RLG00000024589

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010857
Physical Location & Seq
Reverse (-)
37297363 .. 37299128
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024589

Sequence Viewer

Length: 765 bp
ATGGATGCAGAATCTAAACAAAGCCCAATTGAGATTGACAGCTTCCCTGTCATTGAAGTTGGAAAGACAATCAAGAAAAGAAAATTGCAGGCTGAGCAATTGGGCTTGCCTGTACCCAAGCACAAATGCTGGGACCTGAACTTTCCGTCTGATGAACATGTCTCCATGTTTGATGAAAATCCTGACCAAGTACAGAACATGGAGACACACGTAGTCAAGAGAGAAATAGAGGGAGTATTCCTCAATGACGGGTCTGGTCCCGGATCGGGAAAAGGTAGCAATAGTTTTGCAGGAGATTATTGTGATTCTGCAATGTCGATTTATAGTGAAGCTGAACTAAACGCAGCATATGCAAAGAATGTATATGATAGGCCTTCCACTTCATCTGTCAATTGCAATGTCAGTATTTTTAAAGATACCGACAGCAGTTTGGACACTCTGTCAGCTATGGAAGCAAATTATAGCGAAGCAGAATTAGAACTCATGAATGTAGAAGTGCATCAACCTATTCAGAACCTTGAAGAGCAGCTCCAAGAATTTGGAGGCGAGGCAAATTACATCTGCTCAGAATATGGAGACCACTTCATTGAGGAATGTACAGATAAGGAAGTTGAAGATATTATCTACTCCAATTCTTTGAACCCGCATACATATGTACTTTCATCTGGAAGGTGGAGTGTAAATCAAGAGGTTCAATCAGGCAGCAGCAGGAAGCCAACCATCGATCAAGAATTTGAGCAGTACTTTTCATCGCTTATGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.46

Weight (kDa)

4.36

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37678 AT2G37678
fragaria_vesca FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica Prupe.6G257800_v2.0.a1
pyrus_communis pycom04g11950 pycom12g13890
rosa_chinensis RchiOBHm_Chr3g0466291
rosa_laevigata RLG00000024589
rosa_multiflora Rmu_co8473877.1_g000001
rosa_roxburghii Rroxscaffold_6G00414630
rosa_rugosa Rorug03G0080800
rosa_samantha Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana Rw3G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 644
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 2 cut(s) 536, 731
AfaI GTAC 5 cut(s) 114, 192, 598, 657, 743
AfiI CCNNNNNNNGG 1 cut(s) 266
AflIII ACRYGT 2 cut(s) 157, 208
AgsI TTSAA 5 cut(s) 56, 521, 614, 640, 695
AhdI GACNNNNNGTC 1 cut(s) 439
AluBI AGCT 4 cut(s) 42, 332, 446, 529
AluI AGCT 4 cut(s) 42, 332, 446, 529
Alw26I GTCTC 3 cut(s) 166, 197, 570
AlwI GGATC 1 cut(s) 271
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 4 cut(s) 344, 526, 702, 705
ApoI RAATTY 2 cut(s) 536, 731
AspS9I GGNCC 2 cut(s) 133, 257
AsuC2I CCSGG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 133, 257
BbvI GCAGC 4 cut(s) 356, 538, 714, 717
BccI CCATC 1 cut(s) 728
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 3 cut(s) 166, 197, 570
BisI GCNGC 4 cut(s) 345, 527, 703, 706
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 4 cut(s) 346, 528, 704, 707
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 2 cut(s) 133, 257
BmeRI GACNNNNNGTC 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 133, 257
BmiI GGNNCC 2 cut(s) 134, 259
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 508
BplI GAGNNNNNCTC 2 cut(s) 225, 257
Bpu1102I GCTNAGC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 723
BsaAI YACGTR 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 570
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse3DI GCAATG 2 cut(s) 318, 403
Bse8I GATNNNNATC 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 723
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 2 cut(s) 318, 403
BseMII CTCAG 2 cut(s) 84, 579
BseXI GCAGC 4 cut(s) 356, 538, 714, 717
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 373
BshVI ATCGAT 1 cut(s) 723
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 2 cut(s) 146, 243
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 3 cut(s) 166, 197, 570
BsmFI GGGAC 2 cut(s) 146, 243
BsnI GGCC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 570
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 2 cut(s) 263, 724
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 1 cut(s) 644
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 2 cut(s) 85, 578
BspDI ATCGAT 1 cut(s) 723
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 134, 259
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 516
BspTNI GGTCTC 1 cut(s) 570
BsrDI GCAATG 2 cut(s) 318, 403
BsrGI TGTACA 1 cut(s) 596
BssMI GATC 2 cut(s) 263, 724
Bst6I CTCTTC 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 90, 107
BstDEI CTNAG 2 cut(s) 93, 565
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 266, 727
BstMAI GTCTC 3 cut(s) 166, 197, 570
BstMBI GATC 2 cut(s) 263, 724
BstMWI GCNNNNNNNGC 3 cut(s) 94, 350, 452
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 4 cut(s) 356, 538, 714, 717
BstXI CCANNNNNNTGG 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 723
BsuRI GGCC 1 cut(s) 373
BsuTUI ATCGAT 1 cut(s) 723
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 90, 107
CciI TCATGA 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 133, 257
ClaI ATCGAT 1 cut(s) 723
Csp6I GTAC 5 cut(s) 113, 191, 597, 656, 742
CviAII CATG 4 cut(s) 158, 166, 199, 484
CviJI RGCY 9 cut(s) 24, 42, 92, 105, 332, 373, 446, 529, 715
CviKI_1 RGCY 9 cut(s) 24, 42, 92, 105, 332, 373, 446, 529, 715
CviQI GTAC 5 cut(s) 113, 191, 597, 656, 742
DdeI CTNAG 2 cut(s) 93, 565
DpnI GATC 2 cut(s) 265, 726
DpnII GATC 2 cut(s) 263, 724
DraI TTTAAA 1 cut(s) 412
DriI GACNNNNNGTC 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 516
Eam1105I GACNNNNNGTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 516
Eco147I AGGCCT 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 570
Eco47I GGWCC 2 cut(s) 133, 257
EcoO109I RGGNCCY 1 cut(s) 133
FaeI CATG 4 cut(s) 161, 169, 202, 487
FaqI GGGAC 2 cut(s) 146, 243
FatI CATG 4 cut(s) 157, 165, 198, 483
FauI CCCGC 1 cut(s) 651
FauNDI CATATG 2 cut(s) 349, 652
Fnu4HI GCNGC 4 cut(s) 345, 527, 703, 706
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 345, 527, 703, 706
GluI GCNGC 4 cut(s) 345, 527, 703, 706
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 261
Hin1II CATG 4 cut(s) 161, 169, 202, 487
HinfI GANTC 2 cut(s) 11, 305
HpaII CCGG 1 cut(s) 261
Hpy188I TCNGA 3 cut(s) 151, 513, 568
Hpy188III TCNNGA 8 cut(s) 73, 182, 217, 267, 484, 666, 686, 728
HpyAV CCTTC 2 cut(s) 384, 663
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 7 cut(s) 8, 88, 290, 311, 353, 396, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 350, 452
HpyF3I CTNAG 2 cut(s) 93, 565
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 4 cut(s) 161, 169, 202, 487
Kzo9I GATC 2 cut(s) 263, 724
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 534
Lsp1109I GCAGC 4 cut(s) 356, 538, 714, 717
LweI GCATC 1 cut(s) 508
MaeII ACGT 1 cut(s) 210
MalI GATC 2 cut(s) 265, 726
MboI GATC 2 cut(s) 263, 724
MboII GAAGA 2 cut(s) 533, 626
MfeI CAATTG 3 cut(s) 27, 98, 391
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 6 cut(s) 223, 251, 536, 541, 583, 682
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 261
MunI CAATTG 3 cut(s) 27, 98, 391
MwoI GCNNNNNNNGC 3 cut(s) 94, 350, 452
NciI CCSGG 1 cut(s) 261
NdeI CATATG 2 cut(s) 349, 652
NdeII GATC 2 cut(s) 263, 724
NlaIII CATG 4 cut(s) 161, 169, 202, 487
NlaIV GGNNCC 2 cut(s) 134, 259
NspI RCATGY 1 cut(s) 161
PagI TCATGA 1 cut(s) 483
PceI AGGCCT 1 cut(s) 373
PciI ACATGT 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 11, 305
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 4 cut(s) 346, 528, 704, 707
Ppu21I YACGTR 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 133
PscI ACATGT 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 134, 259
PspPI GGNCC 2 cut(s) 133, 257
PspPPI RGGWCCY 1 cut(s) 133
RsaI GTAC 5 cut(s) 114, 192, 598, 657, 743
RsaNI GTAC 5 cut(s) 113, 191, 597, 656, 742
RseI CAYNNNNRTG 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 4 cut(s) 345, 527, 703, 706
Sau3AI GATC 2 cut(s) 263, 724
Sau96I GGNCC 2 cut(s) 133, 257
ScaI AGTACT 1 cut(s) 743
ScrFI CCNGG 1 cut(s) 261
SfaNI GCATC 1 cut(s) 508
SinI GGWCC 2 cut(s) 133, 257
SmiMI CAYNNNNRTG 1 cut(s) 651
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 1 cut(s) 644
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 317, 723
TatI WGTACW 4 cut(s) 190, 596, 655, 741
TfiI GAWTC 2 cut(s) 11, 305
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseI GCWGC 4 cut(s) 344, 526, 702, 705
TspDTI ATGAA 7 cut(s) 168, 189, 372, 500, 574, 651, 738
TspGWI ACGGA 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 133, 257
XapI RAATTY 2 cut(s) 536, 731
XceI RCATGY 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.