Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010857

Physical Location & Seq

Genomic Coordinates Reverse (-)

21815391 .. 21817277

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1131300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGAAAAGAAAATTTCACGAGGAGCAATTAGGCTTGCCACCACCAAAGCACAGGTGCTGGGCACGAGTATTTCCATCTGATGAATCCGTCTCCATGTTTGATGGAAACCTTGAAATAAAGAATATGCAAAAACAGACACTGAACAGCAAGATAGACGGGGCATCCCTGGATGACAGGTCTGAACCTGAATCTGGAGGAGGCAGCAATAGTTTCGCCCGAGATTCTGGTTATGCAACGTCGGTTTATGGTGATTCTAAAGTCGGGCCCGTGTATGCACAGACATGCCAATACGATAGGCCTTCCACTTCATCAGGGAAAGGCATCAGCCATAGTGCAGATGAACTAAAATATGTGAATGGAGACCATCAACCTATGCATCCACACGACAAAATACAAGAATTTCAGAATCTTGAAGAACACATCCAGGAATTTGGAAACCGGATGGATTACATTTTCGCAGAACACGGAGATGACTGCATTGAGGAATGTATGGACACAGGTTGCGAAGATCTCATCTACCCCAACGGTTTGAAGCCGAACACATATGTACTTTCATCCGGAAGATGGAGTGTGAACCAAGAGGGTCAATCAGCAGGCAGCAGCAGGAAGCCAACCATTGATCAAGAATTCGAGCAGTATTTTTCCTCGCTAATGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008104 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045185 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051235 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0072595 GO:0080090 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.75

Weight (kDa)

4.99

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37678 AT2G37678
fragaria_vesca	FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica	MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica	Prupe.6G257800_v2.0.a1
pyrus_communis	pycom04g11950 pycom12g13890
rosa_chinensis	RchiOBHm_Chr3g0466291
rosa_laevigata	RLG00000024589
rosa_multiflora	Rmu_co8473877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414630
rosa_rugosa	Rorug03G0080800
rosa_samantha	Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana	Rw3G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	560
AcsI	RAATTY	4 cut(s)	14, 401, 431, 629
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	194, 567
AgsI	TTSAA	3 cut(s)	116, 416, 535
AjnI	CCWGG	2 cut(s)	168, 426
Alw26I	GTCTC	2 cut(s)	97, 357
AlwNI	CAGNNNCTG	2 cut(s)	60, 142
Ama87I	CYCGRG	1 cut(s)	219
Aor13HI	TCCGGA	1 cut(s)	560
AoxI	GGCC	2 cut(s)	266, 299
ApaI	GGGCCC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	204, 600, 603
ApoI	RAATTY	4 cut(s)	14, 401, 431, 629
AspS9I	GGNCC	2 cut(s)	266, 267
AsuHPI	GGTGA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	219
BaeGI	GKGCMC	2 cut(s)	67, 270
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	2 cut(s)	20, 66
BbvI	GCAGC	3 cut(s)	216, 612, 615
BccI	CCATC	5 cut(s)	85, 98, 375, 439, 561
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	2 cut(s)	170, 428
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	97, 357
BfmI	CTRYAG	1 cut(s)	659
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	3 cut(s)	205, 601, 604
BlsI	GCNGC	3 cut(s)	206, 602, 605
Bme1390I	CCNGG	2 cut(s)	170, 428
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	266, 267
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	170, 428
BmsI	GCATC	3 cut(s)	173, 333, 388
BpmI	CTGGAG	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	2 cut(s)	441, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 567
BseAI	TCCGGA	1 cut(s)	560
BseBI	CCWGG	2 cut(s)	170, 428
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	6 cut(s)	164, 178, 379, 423, 450, 557
BseLI	CCNNNNNNNGG	2 cut(s)	194, 567
BseRI	GAGGAG	2 cut(s)	38, 213
BseSI	GKGCMC	2 cut(s)	67, 270
BseXI	GCAGC	3 cut(s)	216, 612, 615
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	268, 301
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	442, 561
BslI	CCNNNNNNNGG	2 cut(s)	194, 567
BsmAI	GTCTC	2 cut(s)	97, 357
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	268, 301
Bso31I	GGTCTC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	219
Bsp120I	GGGCCC	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	67, 270
Bsp13I	TCCGGA	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	511, 622
BspANI	GGCC	2 cut(s)	268, 301
BspEI	TCCGGA	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	511, 622
BssSI	CACGAG	2 cut(s)	20, 66
Bst2BI	CACGAG	2 cut(s)	20, 66
Bst2UI	CCWGG	2 cut(s)	170, 428
Bst4CI	ACNGT	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	38, 598
BstF5I	GGATG	6 cut(s)	164, 178, 379, 423, 450, 557
BstKTI	GATC	2 cut(s)	514, 625
BstMAI	GTCTC	2 cut(s)	97, 357
BstMBI	GATC	2 cut(s)	511, 622
BstNI	CCWGG	2 cut(s)	170, 428
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	168, 426
BstSFI	CTRYAG	1 cut(s)	659
BstSLI	GKGCMC	2 cut(s)	67, 270
BstV1I	GCAGC	3 cut(s)	216, 612, 615
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	268, 301
BtsCI	GGATG	6 cut(s)	164, 178, 379, 423, 450, 557
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	38, 598
CaiI	CAGNNNCTG	2 cut(s)	60, 142
Cfr13I	GGNCC	2 cut(s)	266, 267
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	2 cut(s)	97, 285
CviJI	RGCY	6 cut(s)	36, 268, 301, 330, 538, 613
CviKI_1	RGCY	6 cut(s)	36, 268, 301, 330, 538, 613
CviQI	GTAC	1 cut(s)	551
DpnI	GATC	2 cut(s)	513, 624
DpnII	GATC	2 cut(s)	511, 622
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	168, 426
EcoT22I	ATGCAT	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	2 cut(s)	100, 288
FatI	CATG	2 cut(s)	96, 284
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	3 cut(s)	205, 601, 604
FokI	GGATG	6 cut(s)	151, 185, 366, 410, 457, 544
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	205, 601, 604
GluI	GCNGC	3 cut(s)	205, 601, 604
GsaI	CCCAGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	268, 301
HapII	CCGG	2 cut(s)	442, 561
Hin1II	CATG	2 cut(s)	100, 288
HinfI	GANTC	5 cut(s)	86, 191, 224, 254, 409
HpaII	CCGG	2 cut(s)	442, 561
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	82, 184, 408
Hpy188III	TCNNGA	5 cut(s)	20, 195, 413, 561, 626
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	6 cut(s)	130, 236, 278, 338, 379, 480
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	100, 288
Kpn2I	TCCGGA	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	511, 622
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	216, 612, 615
LweI	GCATC	3 cut(s)	173, 333, 388
MaeII	ACGT	1 cut(s)	239
MalI	GATC	2 cut(s)	513, 624
MboI	GATC	2 cut(s)	511, 622
MboII	GAAGA	4 cut(s)	16, 428, 521, 576
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	67, 270
MluCI	AATT	5 cut(s)	14, 29, 401, 431, 629
MnlI	CCTC	6 cut(s)	16, 191, 194, 478, 577, 658
Mph1103I	ATGCAT	1 cut(s)	381
MroI	TCCGGA	1 cut(s)	560
MslI	CAYNNNNRTG	2 cut(s)	283, 471
MspI	CCGG	2 cut(s)	442, 561
MspR9I	CCNGG	2 cut(s)	170, 428
MvaI	CCWGG	2 cut(s)	170, 428
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	511, 622
NlaIII	CATG	2 cut(s)	100, 288
NlaIV	GGNNCC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	381
NspI	RCATGY	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	301
PfeI	GAWTC	5 cut(s)	86, 191, 224, 254, 409
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	206, 602, 605
Psp6I	CCWGG	2 cut(s)	168, 426
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	2 cut(s)	168, 426
PspN4I	GGNNCC	1 cut(s)	268
PspOMI	GGGCCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	266, 267
PstNI	CAGNNNCTG	2 cut(s)	60, 142
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	2 cut(s)	283, 471
SatI	GCNGC	3 cut(s)	205, 601, 604
Sau3AI	GATC	2 cut(s)	511, 622
Sau96I	GGNCC	2 cut(s)	266, 267
ScrFI	CCNGG	2 cut(s)	170, 428
SduI	GDGCHC	2 cut(s)	67, 270
SetI	ASST	7 cut(s)	59, 114, 182, 190, 242, 376, 505
SfaNI	GCATC	3 cut(s)	173, 333, 388
SfcI	CTRYAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	283, 471
Sse9I	AATT	5 cut(s)	14, 29, 401, 431, 629
SseBI	AGGCCT	1 cut(s)	301
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	168, 426
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	633
TasI	AATT	5 cut(s)	14, 29, 401, 431, 629
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	5 cut(s)	86, 191, 224, 254, 409
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	3 cut(s)	204, 600, 603
TspDTI	ATGAA	5 cut(s)	17, 99, 300, 357, 546
TspGWI	ACGGA	2 cut(s)	79, 483
TspRI	CASTG	1 cut(s)	147
XapI	RAATTY	4 cut(s)	14, 401, 431, 629
XceI	RCATGY	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.