FvH4_6g13420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010857
Physical Location & Seq
Forward (+)
8150754 .. 8153050
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13420.t4

Sequence Viewer

Length: 711 bp
ATGGAGATGGAAGCTGAATACAAACAAAGCCCAACTGAGATTGTCAGCTACCCTGTAATTGAAGTTGGAAAGACGATCAAGAAACGAAAATTGCAGGCTGAGCAATTGGGCTTGCCTACACCCAAGCATAAATGCTGGGACCTCAACTTTCCTTCAGATGGACCTGTCTCCATGTTTGATGAAATTCCTGTCCAAGTACAGAACATGGAGAGACACATAGTCAATGGAGGAATAGAGGGAGGAGTCCTCAATGACGGGTCTGGACTTGGATCAGGAAAAGGTAGCAATAGTTTTGCTGGAGATTATTGTGATTCTGCAATATCGGTTTATAGAGAAGTTGAACCAAACCCTGCATATGCAAAGAGCGTATGTGATAGGCCGTCCACTTCATCTGTGAATTGCAATGTCAATATTTTTAAAGACACCGACAGCAGTTTGGACAATGTGTCAGCTATGGAAGCAAATTATGGCGAAGCGGAACTAGAATTTGTGAATATGGAAGTGCATCAACCTATTCAGAACCTCGAAGAGCAGCTCCAAGAATATGGAGGCGAGGCAAATTACATCTGCTCCGAATATGGAGAGCACTTCATTGAGGAGTGTACAGATAAGGAAGTTGAAGATATTATCTACTCCAATTCTTTAAACCCTCATGCATATATACTTTCATCGGGAAGGTGGAGTGTAAATCAAGTTTTCATTGTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.14

Weight (kDa)

4.42

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37678 AT2G37678
fragaria_vesca FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica Prupe.6G257800_v2.0.a1
pyrus_communis pycom04g11950 pycom12g13890
rosa_chinensis RchiOBHm_Chr3g0466291
rosa_laevigata RLG00000024589
rosa_multiflora Rmu_co8473877.1_g000001
rosa_roxburghii Rroxscaffold_6G00414630
rosa_rugosa Rorug03G0080800
rosa_samantha Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana Rw3G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 476
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 183, 485
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 2 cut(s) 198, 604
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 62, 341, 620
AhdI GACNNNNNGTC 2 cut(s) 218, 445
AluBI AGCT 4 cut(s) 14, 48, 452, 535
AluI AGCT 4 cut(s) 14, 48, 452, 535
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 172, 205
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 2 cut(s) 183, 485
AspS9I GGNCC 2 cut(s) 139, 161
AvaII GGWCC 2 cut(s) 139, 161
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 544
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 172, 205
BfaI CTAG 1 cut(s) 482
BisI GCNGC 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 534
Bme18I GGWCC 2 cut(s) 139, 161
BmeRI GACNNNNNGTC 2 cut(s) 218, 445
BmgT120I GGNCC 2 cut(s) 139, 161
BmiI GGNNCC 1 cut(s) 140
BmsI GCATC 1 cut(s) 514
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 2 cut(s) 27, 90
BseRI GAGGAG 2 cut(s) 255, 611
BseXI GCAGC 1 cut(s) 544
BseYI CCCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 172, 205
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 588
Bsp1407I TGTACA 1 cut(s) 602
Bsp143I GATC 2 cut(s) 75, 269
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 1 cut(s) 476
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 28, 91
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 602
BssMI GATC 2 cut(s) 75, 269
Bst6I CTCTTC 1 cut(s) 522
BstAUI TGTACA 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 96, 113
BstDEI CTNAG 2 cut(s) 36, 99
BstKTI GATC 2 cut(s) 78, 272
BstMAI GTCTC 2 cut(s) 172, 205
BstMBI GATC 2 cut(s) 75, 269
BstMWI GCNNNNNNNGC 2 cut(s) 100, 458
BstV1I GCAGC 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 545
BsuRI GGCC 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 96, 113
Cfr13I GGNCC 2 cut(s) 139, 161
Csp6I GTAC 2 cut(s) 197, 603
CviAII CATG 3 cut(s) 172, 205, 653
CviJI RGCY 9 cut(s) 14, 30, 48, 98, 111, 379, 452, 535, 708
CviKI_1 RGCY 9 cut(s) 14, 30, 48, 98, 111, 379, 452, 535, 708
CviQI GTAC 2 cut(s) 197, 603
DdeI CTNAG 2 cut(s) 36, 99
DpnI GATC 2 cut(s) 77, 271
DpnII GATC 2 cut(s) 75, 269
DraI TTTAAA 2 cut(s) 418, 645
DriI GACNNNNNGTC 2 cut(s) 218, 445
Eam1104I CTCTTC 1 cut(s) 522
Eam1105I GACNNNNNGTC 2 cut(s) 218, 445
EarI CTCTTC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 139, 161
Eco57I CTGAAG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 658
FaeI CATG 3 cut(s) 175, 208, 656
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 171, 204, 652
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 533
FspBI CTAG 1 cut(s) 482
GluI GCNGC 1 cut(s) 533
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 379
Hin1II CATG 3 cut(s) 175, 208, 656
HinfI GANTC 2 cut(s) 243, 311
Hpy166II GTNNAC 2 cut(s) 384, 603
Hpy188I TCNGA 3 cut(s) 157, 519, 574
Hpy188III TCNNGA 4 cut(s) 79, 261, 273, 672
Hpy8I GTNNAC 2 cut(s) 384, 603
HpyAV CCTTC 2 cut(s) 162, 669
HpyCH4V TGCA 7 cut(s) 94, 317, 353, 359, 402, 505, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 458
HpyF3I CTNAG 2 cut(s) 36, 99
Hsp92II CATG 3 cut(s) 175, 208, 656
Kzo9I GATC 2 cut(s) 75, 269
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 2 cut(s) 540, 575
LpnPI CCDG 9 cut(s) 66, 80, 121, 177, 201, 246, 258, 282, 363
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 514
MaeI CTAG 1 cut(s) 482
MalI GATC 2 cut(s) 77, 271
MboI GATC 2 cut(s) 75, 269
MboII GAAGA 2 cut(s) 539, 632
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 9 cut(s) 57, 89, 104, 183, 397, 463, 485, 559, 637
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 46
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 2 cut(s) 417, 644
MunI CAATTG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 100, 458
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 75, 269
NlaIII CATG 3 cut(s) 175, 208, 656
NlaIV GGNNCC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 534
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 139, 161
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 2 cut(s) 198, 604
RsaNI GTAC 2 cut(s) 197, 603
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 2 cut(s) 417, 644
SatI GCNGC 1 cut(s) 533
Sau3AI GATC 2 cut(s) 75, 269
Sau96I GGNCC 2 cut(s) 139, 161
SchI GAGTC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 2 cut(s) 139, 161
Sse9I AATT 9 cut(s) 57, 89, 104, 183, 397, 463, 485, 559, 637
SsiI CCGC 1 cut(s) 476
SspI AATATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 482
TaqI TCGA 1 cut(s) 525
TasI AATT 9 cut(s) 57, 89, 104, 183, 397, 463, 485, 559, 637
TatI WGTACW 2 cut(s) 196, 602
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 417, 644
Tru9I TTAA 2 cut(s) 417, 644
TseI GCWGC 1 cut(s) 532
TspDTI ATGAA 5 cut(s) 195, 378, 580, 657, 688
VpaK11BI GGWCC 2 cut(s) 139, 161
XapI RAATTY 2 cut(s) 183, 485
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.