Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010857

Physical Location & Seq

Genomic Coordinates Reverse (-)

14931295 .. 14932959

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTTCTCTCCCGTATGCATTGCAGTTCGTTTCTCTGGATCGATATGGAGATGGAAGGATTCAAAGAGAACCCATCTGAGATCCACAGCTTTTCTGATCTTTGTTCTGCTATTAATGTCTTAAACAGCTTCCCTGTCATCAATGTTATAAGTCCGATGAAGAAAAGAAAATTTCACGAGGAACAATTGGGCTTGCCAACACCAAAGCACAGGTGCTGGGCACGAGTATTTCCATCTGATGAATCCGTCTCCATGTTTGATGGAAACCATGAAATAAAGAATATGCAAAAACAGACGCTGAACAGAAAGACGGGGCAACCCCGGATGACAGGTCTGAACCTGAATCCGGAGGAGGCAGCAATAGTTTCACCGGAGATTCTGGTTATGCAACGTTGGTTTATGGTGATTCTAAAGTCGGACCCGTGTATGCACAGACATGCCAATACGATAGGCCTTCCACTTCAACTGGGAACGGCATCAGCCATAGTGCAGATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008104 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045185 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051235 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0072595 GO:0080090 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.0

Weight (kDa)

7.76

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37678 AT2G37678
fragaria_vesca	FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica	MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica	Prupe.6G257800_v2.0.a1
pyrus_communis	pycom04g11950 pycom12g13890
rosa_chinensis	RchiOBHm_Chr3g0466291
rosa_laevigata	RLG00000024589
rosa_multiflora	Rmu_co8473877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414630
rosa_rugosa	Rorug03G0080800
rosa_samantha	Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana	Rw3G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	346
AclI	AACGTT	1 cut(s)	391
AclWI	GGATC	2 cut(s)	47, 76
AcsI	RAATTY	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	64, 464
AluBI	AGCT	2 cut(s)	90, 129
AluI	AGCT	2 cut(s)	90, 129
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	2 cut(s)	47, 76
AlwNI	CAGNNNCTG	2 cut(s)	216, 298
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	170
AseI	ATTAAT	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	360, 415
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	223
BauI	CACGAG	2 cut(s)	176, 222
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	4 cut(s)	46, 82, 241, 254
BceAI	ACGGC	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	322
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	2 cut(s)	346, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	19
BseAI	TCCGGA	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	453
BshVI	ATCGAT	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	322, 347, 371
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	253
BsmBI	CGTCTC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	39, 81, 97
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	42
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	47, 76
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	3 cut(s)	39, 81, 97
BssSI	CACGAG	2 cut(s)	176, 222
Bst2BI	CACGAG	2 cut(s)	176, 222
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	3 cut(s)	42, 84, 100
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	3 cut(s)	39, 81, 97
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	453
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	2 cut(s)	216, 298
Cfr13I	GGNCC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	304
CviAII	CATG	3 cut(s)	253, 269, 437
CviJI	RGCY	5 cut(s)	90, 129, 192, 453, 482
CviKI_1	RGCY	5 cut(s)	90, 129, 192, 453, 482
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	41, 83, 99
DpnII	GATC	3 cut(s)	39, 81, 97
Eco147I	AGGCCT	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	3 cut(s)	256, 272, 440
FatI	CATG	3 cut(s)	252, 268, 436
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	3 cut(s)	322, 347, 371
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	256, 272, 440
HinfI	GANTC	5 cut(s)	60, 242, 343, 376, 406
HpaII	CCGG	3 cut(s)	322, 347, 371
HphI	GGTGA	2 cut(s)	360, 415
Hpy188I	TCNGA	6 cut(s)	79, 97, 156, 238, 336, 418
Hpy188III	TCNNGA	3 cut(s)	37, 176, 347
HpyAV	CCTTC	2 cut(s)	50, 464
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	6 cut(s)	19, 24, 286, 388, 430, 490
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	256, 272, 440
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	39, 81, 97
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	485
MaeII	ACGT	1 cut(s)	391
MalI	GATC	3 cut(s)	41, 83, 99
MboI	GATC	3 cut(s)	39, 81, 97
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	185
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	170, 185
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	172, 343, 346
Mph1103I	ATGCAT	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	2 cut(s)	114, 122
MslI	CAYNNNNRTG	1 cut(s)	435
MspI	CCGG	3 cut(s)	322, 347, 371
MspR9I	CCNGG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	39, 81, 97
NlaIII	CATG	3 cut(s)	256, 272, 440
NlaIV	GGNNCC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	453
PfeI	GAWTC	5 cut(s)	60, 242, 343, 376, 406
PkrI	GCNGC	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	149
Psp1406I	AACGTT	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	2 cut(s)	216, 298
PsuI	RGATCY	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	114, 122
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	3 cut(s)	39, 81, 97
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	6 cut(s)	92, 131, 215, 334, 342, 394
SfaNI	GCATC	1 cut(s)	485
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	2 cut(s)	170, 185
SseBI	AGGCCT	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	320
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	170, 185
TfiI	GAWTC	5 cut(s)	60, 242, 343, 376, 406
Tru1I	TTAA	2 cut(s)	114, 122
Tru9I	TTAA	2 cut(s)	114, 122
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	173, 255, 285
TspGWI	ACGGA	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	418
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.