Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Forward (+)

5767471 .. 5770724

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0072500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGACGAGGAATCGGACTTTGCTTTACAGAAAGTACCGGGATGCGTTGAAGACCGTCCGCTCTCCGGTCGGCTCCTCCGCCTCGGCGTCCACCAGCTCCGGCGCCGGAGGTCCCGTCATCGAATTGTCTTCGCTTATGCATAAGAATCGATCCTATGCTCCGCTCAGTACTGAAGATCCCGGTAATTCAAGCAAGGGTGCAATTACTGTTGGTCTACCGCCAGCATGGGTGGATGTATCTGAAGAAATAGCAGTAAATGTGCAGCGGGCACGGGTAAAAATGTCTGAGCTGTCCAAGGCTCATGCAAAGGCTTTAATGCCATCTTTTGGAGATGGTAAAGAAGATCAACGCTTGATTGAGAGTCTTACACAAGAGATTACTGGATTAATAACGAAATCTCAGAAGAGACTACAAAGACTTGCTGCAGCTGGGCCTTCAGAAGATTCAAATGTTAGAAAGAACGTGCAGGTATCTCTTGCTACGGACCTTCAGAGCCTCTCTAATGAGCTCCGTAAGAAACAATCAAATTATTTGAAACGCCTCAAACAGCAAAAAGAGGGTCAAGATGGGGACGACCTTGAGATGAACCTAAATGGAAGTAGATCAAGAATGGATGGTGATGATTTGGATGAAATAATGTTTCATGAACGTGAGACGGCCCAGATTAAGAAACATGAAGCATTCACAGCAGAAAGGGAAAGAGAGATTCATCAGGTTGTGGAATCTGTGAATGAGCTTGCCCAGATTATGAAGGATCTGTCAGTTCTAGTGATAGACCAGGGAACTATTGTTGATAGGATAGACTACAACATTCAGAATGTTGCAAGTACAGTTGAGGATGGCCTCAAGCAATTGCAAAAGGCCGAGAGAACACAGAAACAAGGAGGAATGGTGATGTGCGCTACAGTACTTGTAATCATGTGCGCTGTCATGTTGGTTCTCCTAGTCCTCAAGGAGATACTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

323

Amino Acids

35.74

Weight (kDa)

7.74

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	263 - 315	1.2e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	2 cut(s)	63, 166
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	5 cut(s)	61, 81, 164, 221, 268
AclWI	GGATC	3 cut(s)	147, 173, 765
AcuI	CTGAAG	4 cut(s)	195, 264, 423, 476
AcyI	GRCGYC	2 cut(s)	89, 105
AfaI	GTAC	4 cut(s)	38, 172, 832, 912
AfiI	CCNNNNNNNGG	2 cut(s)	67, 329
AgsI	TTSAA	4 cut(s)	52, 192, 450, 538
AjnI	CCWGG	1 cut(s)	780
AluBI	AGCT	5 cut(s)	99, 292, 431, 511, 739
AluI	AGCT	5 cut(s)	99, 292, 431, 511, 739
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	2 cut(s)	403, 650
AlwI	GGATC	3 cut(s)	147, 173, 765
AoxI	GGCC	4 cut(s)	434, 660, 844, 864
ApeKI	GCWGC	3 cut(s)	265, 425, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AseI	ATTAAT	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	107, 905, 929
AspS9I	GGNCC	4 cut(s)	113, 434, 487, 661
AsuC2I	CCSGG	2 cut(s)	41, 183
AsuHPI	GGTGA	2 cut(s)	632, 907
AvaII	GGWCC	2 cut(s)	113, 487
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	2 cut(s)	59, 123
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	277, 412, 440
BccI	CCATC	5 cut(s)	329, 331, 563, 611, 836
BceAI	ACGGC	1 cut(s)	675
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	782
BcnI	CCSGG	2 cut(s)	41, 183
BcoDI	GTCTC	2 cut(s)	403, 650
BfaI	CTAG	2 cut(s)	770, 947
BfmI	CTRYAG	2 cut(s)	426, 906
BfoI	RGCGCY	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	3 cut(s)	266, 426, 429
BlsI	GCNGC	3 cut(s)	267, 427, 430
BmcAI	AGTACT	2 cut(s)	172, 912
Bme1390I	CCNGG	3 cut(s)	41, 183, 782
Bme18I	GGWCC	2 cut(s)	113, 487
BmgT120I	GGNCC	4 cut(s)	113, 434, 487, 661
BmiI	GGNNCC	3 cut(s)	76, 106, 115
BmrFI	CCNGG	3 cut(s)	41, 183, 782
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	2 cut(s)	59, 123
BpuEI	CTTGAG	3 cut(s)	602, 833, 938
BpuMI	CCSGG	2 cut(s)	41, 183
Bsa29I	ATCGAT	1 cut(s)	151
BsaHI	GRCGYC	2 cut(s)	89, 105
BsaJI	CCNNGG	3 cut(s)	84, 297, 781
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 879, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 329
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	782
BseCI	ATCGAT	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	84, 297, 781
BseGI	GGATG	5 cut(s)	49, 241, 622, 637, 847
BseLI	CCNNNNNNNGG	2 cut(s)	67, 329
BseMII	CTCAG	3 cut(s)	181, 279, 416
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	277, 412, 440
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	2 cut(s)	284, 488
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	436, 662, 846, 866
BshNI	GGYRCC	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	5 cut(s)	40, 68, 102, 108, 183
BslFI	GGGAC	2 cut(s)	99, 587
BslI	CCNNNNNNNGG	2 cut(s)	67, 329
BsmAI	GTCTC	2 cut(s)	403, 650
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	99, 587
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	4 cut(s)	436, 662, 846, 866
Bsp1286I	GDGCHC	2 cut(s)	274, 513
Bsp143I	GATC	5 cut(s)	152, 178, 346, 605, 757
BspACI	CCGC	5 cut(s)	61, 81, 164, 221, 268
BspANI	GGCC	4 cut(s)	436, 662, 846, 866
BspCNI	CTCAG	3 cut(s)	180, 280, 415
BspDI	ATCGAT	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	76, 106, 115
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	147, 173, 765
BspT107I	GGYRCC	1 cut(s)	104
BsrBI	CCGCTC	2 cut(s)	63, 166
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	84, 297, 781
BssMI	GATC	5 cut(s)	152, 178, 346, 605, 757
BssNI	GRCGYC	2 cut(s)	89, 105
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	4 cut(s)	58, 211, 835, 910
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	2 cut(s)	89, 105
BstC8I	GCNNGC	3 cut(s)	225, 270, 741
BstDEI	CTNAG	3 cut(s)	167, 288, 402
BstF5I	GGATG	5 cut(s)	49, 241, 622, 637, 847
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	3 cut(s)	107, 905, 929
BstKTI	GATC	5 cut(s)	155, 181, 349, 608, 760
BstMAI	GTCTC	2 cut(s)	403, 650
BstMBI	GATC	5 cut(s)	152, 178, 346, 605, 757
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	1 cut(s)	782
BstSCI	CCNGG	3 cut(s)	39, 181, 780
BstSFI	CTRYAG	2 cut(s)	426, 906
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	3 cut(s)	277, 412, 440
BstV2I	GAAGAC	2 cut(s)	59, 123
BstX2I	RGATCY	2 cut(s)	178, 757
BstYI	RGATCY	2 cut(s)	178, 757
Bsu15I	ATCGAT	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	436, 662, 846, 866
BsuTUI	ATCGAT	1 cut(s)	151
BtsCI	GGATG	5 cut(s)	49, 241, 622, 637, 847
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	225, 270, 741
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	3 cut(s)	107, 905, 929
Cfr13I	GGNCC	4 cut(s)	113, 434, 487, 661
ClaI	ATCGAT	1 cut(s)	151
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	4 cut(s)	37, 171, 831, 911
CviAII	CATG	6 cut(s)	228, 305, 647, 677, 922, 934
CviQI	GTAC	4 cut(s)	37, 171, 831, 911
DdeI	CTNAG	3 cut(s)	167, 288, 402
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	5 cut(s)	154, 180, 348, 607, 759
DpnII	GATC	5 cut(s)	152, 178, 346, 605, 757
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	113, 487
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	4 cut(s)	195, 264, 423, 476
EcoICRI	GAGCTC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	780
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	513
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	6 cut(s)	231, 308, 650, 680, 925, 937
FaqI	GGGAC	2 cut(s)	99, 587
FatI	CATG	6 cut(s)	227, 304, 646, 676, 921, 933
FauI	CCCGC	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	266, 426, 429
FokI	GGATG	5 cut(s)	56, 248, 629, 644, 854
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	3 cut(s)	266, 426, 429
FspBI	CTAG	2 cut(s)	770, 947
GlaI	GCGC	3 cut(s)	106, 904, 928
GluI	GCNGC	3 cut(s)	266, 426, 429
GsaI	CCCAGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	4 cut(s)	436, 662, 846, 866
HapII	CCGG	5 cut(s)	40, 68, 102, 108, 183
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	3 cut(s)	107, 905, 929
Hin1I	GRCGYC	2 cut(s)	89, 105
Hin1II	CATG	6 cut(s)	231, 308, 650, 680, 925, 937
Hin6I	GCGC	3 cut(s)	105, 903, 927
HinP1I	GCGC	3 cut(s)	105, 903, 927
HinfI	GANTC	6 cut(s)	13, 148, 364, 446, 709, 725
HpaII	CCGG	5 cut(s)	40, 68, 102, 108, 183
HphI	GGTGA	2 cut(s)	632, 907
Hpy166II	GTNNAC	2 cut(s)	93, 218
Hpy188I	TCNGA	7 cut(s)	18, 244, 289, 405, 442, 495, 819
Hpy188III	TCNNGA	3 cut(s)	566, 609, 647
Hpy8I	GTNNAC	2 cut(s)	93, 218
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	447, 500, 748
HpyCH4III	ACNGT	4 cut(s)	58, 211, 835, 910
HpyCH4IV	ACGT	2 cut(s)	465, 652
HpyCH4V	TGCA	8 cut(s)	142, 203, 265, 308, 428, 469, 827, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	3 cut(s)	167, 288, 402
HpySE526I	ACGT	2 cut(s)	465, 652
Hsp92I	GRCGYC	2 cut(s)	89, 105
Hsp92II	CATG	6 cut(s)	231, 308, 650, 680, 925, 937
HspAI	GCGC	3 cut(s)	105, 903, 927
KasI	GGCGCC	1 cut(s)	104
Kzo9I	GATC	5 cut(s)	152, 178, 346, 605, 757
LmnI	GCTCC	4 cut(s)	80, 104, 166, 516
Lsp1109I	GCAGC	3 cut(s)	277, 412, 440
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	770, 947
MaeII	ACGT	2 cut(s)	465, 652
MalI	GATC	5 cut(s)	154, 180, 348, 607, 759
MbiI	CCGCTC	2 cut(s)	63, 166
MboI	GATC	5 cut(s)	152, 178, 346, 605, 757
MboII	GAAGA	7 cut(s)	64, 123, 188, 257, 356, 418, 455
MfeI	CAATTG	1 cut(s)	854
MflI	RGATCY	2 cut(s)	178, 757
MhlI	GDGCHC	2 cut(s)	274, 513
MluCI	AATT	5 cut(s)	125, 187, 204, 529, 854
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	373
Mph1103I	ATGCAT	1 cut(s)	144
MseI	TTAA	3 cut(s)	317, 389, 669
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	2 cut(s)	268, 431
MspI	CCGG	5 cut(s)	40, 68, 102, 108, 183
MspR9I	CCNGG	3 cut(s)	41, 183, 782
MunI	CAATTG	1 cut(s)	854
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	689
NarI	GGCGCC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	41, 183
NdeII	GATC	5 cut(s)	152, 178, 346, 605, 757
NlaIII	CATG	6 cut(s)	231, 308, 650, 680, 925, 937
NlaIV	GGNNCC	3 cut(s)	76, 106, 115
NmeAIII	GCCGAG	2 cut(s)	65, 892
NsiI	ATGCAT	1 cut(s)	144
PagI	TCATGA	1 cut(s)	646
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	5 cut(s)	13, 148, 446, 709, 725
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	267, 427, 430
PleI	GAGTC	1 cut(s)	372
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	113
PshBI	ATTAAT	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	780
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	780
PspN4I	GGNNCC	3 cut(s)	76, 106, 115
PspPI	GGNCC	4 cut(s)	113, 434, 487, 661
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	178, 757
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	4 cut(s)	38, 172, 832, 912
RsaNI	GTAC	4 cut(s)	37, 171, 831, 911
RseI	CAYNNNNRTG	1 cut(s)	651
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	317, 389, 669
SatI	GCNGC	3 cut(s)	266, 426, 429
Sau3AI	GATC	5 cut(s)	152, 178, 346, 605, 757
Sau96I	GGNCC	4 cut(s)	113, 434, 487, 661
ScaI	AGTACT	2 cut(s)	172, 912
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	41, 183, 782
SduI	GDGCHC	2 cut(s)	274, 513
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	426, 906
SfoI	GGCGCC	1 cut(s)	106
SinI	GGWCC	2 cut(s)	113, 487
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	3 cut(s)	581, 848, 953
SmoI	CTYRAG	3 cut(s)	581, 848, 953
Sse9I	AATT	5 cut(s)	125, 187, 204, 529, 854
SsiI	CCGC	5 cut(s)	61, 81, 164, 221, 268
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	770, 947
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	3 cut(s)	39, 181, 780
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	4 cut(s)	58, 211, 835, 910
TaiI	ACGT	2 cut(s)	468, 655
TaqI	TCGA	2 cut(s)	123, 151
TasI	AATT	5 cut(s)	125, 187, 204, 529, 854
TatI	WGTACW	3 cut(s)	170, 830, 910
TfiI	GAWTC	5 cut(s)	13, 148, 446, 709, 725
Tru1I	TTAA	3 cut(s)	317, 389, 669
Tru9I	TTAA	3 cut(s)	317, 389, 669
TseI	GCWGC	3 cut(s)	265, 425, 428
TspDTI	ATGAA	7 cut(s)	602, 635, 648, 663, 693, 701, 767
TspGWI	ACGGA	2 cut(s)	500, 503
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	113, 487
VspI	ATTAAT	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	217
XspI	CTAG	2 cut(s)	770, 947
ZrmI	AGTACT	2 cut(s)	172, 912
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.