Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010857

Physical Location & Seq

Genomic Coordinates Reverse (-)

16362680 .. 16364624

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGATGGAAGGATTCAAAGAGAACCCTTCTGAGATCCACAGCTTCCCTGTCATGAATGTTCTATGTCCGATGAAGAAAAGAAAATTTCACGAGGAGCAATTGGGCTTGCCAATAACTAAGAGCAGGTGCTTGGAATGGGTATTTCCATCTGGTCAATCCATCTCCATGTTTGATGAAAACCTTGAAGTAAAGAACATGATAAAACAGACACTGAAGAGAAAGATAGACGGGGCATCCCTGGATGATGGGTCTGAACCTGAATCGGGAAGAGGTAGCAACAGTTTCGTTGGAGATTCTGATTCTGCAACGTCGGTTTATGGTGATTCAAAACTCGGACCCGTGCATGCACAGACATGCCAATATGATAGGCCTTCCACTTCATCAGCGAACGGCATCAGCCATAGTGCAGATGAACTAAAATATGCGAACGGAGACCAACAACCTATGCATCCTCATGGTGAAATTCAAGAATCTCAGAATCTTGAAGAGCCCATCCAGGAATTTGGAGACCAGGTGGATTACATTTTCGCAGAATATGGAGACGACTGCATTGAGCAATGTACGGACACGGGTTACGAAGATCTCATCTACCCGAACGGTTTGAACCCGAACACATATGTACTTTCGTCGGGAAGATGGAATGTGAACCAAGATAATTCAGAGGCTCAATCAGGCGGCAGCAGGAAGCCAACCATCGATCAAGAATTCGAGCAGTATTTTTCCTCCCTAATGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008104 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045185 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051235 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0072595 GO:0080090 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.5

Weight (kDa)

4.48

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37678 AT2G37678
fragaria_vesca	FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica	MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica	Prupe.6G257800_v2.0.a1
pyrus_communis	pycom04g11950 pycom12g13890
rosa_chinensis	RchiOBHm_Chr3g0466291
rosa_laevigata	RLG00000024589
rosa_multiflora	Rmu_co8473877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414630
rosa_rugosa	Rorug03G0080800
rosa_samantha	Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana	Rw3G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	117
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	4 cut(s)	86, 465, 503, 707
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	565, 624
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	6 cut(s)	19, 188, 330, 470, 488, 607
AjnI	CCWGG	3 cut(s)	240, 498, 513
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	429, 504, 537
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	681
ApoI	RAATTY	4 cut(s)	86, 465, 503, 707
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	335, 473
AvaII	GGWCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	495
BauI	CACGAG	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	693
BccI	CCATC	6 cut(s)	157, 170, 242, 503, 633, 704
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	3 cut(s)	242, 500, 515
BcoDI	GTCTC	3 cut(s)	429, 504, 537
BfmI	CTRYAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	2 cut(s)	679, 682
BlsI	GCNGC	2 cut(s)	680, 683
Bme1390I	CCNGG	3 cut(s)	242, 500, 515
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	3 cut(s)	242, 500, 515
BmsI	GCATC	3 cut(s)	245, 405, 460
Bsa29I	ATCGAT	1 cut(s)	699
BsaI	GGTCTC	2 cut(s)	429, 504
BsaJI	CCNNGG	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	566
BseBI	CCWGG	3 cut(s)	242, 500, 515
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	4 cut(s)	236, 250, 451, 495
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	2 cut(s)	24, 491
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	693
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	699
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	3 cut(s)	429, 504, 537
BsmBI	CGTCTC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	373
Bso31I	GGTCTC	2 cut(s)	429, 504
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	36, 583, 700
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	2 cut(s)	25, 490
BspDI	ATCGAT	1 cut(s)	699
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	483
BspTNI	GGTCTC	2 cut(s)	429, 504
BsrDI	GCAATG	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	36, 583, 700
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	3 cut(s)	242, 500, 515
Bst4CI	ACNGT	2 cut(s)	284, 602
Bst6I	CTCTTC	3 cut(s)	212, 265, 483
BstC8I	GCNNGC	2 cut(s)	110, 348
BstDEI	CTNAG	3 cut(s)	33, 120, 477
BstF5I	GGATG	4 cut(s)	236, 250, 451, 495
BstKTI	GATC	3 cut(s)	39, 586, 703
BstMAI	GTCTC	3 cut(s)	429, 504, 537
BstMBI	GATC	3 cut(s)	36, 583, 700
BstNI	CCWGG	3 cut(s)	242, 500, 515
BstNSI	RCATGY	2 cut(s)	350, 360
BstSCI	CCNGG	3 cut(s)	240, 498, 513
BstSFI	CTRYAG	1 cut(s)	737
BstV1I	GCAGC	1 cut(s)	693
BstX2I	RGATCY	2 cut(s)	36, 583
BstXI	CCANNNNNNTGG	1 cut(s)	506
BstYI	RGATCY	2 cut(s)	36, 583
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	1 cut(s)	373
BsuTUI	ATCGAT	1 cut(s)	699
BtsCI	GGATG	4 cut(s)	236, 250, 451, 495
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	110, 348
CaiI	CAGNNNCTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	338
ClaI	ATCGAT	1 cut(s)	699
CsiI	ACCWGGT	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	564, 623
CviAII	CATG	6 cut(s)	55, 169, 199, 347, 357, 458
CviJI	RGCY	7 cut(s)	45, 108, 373, 402, 493, 668, 691
CviKI_1	RGCY	7 cut(s)	45, 108, 373, 402, 493, 668, 691
CviQI	GTAC	2 cut(s)	564, 623
DdeI	CTNAG	3 cut(s)	33, 120, 477
DpnI	GATC	3 cut(s)	38, 585, 702
DpnII	GATC	3 cut(s)	36, 583, 700
Eam1104I	CTCTTC	3 cut(s)	212, 265, 483
EarI	CTCTTC	3 cut(s)	212, 265, 483
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	495
Eco31I	GGTCTC	2 cut(s)	429, 504
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	707
EcoRII	CCWGG	3 cut(s)	240, 498, 513
EcoT22I	ATGCAT	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	6 cut(s)	58, 172, 202, 350, 360, 461
FatI	CATG	6 cut(s)	54, 168, 198, 346, 356, 457
FauNDI	CATATG	1 cut(s)	619
Fnu4HI	GCNGC	2 cut(s)	679, 682
FokI	GGATG	4 cut(s)	223, 257, 438, 482
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	2 cut(s)	679, 682
GluI	GCNGC	2 cut(s)	679, 682
HaeIII	GGCC	1 cut(s)	373
Hin1II	CATG	6 cut(s)	58, 172, 202, 350, 360, 461
HinfI	GANTC	7 cut(s)	15, 263, 296, 302, 326, 473, 481
HphI	GGTGA	2 cut(s)	335, 473
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	7 cut(s)	34, 72, 256, 301, 338, 480, 664
Hpy188III	TCNNGA	7 cut(s)	55, 92, 267, 470, 485, 633, 704
Hpy8I	GTNNAC	1 cut(s)	649
Hpy99I	CGWCG	2 cut(s)	316, 634
HpyAV	CCTTC	3 cut(s)	5, 39, 384
HpyCH4III	ACNGT	2 cut(s)	284, 602
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	6 cut(s)	308, 346, 350, 410, 451, 552
HpyF3I	CTNAG	3 cut(s)	33, 120, 477
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	6 cut(s)	58, 172, 202, 350, 360, 461
Kzo9I	GATC	3 cut(s)	36, 583, 700
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	693
LweI	GCATC	3 cut(s)	245, 405, 460
MabI	ACCWGGT	1 cut(s)	513
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	3 cut(s)	38, 585, 702
MboI	GATC	3 cut(s)	36, 583, 700
MboII	GAAGA	6 cut(s)	88, 229, 282, 500, 593, 648
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	2 cut(s)	36, 583
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	6 cut(s)	86, 101, 465, 503, 658, 707
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	88, 266, 465, 658, 736
Mph1103I	ATGCAT	1 cut(s)	453
MslI	CAYNNNNRTG	3 cut(s)	167, 355, 456
MspR9I	CCNGG	3 cut(s)	242, 500, 515
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	3 cut(s)	242, 500, 515
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	3 cut(s)	36, 583, 700
NlaIII	CATG	6 cut(s)	58, 172, 202, 350, 360, 461
NlaIV	GGNNCC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	453
NspI	RCATGY	2 cut(s)	350, 360
PaeI	GCATGC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	483
PfeI	GAWTC	7 cut(s)	15, 263, 296, 302, 326, 473, 481
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	680, 683
Psp6I	CCWGG	3 cut(s)	240, 498, 513
PspGI	CCWGG	3 cut(s)	240, 498, 513
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	36, 583
RsaI	GTAC	2 cut(s)	565, 624
RsaNI	GTAC	2 cut(s)	564, 623
RseI	CAYNNNNRTG	3 cut(s)	167, 355, 456
SapI	GCTCTTC	1 cut(s)	483
SatI	GCNGC	2 cut(s)	679, 682
Sau3AI	GATC	3 cut(s)	36, 583, 700
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	3 cut(s)	242, 500, 515
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	8 cut(s)	47, 131, 186, 262, 277, 314, 448, 519
SexAI	ACCWGGT	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	245, 405, 460
SfcI	CTRYAG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	167, 355, 456
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	6 cut(s)	86, 101, 465, 503, 658, 707
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	678
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	240, 498, 513
TaaI	ACNGT	2 cut(s)	284, 602
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	699, 711
TasI	AATT	6 cut(s)	86, 101, 465, 503, 658, 707
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	7 cut(s)	15, 263, 296, 302, 326, 473, 481
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	681
TspDTI	ATGAA	5 cut(s)	71, 89, 192, 372, 429
TspGWI	ACGGA	2 cut(s)	447, 581
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	4 cut(s)	86, 465, 503, 707
XceI	RCATGY	2 cut(s)	350, 360
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.