Rh3AG127100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010857
Physical Location & Seq
Forward (+)
10967973 .. 10968728
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG127100.1

Sequence Viewer

Length: 600 bp
ATGTTTGATGAAAATCCTGACCAAGTACAGAACATGCAGACACACGTAGTCAAGAGAGAAATAGAGGGAGCATTCCTCAATGACGGGTCTGGTCCCGGATCGGGAAAAGGTAGCAATAGTTTTGCAGGAGATTATTGTGATTCTGCAATGTCGGTTTATAGTGAAGCTGAACTAAACGCAGCATATGCAAAGAGCATATATGATAGGCCTTCCACTTCATCTGTCAATTGCGATGTCAATATTTTTAAAGATACCGACAGCAGTTTGGACACTCTGTCAGCTATGGAAGCAAATTATAGCGAAGCAGAATTAGAACTCATGAATGTAGAAGTGCATCAACCTATTCAGAACCATGAAGAGCAGCTCCAAGAATTTGGAGGCGAGGCAAATTACATCTGCTCAGAATATGGAGACCACTTCATTGAGGAATGTACAGATAAGGAAGTTGAAGATATTATCTACTCCAATTCTCTGAACCCGCATACATATGTACTTTCATCTGGAAGGTGGAGTGTAAATCAAGAGGCTCAATCAGGCAGCAGCAGGAAGCCAACCATCGATCAAGAATTTGAGCAGTACTTTTCATCGCTTATGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.2

Weight (kDa)

4.15

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37678 AT2G37678
fragaria_vesca FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica Prupe.6G257800_v2.0.a1
pyrus_communis pycom04g11950 pycom12g13890
rosa_chinensis RchiOBHm_Chr3g0466291
rosa_laevigata RLG00000024589
rosa_multiflora Rmu_co8473877.1_g000001
rosa_roxburghii Rroxscaffold_6G00414630
rosa_rugosa Rorug03G0080800
rosa_samantha Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana Rw3G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 479
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 2 cut(s) 371, 566
AfaI GTAC 4 cut(s) 27, 433, 492, 578
AfiI CCNNNNNNNGG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 449
AhdI GACNNNNNGTC 1 cut(s) 274
AluBI AGCT 3 cut(s) 167, 281, 364
AluI AGCT 3 cut(s) 167, 281, 364
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 1 cut(s) 106
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 4 cut(s) 179, 361, 537, 540
ApoI RAATTY 2 cut(s) 371, 566
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 96
AvaII GGWCC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 191, 373, 549, 552
BccI CCATC 1 cut(s) 563
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 405
BisI GCNGC 4 cut(s) 180, 362, 538, 541
BlsI GCNGC 4 cut(s) 181, 363, 539, 542
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 92
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 343
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BpuMI CCSGG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 558
BsaAI YACGTR 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 12
BseCI ATCGAT 1 cut(s) 558
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 414
BseXI GCAGC 4 cut(s) 191, 373, 549, 552
BshFI GGCC 1 cut(s) 208
BshVI ATCGAT 1 cut(s) 558
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 405
Bsp1407I TGTACA 1 cut(s) 431
Bsp143I GATC 2 cut(s) 98, 559
BspACI CCGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 413
BspDI ATCGAT 1 cut(s) 558
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 431
BssMI GATC 2 cut(s) 98, 559
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 400
BstKTI GATC 2 cut(s) 101, 562
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 2 cut(s) 98, 559
BstMWI GCNNNNNNNGC 2 cut(s) 185, 287
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 4 cut(s) 191, 373, 549, 552
BstXI CCANNNNNNTGG 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 558
BsuRI GGCC 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 558
BtgZI GCGATG 2 cut(s) 246, 570
CciI TCATGA 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 558
Csp6I GTAC 4 cut(s) 26, 432, 491, 577
CviAII CATG 3 cut(s) 34, 319, 353
CviJI RGCY 6 cut(s) 167, 208, 281, 364, 527, 550
CviKI_1 RGCY 6 cut(s) 167, 208, 281, 364, 527, 550
CviQI GTAC 4 cut(s) 26, 432, 491, 577
DdeI CTNAG 1 cut(s) 400
DpnI GATC 2 cut(s) 100, 561
DpnII GATC 2 cut(s) 98, 559
DraI TTTAAA 1 cut(s) 247
DriI GACNNNNNGTC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 351
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 92
FaeI CATG 3 cut(s) 37, 322, 356
FaqI GGGAC 1 cut(s) 78
FatI CATG 3 cut(s) 33, 318, 352
FauI CCCGC 1 cut(s) 486
FauNDI CATATG 2 cut(s) 184, 487
Fnu4HI GCNGC 4 cut(s) 180, 362, 538, 541
Fsp4HI GCNGC 4 cut(s) 180, 362, 538, 541
GluI GCNGC 4 cut(s) 180, 362, 538, 541
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 96
Hin1II CATG 3 cut(s) 37, 322, 356
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 348, 403, 474
Hpy188III TCNNGA 7 cut(s) 17, 52, 102, 319, 501, 521, 563
HpyAV CCTTC 2 cut(s) 219, 498
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 5 cut(s) 37, 125, 146, 188, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 287
HpyF3I CTNAG 1 cut(s) 400
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 3 cut(s) 37, 322, 356
Kzo9I GATC 2 cut(s) 98, 559
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 68, 369
LpnPI CCDG 7 cut(s) 30, 75, 109, 111, 486, 519, 529
Lsp1109I GCAGC 4 cut(s) 191, 373, 549, 552
LweI GCATC 1 cut(s) 343
MaeII ACGT 1 cut(s) 45
MalI GATC 2 cut(s) 100, 561
MboI GATC 2 cut(s) 98, 559
MboII GAAGA 2 cut(s) 368, 461
MfeI CAATTG 1 cut(s) 226
MluCI AATT 7 cut(s) 226, 292, 308, 371, 388, 466, 566
MnlI CCTC 6 cut(s) 58, 86, 371, 376, 418, 517
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 185, 287
NciI CCSGG 1 cut(s) 96
NdeI CATATG 2 cut(s) 184, 487
NdeII GATC 2 cut(s) 98, 559
NlaIII CATG 3 cut(s) 37, 322, 356
NlaIV GGNNCC 1 cut(s) 94
NspI RCATGY 1 cut(s) 37
PagI TCATGA 1 cut(s) 318
PceI AGGCCT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 351
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 4 cut(s) 181, 363, 539, 542
Ppu21I YACGTR 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 92
RsaI GTAC 4 cut(s) 27, 433, 492, 578
RsaNI GTAC 4 cut(s) 26, 432, 491, 577
RseI CAYNNNNRTG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 4 cut(s) 180, 362, 538, 541
Sau3AI GATC 2 cut(s) 98, 559
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 96
SetI ASST 7 cut(s) 48, 112, 169, 283, 343, 366, 509
SfaNI GCATC 1 cut(s) 343
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 486
Sse9I AATT 7 cut(s) 226, 292, 308, 371, 388, 466, 566
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 1 cut(s) 479
SspI AATATT 1 cut(s) 241
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 94
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 558
TasI AATT 7 cut(s) 226, 292, 308, 371, 388, 466, 566
TatI WGTACW 4 cut(s) 25, 431, 490, 576
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 4 cut(s) 179, 361, 537, 540
TspDTI ATGAA 7 cut(s) 24, 207, 335, 369, 409, 486, 573
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 2 cut(s) 371, 566
XceI RCATGY 1 cut(s) 37
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.