Rroxscaffold_6G00414630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010857
Physical Location & Seq
Reverse (-)
36948110 .. 36950237
2128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414630.1

Sequence Viewer

Length: 771 bp
ATGGAGATGGATGCAGAATCTAAACATAGCCCAATTGAGATTGACAGCTTCCCTGTCATTGAAGTTGGAAAGACAATCAAGAAAAGAAAATTGCAGGCCGAGCAATTGGGCTTGCCTGTACCCAAGCACAAATGCGGGGACCCGAACTTTCCGTCTGATGAACATGTCTCCATGTTTGATGAAAATCCTGATCAAGTACAGAACATGCAGACACACGTAGTCAAGAGAGAAATAGAGGGAGTATTCCTCAATGACGGGTCTGGTCCTGGATCGGGAAAAGGTAGCAATAGTTTTGCAGGAGATTATTGTGATTCTGCAATGTCGGTTTATAGTGAAGCTGAACTAAACGCAGCATATGCAAAGAGCGTATATGATAGGCCTTCCACTTCATCTGTCAATTGCAATGTCAATATTTTTAAAGATACCGACAGCAGTTTGGACACTCTGTCAGCTATGGAAGCAAATTATAGCGAAGCAGAATTAGAACTCATGAATGTAGAAGTGCATCAACCTATTCAGAACCTTGAAGAGCAGCTCCAAGAATTTGGAGGCGAGGCAAAGTACATCTGCTCAGAATATGGAGACCACTTCATTGAGGAATGTACAGATAAGGAAGTTGAAGATATTATCTACTCCAATTCTTTGAACCCGCATACATATGTACTTTCATCTGGAAGGTGGAGTGTAAATCAAGAGGCTCAATCAGGCAGCAGCAGGAAGCCAACCATCGATCAAGAATTTGAGCAGTACTTTTCATCCCTTATGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.55

Weight (kDa)

4.44

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37678 AT2G37678
fragaria_vesca FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica Prupe.6G257800_v2.0.a1
pyrus_communis pycom04g11950 pycom12g13890
rosa_chinensis RchiOBHm_Chr3g0466291
rosa_laevigata RLG00000024589
rosa_multiflora Rmu_co8473877.1_g000001
rosa_roxburghii Rroxscaffold_6G00414630
rosa_rugosa Rorug03G0080800
rosa_samantha Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana Rw3G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 135, 650
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 542, 737
AfaI GTAC 6 cut(s) 120, 198, 563, 604, 663, 749
AfiI CCNNNNNNNGG 1 cut(s) 272
AflIII ACRYGT 2 cut(s) 163, 214
AgsI TTSAA 4 cut(s) 62, 527, 620, 646
AhdI GACNNNNNGTC 1 cut(s) 445
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 4 cut(s) 48, 338, 452, 535
AluI AGCT 4 cut(s) 48, 338, 452, 535
Alw26I GTCTC 2 cut(s) 172, 576
AlwI GGATC 1 cut(s) 277
AoxI GGCC 2 cut(s) 96, 377
ApeKI GCWGC 4 cut(s) 350, 532, 708, 711
ApoI RAATTY 2 cut(s) 542, 737
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspS9I GGNCC 2 cut(s) 139, 263
AvaII GGWCC 2 cut(s) 139, 263
BbvI GCAGC 4 cut(s) 362, 544, 720, 723
BccI CCATC 1 cut(s) 734
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 172, 576
BisI GCNGC 4 cut(s) 351, 533, 709, 712
BlsI GCNGC 4 cut(s) 352, 534, 710, 713
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 139, 263
BmeRI GACNNNNNGTC 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 139, 263
BmiI GGNNCC 2 cut(s) 140, 141
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 514
BplI GAGNNNNNCTC 2 cut(s) 231, 263
Bsa29I ATCGAT 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 576
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 324, 409
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 729
BseGI GGATG 2 cut(s) 16, 755
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 2 cut(s) 324, 409
BseMII CTCAG 1 cut(s) 585
BseXI GCAGC 4 cut(s) 362, 544, 720, 723
BshFI GGCC 2 cut(s) 98, 379
BshVI ATCGAT 1 cut(s) 729
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 172, 576
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 98, 379
Bso31I GGTCTC 1 cut(s) 576
Bsp1407I TGTACA 1 cut(s) 602
Bsp143I GATC 3 cut(s) 190, 269, 730
BspACI CCGC 2 cut(s) 135, 650
BspANI GGCC 2 cut(s) 98, 379
BspCNI CTCAG 1 cut(s) 584
BspDI ATCGAT 1 cut(s) 729
BspHI TCATGA 1 cut(s) 489
BspLI GGNNCC 2 cut(s) 140, 141
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 2 cut(s) 324, 409
BsrGI TGTACA 1 cut(s) 602
BssMI GATC 3 cut(s) 190, 269, 730
Bst2UI CCWGG 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 522
BstAPI GCANNNNNTGC 1 cut(s) 356
BstAUI TGTACA 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 96, 113
BstDEI CTNAG 1 cut(s) 571
BstF5I GGATG 2 cut(s) 16, 755
BstKTI GATC 3 cut(s) 193, 272, 733
BstMAI GTCTC 2 cut(s) 172, 576
BstMBI GATC 3 cut(s) 190, 269, 730
BstMWI GCNNNNNNNGC 3 cut(s) 100, 356, 458
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 2 cut(s) 167, 208
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 4 cut(s) 362, 544, 720, 723
BstXI CCANNNNNNTGG 1 cut(s) 545
Bsu15I ATCGAT 1 cut(s) 729
BsuRI GGCC 2 cut(s) 98, 379
BsuTUI ATCGAT 1 cut(s) 729
BtsCI GGATG 2 cut(s) 16, 755
Cac8I GCNNGC 2 cut(s) 96, 113
CciI TCATGA 1 cut(s) 489
Cfr13I GGNCC 2 cut(s) 139, 263
ClaI ATCGAT 1 cut(s) 729
Csp6I GTAC 6 cut(s) 119, 197, 562, 603, 662, 748
CviAII CATG 4 cut(s) 164, 172, 205, 490
CviQI GTAC 6 cut(s) 119, 197, 562, 603, 662, 748
DdeI CTNAG 1 cut(s) 571
DpnI GATC 3 cut(s) 192, 271, 732
DpnII GATC 3 cut(s) 190, 269, 730
DraI TTTAAA 1 cut(s) 418
DriI GACNNNNNGTC 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 522
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 522
Eco147I AGGCCT 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 139, 263
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 4 cut(s) 167, 175, 208, 493
FaqI GGGAC 1 cut(s) 152
FatI CATG 4 cut(s) 163, 171, 204, 489
FauI CCCGC 2 cut(s) 128, 657
FauNDI CATATG 2 cut(s) 355, 658
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 351, 533, 709, 712
FokI GGATG 2 cut(s) 23, 742
Fsp4HI GCNGC 4 cut(s) 351, 533, 709, 712
GluI GCNGC 4 cut(s) 351, 533, 709, 712
HaeIII GGCC 2 cut(s) 98, 379
Hin1II CATG 4 cut(s) 167, 175, 208, 493
HinfI GANTC 2 cut(s) 17, 311
Hpy188I TCNGA 3 cut(s) 157, 519, 574
Hpy188III TCNNGA 8 cut(s) 79, 188, 223, 273, 490, 672, 692, 734
HpyAV CCTTC 2 cut(s) 390, 669
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 8 cut(s) 14, 94, 208, 296, 317, 359, 402, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 356, 458
HpyF3I CTNAG 1 cut(s) 571
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 4 cut(s) 167, 175, 208, 493
KflI GGGWCCC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 190, 269, 730
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 4 cut(s) 362, 544, 720, 723
LweI GCATC 1 cut(s) 514
MaeII ACGT 1 cut(s) 216
MalI GATC 3 cut(s) 192, 271, 732
MboI GATC 3 cut(s) 190, 269, 730
MboII GAAGA 2 cut(s) 539, 632
MfeI CAATTG 3 cut(s) 33, 104, 397
MluCI AATT 9 cut(s) 33, 89, 104, 397, 463, 479, 542, 637, 737
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 6 cut(s) 229, 257, 542, 547, 589, 688
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 3 cut(s) 33, 104, 397
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 100, 356, 458
NdeI CATATG 2 cut(s) 355, 658
NdeII GATC 3 cut(s) 190, 269, 730
NlaIII CATG 4 cut(s) 167, 175, 208, 493
NlaIV GGNNCC 2 cut(s) 140, 141
NmeAIII GCCGAG 1 cut(s) 124
NspI RCATGY 2 cut(s) 167, 208
PagI TCATGA 1 cut(s) 489
PceI AGGCCT 1 cut(s) 379
PciI ACATGT 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 17, 311
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 4 cut(s) 352, 534, 710, 713
Ppu21I YACGTR 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 139
PscI ACATGT 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 140, 141
PspPI GGNCC 2 cut(s) 139, 263
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 6 cut(s) 120, 198, 563, 604, 663, 749
RsaNI GTAC 6 cut(s) 119, 197, 562, 603, 662, 748
RseI CAYNNNNRTG 1 cut(s) 657
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 4 cut(s) 351, 533, 709, 712
Sau3AI GATC 3 cut(s) 190, 269, 730
Sau96I GGNCC 2 cut(s) 139, 263
ScaI AGTACT 1 cut(s) 749
ScrFI CCNGG 1 cut(s) 267
SetI ASST 9 cut(s) 50, 219, 283, 340, 454, 514, 525, 537, 680
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 2 cut(s) 139, 263
SmiMI CAYNNNNRTG 1 cut(s) 657
Sse9I AATT 9 cut(s) 33, 89, 104, 397, 463, 479, 542, 637, 737
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 2 cut(s) 135, 650
SspI AATATT 1 cut(s) 412
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 265
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 729
TasI AATT 9 cut(s) 33, 89, 104, 397, 463, 479, 542, 637, 737
TatI WGTACW 5 cut(s) 196, 561, 602, 661, 747
TfiI GAWTC 2 cut(s) 17, 311
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseI GCWGC 4 cut(s) 350, 532, 708, 711
TspDTI ATGAA 7 cut(s) 174, 195, 378, 506, 580, 657, 744
TspGWI ACGGA 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 139, 263
XapI RAATTY 2 cut(s) 542, 737
XceI RCATGY 2 cut(s) 167, 208
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.