71, 282, 482
BspANI	GGCC	3 cut(s)	178, 265, 408
BspCNI	CTCAG	2 cut(s)	87, 322
BspEI	TCCGGA	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	5 cut(s)	179, 193, 258, 396, 415
BssMI	GATC	2 cut(s)	120, 478
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	176, 406, 456, 460
BstDEI	CTNAG	2 cut(s)	95, 309
BstDSI	CCRYGG	2 cut(s)	258, 396
BstHHI	GCGC	2 cut(s)	333, 445
BstKTI	GATC	2 cut(s)	123, 481
BstMAI	GTCTC	3 cut(s)	9, 216, 301
BstMBI	GATC	2 cut(s)	120, 478
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	9 cut(s)	40, 46, 55, 79, 96, 401, 410, 451, 464
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	178, 265, 408
BtgI	CCRYGG	2 cut(s)	258, 396
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	139, 326
Cac8I	GCNNGC	4 cut(s)	176, 406, 456, 460
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	2 cut(s)	333, 445
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	14, 202
CviAII	CATG	7 cut(s)	118, 124, 185, 199, 355, 367, 410
CviQI	GTAC	2 cut(s)	14, 202
DdeI	CTNAG	2 cut(s)	95, 309
DpnI	GATC	2 cut(s)	122, 480
DpnII	GATC	2 cut(s)	120, 478
EaeI	YGGCCR	2 cut(s)	176, 406
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
FatI	CATG	7 cut(s)	117, 123, 184, 198, 354, 366, 409
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	293, 416
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	332, 444
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	178, 265, 408
HapII	CCGG	3 cut(s)	171, 179, 300
HhaI	GCGC	2 cut(s)	333, 445
Hin1II	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
Hin6I	GCGC	2 cut(s)	331, 443
HinP1I	GCGC	2 cut(s)	331, 443
HinfI	GANTC	5 cut(s)	64, 250, 303, 384, 470
HpaII	CCGG	3 cut(s)	171, 179, 300
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	109, 312
Hpy188III	TCNNGA	4 cut(s)	8, 124, 247, 300
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	242, 248
HpyAV	CCTTC	3 cut(s)	17, 229, 382
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	9 cut(s)	40, 46, 55, 79, 96, 401, 410, 451, 464
HpyF3I	CTNAG	2 cut(s)	95, 309
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
HspAI	GCGC	2 cut(s)	331, 443
Kpn2I	TCCGGA	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	120, 478
LweI	GCATC	3 cut(s)	27, 36, 45
MaeI	CTAG	2 cut(s)	293, 416
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	154, 304
MalI	GATC	2 cut(s)	122, 480
MbiI	CCGCTC	1 cut(s)	484
MboI	GATC	2 cut(s)	120, 478
MboII	GAAGA	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	408
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	3 cut(s)	58, 312, 464
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	4, 146, 203, 233, 239, 242, 300, 398
Mox20I	TGGCCA	1 cut(s)	408
MroI	TCCGGA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	2 cut(s)	122, 395
Msp20I	TGGCCA	1 cut(s)	408
MspI	CCGG	3 cut(s)	171, 179, 300
MspR9I	CCNGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	9 cut(s)	40, 46, 55, 79, 96, 401, 410, 451, 464
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	120, 478
NlaIII	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 201, 240
PfeI	GAWTC	2 cut(s)	250, 384
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	3 cut(s)	58, 311, 464
PpsI	GAGTC	3 cut(s)	58, 311, 464
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	15, 203
RsaNI	GTAC	2 cut(s)	14, 202
RseI	CAYNNNNRTG	2 cut(s)	122, 395
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	120, 478
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	58, 312, 464
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	8 cut(s)	15, 28, 96, 195, 207, 421, 438, 456
SfaNI	GCATC	3 cut(s)	27, 36, 45
SmiMI	CAYNNNNRTG	2 cut(s)	122, 395
SsiI	CCGC	4 cut(s)	41, 71, 282, 482
SspMI	CTAG	2 cut(s)	293, 416
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	246, 473
TaqII	GACCGA	1 cut(s)	491
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	250, 384
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	146, 333
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	36, 140
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	2 cut(s)	146, 333
XceI	RCATGY	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	293, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.