Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014759

Physical Location & Seq

Genomic Coordinates Forward (+)

10682275 .. 10682763

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G011010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCTCACGAGGTACACGATGAAGGTGGTACGCTGATGCCGCCGATGCCGATGAGTACTCCACCGCCAACAAAGCCTACGGGCGACCTGAGCAACACATCTGATTATTCCATGAGCATGAACAACAGCCTCTACTGGGGCAAAAACGTTACCATACTCTTTTCCGGCTGGCCGGGGCATGACCACCTCGGCATGTACGTCTTGTCTCTCTCCTTCCTCTTCCTCCTGGCCGTCGCCGTCGAGATTCTTTCCGTGGGGCCTAACCTGAAGCCGACTGCCACTCCTCTAGTCTCCGGGGTCACTCAGACGGGTATTTATGCACTGCGCACCGTTTTGGCTTACTTGGTCATGCTATCTGTCATGTCCTTCAATGTTGGAATCCTCATAGCCGTGGTGGCTGGCCATGCCCTAGGTTTCTTTGTCGTCAAGGTTCGTGCGCTTAACCAGCTCGCCAGCCAAGCCGACTCGACCGATCCGCTCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0003006 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0007275 GO:0007276 GO:0008150 GO:0008324 GO:0009555 GO:0009987 GO:0015075 GO:0015318 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0035434 GO:0044703 GO:0046873 GO:0046915 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

162

Amino Acids

17.31

Weight (kDa)

6.15

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	96 - 141	9.7e-11	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014759)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12630
malus_domestica	MD04G1140400.v1.1 MD07G1250000.v1.1 MD10G1019100.v1.1 MD12G1155800.v1.1
prunus_persica	Prupe.6G265500_v2.0.a1
pyrus_communis	pycom04g12800 pycom12g14780
rosa_chinensis	RchiOBHm_Chr3g0464481
rosa_laevigata	RLG00000024693
rosa_multiflora	Rmu_sc0003074.1_g000007
rosa_roxburghii	Rroxscaffold_6G00415630
rosa_rugosa	Rorug03G0072500
rosa_samantha	Rh3BG134700 Rh3CG137200 Rh3DG136000
rosa_wichuraiana	Rw3G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	478
AciI	CCGC	3 cut(s)	41, 65, 476
AclI	AACGTT	1 cut(s)	147
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	3 cut(s)	170, 228, 400
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	4 cut(s)	15, 31, 58, 197
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	448
AluI	AGCT	1 cut(s)	448
Alw26I	GTCTC	3 cut(s)	9, 210, 295
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	4 cut(s)	170, 228, 257, 400
AspA2I	CCTAGG	1 cut(s)	409
AspLEI	GCGC	2 cut(s)	327, 439
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	2 cut(s)	174, 295
AvrII	CCTAGG	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	402
BauI	CACGAG	1 cut(s)	8
BceAI	ACGGC	3 cut(s)	215, 221, 374
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	2 cut(s)	174, 295
BcoDI	GTCTC	3 cut(s)	9, 210, 295
BfaI	CTAG	2 cut(s)	287, 410
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	174, 227, 295
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	3 cut(s)	174, 227, 295
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	27, 36
BmuI	ACTGGG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	2 cut(s)	174, 295
BsaJI	CCNNGG	6 cut(s)	173, 187, 252, 294, 390, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	6 cut(s)	173, 187, 252, 294, 390, 409
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	80, 317
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	172, 230, 259, 402
BsiEI	CGRYCG	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	165, 173, 294
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	3 cut(s)	9, 210, 295
BsnI	GGCC	4 cut(s)	172, 230, 259, 402
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	3 cut(s)	41, 65, 476
BspANI	GGCC	4 cut(s)	172, 230, 259, 402
BspCNI	CTCAG	2 cut(s)	81, 316
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	6 cut(s)	173, 187, 252, 294, 390, 409
BssMI	GATC	1 cut(s)	472
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	409
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	170, 400, 450, 454
BstDEI	CTNAG	2 cut(s)	89, 303
BstDSI	CCRYGG	2 cut(s)	252, 390
BstHHI	GCGC	2 cut(s)	327, 439
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	3 cut(s)	9, 210, 295
BstMBI	GATC	1 cut(s)	472
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 46, 73, 90, 395, 404, 445, 458
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	172, 225, 293
BsuRI	GGCC	4 cut(s)	172, 230, 259, 402
BtgI	CCRYGG	2 cut(s)	252, 390
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	4 cut(s)	170, 400, 450, 454
CfoI	GCGC	2 cut(s)	327, 439
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	4 cut(s)	14, 30, 57, 196
CviAII	CATG	7 cut(s)	112, 118, 179, 193, 349, 361, 404
CviQI	GTAC	4 cut(s)	14, 30, 57, 196
DdeI	CTNAG	2 cut(s)	89, 303
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	3 cut(s)	170, 228, 400
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	7 cut(s)	115, 121, 182, 196, 352, 364, 407
FatI	CATG	7 cut(s)	111, 117, 178, 192, 348, 360, 403
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	287, 410
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	2 cut(s)	326, 438
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	172, 230, 259, 402
HapII	CCGG	3 cut(s)	165, 173, 294
HhaI	GCGC	2 cut(s)	327, 439
Hin1II	CATG	7 cut(s)	115, 121, 182, 196, 352, 364, 407
Hin6I	GCGC	2 cut(s)	325, 437
HinP1I	GCGC	2 cut(s)	325, 437
HinfI	GANTC	3 cut(s)	244, 378, 464
HpaII	CCGG	3 cut(s)	165, 173, 294
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	103, 306
Hpy188III	TCNNGA	2 cut(s)	8, 241
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	236, 242
HpyAV	CCTTC	3 cut(s)	17, 223, 376
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	147, 198
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 46, 73, 90, 395, 404, 445, 458
HpyF3I	CTNAG	2 cut(s)	89, 303
HpySE526I	ACGT	2 cut(s)	147, 198
Hsp92II	CATG	7 cut(s)	115, 121, 182, 196, 352, 364, 407
HspAI	GCGC	2 cut(s)	325, 437
Kzo9I	GATC	1 cut(s)	472
LweI	GCATC	2 cut(s)	27, 36
MaeI	CTAG	2 cut(s)	287, 410
MaeII	ACGT	2 cut(s)	147, 198
MaeIII	GTNAC	2 cut(s)	148, 298
MalI	GATC	1 cut(s)	474
MbiI	CCGCTC	1 cut(s)	478
MboI	GATC	1 cut(s)	472
MboII	GAAGA	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	7 cut(s)	4, 140, 197, 227, 233, 294, 392
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	2 cut(s)	116, 389
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	3 cut(s)	165, 173, 294
MspR9I	CCNGG	3 cut(s)	174, 227, 295
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	8 cut(s)	40, 46, 73, 90, 395, 404, 445, 458
NciI	CCSGG	2 cut(s)	174, 295
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	7 cut(s)	115, 121, 182, 196, 352, 364, 407
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	326
NspI	RCATGY	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 195
PfeI	GAWTC	2 cut(s)	244, 378
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp1406I	AACGTT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	4 cut(s)	15, 31, 58, 197
RsaNI	GTAC	4 cut(s)	14, 30, 57, 196
RseI	CAYNNNNRTG	2 cut(s)	116, 389
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	257
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	3 cut(s)	174, 227, 295
SfaNI	GCATC	2 cut(s)	27, 36
SmiMI	CAYNNNNRTG	2 cut(s)	116, 389
SsiI	CCGC	3 cut(s)	41, 65, 476
SspMI	CTAG	2 cut(s)	287, 410
StyD4I	CCNGG	3 cut(s)	172, 225, 293
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	2 cut(s)	150, 201
TaqI	TCGA	2 cut(s)	240, 467
TaqII	GACCGA	1 cut(s)	485
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	244, 378
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	36, 134
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	327
XceI	RCATGY	1 cut(s)	196
XmaJI	CCTAGG	1 cut(s)	409
XspI	CTAG	2 cut(s)	287, 410
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.