Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010857

Physical Location & Seq

Genomic Coordinates Reverse (-)

22361911 .. 22364181

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1144400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAGGATTCAAAGAGAACCCTTCTGAGATCCACAGTTTCCCTGTCATGAATGTTCTATGTCCGATGAAGAAAAGAAAATTTCACGGTGAGCAATTGGGCTTGCCAATAACAAAGAACAGGTGCTTGGAACGAGTATTTCCATCTGATAAATCCATCTCCATGTTTGATGAAAACCTTGAAGTAAAGAACATGATAAAACAGACACTGAAGAGAAAGATAGACGGGGCATCCCTGGATGACGGGTCTGAACCTGATTCGGGAAGAGGTAGCAACAGTTTCGTTGGAGATTCTGATTCTGCAACGTCGGTTTATGGTGATACAAAACTTGGACCCGTGTATGCACAGACATGCCAATATGATAGGCCTTCCACTTCATCAGCGAACGGCATCAGCCATAGTGCAGATGAACTAAAATATGCGAACGGAGACCATCAACCTATGGATCCTCATGGTGAAATACAAGAATTTCAGAATCTTGAAGAGCACATCCAGGAATTTGGAGACCAGGTGGATTACATTTTCGCAGAATATGGAGATGACTGCATTGAGCAATGTGTGGACGCGGGTTACGAAGATCTCATCCACCCGAACGGTTTGAACCCGAACACATATGTACTTTCATCGGGAAGATGGAATGTGAACCAAGATAATTCAGAGGCTGAATCAGGCAGCAGCAGGAAGCCAACCATCGATCAAGAATTCGAGCAGTATTTTTCCTCCCTAATGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008104 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045185 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051235 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0072595 GO:0080090 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.31

Weight (kDa)

4.56

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37678 AT2G37678
fragaria_vesca	FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica	MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica	Prupe.6G257800_v2.0.a1
pyrus_communis	pycom04g11950 pycom12g13890
rosa_chinensis	RchiOBHm_Chr3g0466291
rosa_laevigata	RLG00000024589
rosa_multiflora	Rmu_co8473877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414630
rosa_rugosa	Rorug03G0080800
rosa_samantha	Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana	Rw3G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	566
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	3 cut(s)	25, 440, 453
AcsI	RAATTY	4 cut(s)	80, 467, 497, 701
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	13, 182, 482, 601
AjnI	CCWGG	3 cut(s)	234, 492, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	423, 498
AlwI	GGATC	3 cut(s)	25, 440, 453
AlwNI	CAGNNNCTG	2 cut(s)	208, 662
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	672, 675
ApoI	RAATTY	4 cut(s)	80, 467, 497, 701
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	101, 329, 467
AvaII	GGWCC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	684, 687
BccI	CCATC	5 cut(s)	151, 164, 441, 627, 698
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	3 cut(s)	236, 494, 509
BcoDI	GTCTC	2 cut(s)	423, 498
BfmI	CTRYAG	1 cut(s)	731
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	2 cut(s)	673, 676
BlsI	GCNGC	2 cut(s)	674, 677
Bme1390I	CCNGG	3 cut(s)	236, 494, 509
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	334, 447
BmrFI	CCNGG	3 cut(s)	236, 494, 509
BmsI	GCATC	2 cut(s)	239, 399
Bsa29I	ATCGAT	1 cut(s)	693
BsaI	GGTCTC	2 cut(s)	423, 498
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	236, 494, 509
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	4 cut(s)	230, 244, 489, 582
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	684, 687
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	367
BshVI	ATCGAT	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	423, 498
BsnI	GGCC	1 cut(s)	367
Bso31I	GGTCTC	2 cut(s)	423, 498
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	30, 445, 577, 694
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	1 cut(s)	19
BspDI	ATCGAT	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	334, 447
BspPI	GGATC	3 cut(s)	25, 440, 453
BspQI	GCTCTTC	1 cut(s)	477
BspTNI	GGTCTC	2 cut(s)	423, 498
BsrDI	GCAATG	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	4 cut(s)	30, 445, 577, 694
Bst2UI	CCWGG	3 cut(s)	236, 494, 509
Bst4CI	ACNGT	4 cut(s)	38, 89, 278, 596
Bst6I	CTCTTC	3 cut(s)	206, 259, 477
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	230, 244, 489, 582
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	4 cut(s)	33, 448, 580, 697
BstMAI	GTCTC	2 cut(s)	423, 498
BstMBI	GATC	4 cut(s)	30, 445, 577, 694
BstNI	CCWGG	3 cut(s)	236, 494, 509
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	3 cut(s)	234, 492, 507
BstSFI	CTRYAG	1 cut(s)	731
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	684, 687
BstX2I	RGATCY	3 cut(s)	30, 445, 577
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	3 cut(s)	30, 445, 577
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	367
BsuTUI	ATCGAT	1 cut(s)	693
BtsCI	GGATG	4 cut(s)	230, 244, 489, 582
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	2 cut(s)	208, 662
CciI	TCATGA	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	332
ClaI	ATCGAT	1 cut(s)	693
CseI	GACGC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	5 cut(s)	49, 163, 193, 351, 452
CviJI	RGCY	5 cut(s)	102, 367, 396, 662, 685
CviKI_1	RGCY	5 cut(s)	102, 367, 396, 662, 685
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	4 cut(s)	32, 447, 579, 696
DpnII	GATC	4 cut(s)	30, 445, 577, 694
Eam1104I	CTCTTC	3 cut(s)	206, 259, 477
EarI	CTCTTC	3 cut(s)	206, 259, 477
Eco147I	AGGCCT	1 cut(s)	367
Eco31I	GGTCTC	2 cut(s)	423, 498
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	3 cut(s)	234, 492, 507
FaeI	CATG	5 cut(s)	52, 166, 196, 354, 455
FatI	CATG	5 cut(s)	48, 162, 192, 350, 451
FauI	CCCGC	1 cut(s)	559
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	673, 676
FokI	GGATG	4 cut(s)	217, 251, 476, 569
Fsp4HI	GCNGC	2 cut(s)	673, 676
GluI	GCNGC	2 cut(s)	673, 676
HaeIII	GGCC	1 cut(s)	367
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	5 cut(s)	52, 166, 196, 354, 455
HinfI	GANTC	6 cut(s)	9, 257, 290, 296, 475, 665
HphI	GGTGA	3 cut(s)	101, 329, 467
Hpy166II	GTNNAC	2 cut(s)	562, 643
Hpy188I	TCNGA	7 cut(s)	28, 66, 148, 250, 295, 474, 658
Hpy188III	TCNNGA	5 cut(s)	49, 261, 479, 627, 698
Hpy8I	GTNNAC	2 cut(s)	562, 643
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	33, 378
HpyCH4III	ACNGT	4 cut(s)	38, 89, 278, 596
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	302, 344, 404, 546
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	5 cut(s)	52, 166, 196, 354, 455
Kzo9I	GATC	4 cut(s)	30, 445, 577, 694
LguI	GCTCTTC	1 cut(s)	477
Lsp1109I	GCAGC	2 cut(s)	684, 687
LweI	GCATC	2 cut(s)	239, 399
MabI	ACCWGGT	1 cut(s)	507
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	4 cut(s)	32, 447, 579, 696
MboI	GATC	4 cut(s)	30, 445, 577, 694
MboII	GAAGA	6 cut(s)	82, 223, 276, 494, 587, 642
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	3 cut(s)	30, 445, 577
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	6 cut(s)	80, 95, 467, 497, 652, 701
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	260, 459, 652, 730
MslI	CAYNNNNRTG	2 cut(s)	161, 349
MspR9I	CCNGG	3 cut(s)	236, 494, 509
MunI	CAATTG	1 cut(s)	95
MvaI	CCWGG	3 cut(s)	236, 494, 509
MvnI	CGCG	1 cut(s)	566
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	4 cut(s)	30, 445, 577, 694
NlaIII	CATG	5 cut(s)	52, 166, 196, 354, 455
NlaIV	GGNNCC	2 cut(s)	334, 447
NspI	RCATGY	1 cut(s)	354
PagI	TCATGA	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PfeI	GAWTC	6 cut(s)	9, 257, 290, 296, 475, 665
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	674, 677
Psp6I	CCWGG	3 cut(s)	234, 492, 507
PspGI	CCWGG	3 cut(s)	234, 492, 507
PspN4I	GGNNCC	2 cut(s)	334, 447
PspPI	GGNCC	1 cut(s)	332
PstNI	CAGNNNCTG	2 cut(s)	208, 662
PsuI	RGATCY	3 cut(s)	30, 445, 577
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	2 cut(s)	161, 349
SapI	GCTCTTC	1 cut(s)	477
SatI	GCNGC	2 cut(s)	673, 676
Sau3AI	GATC	4 cut(s)	30, 445, 577, 694
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	236, 494, 509
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	7 cut(s)	125, 180, 256, 271, 308, 442, 513
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	2 cut(s)	239, 399
SfcI	CTRYAG	1 cut(s)	731
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	161, 349
Sse9I	AATT	6 cut(s)	80, 95, 467, 497, 652, 701
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	367
StyD4I	CCNGG	3 cut(s)	234, 492, 507
TaaI	ACNGT	4 cut(s)	38, 89, 278, 596
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	693, 705
TasI	AATT	6 cut(s)	80, 95, 467, 497, 652, 701
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	6 cut(s)	9, 257, 290, 296, 475, 665
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	2 cut(s)	672, 675
TspDTI	ATGAA	6 cut(s)	65, 83, 186, 366, 423, 612
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	4 cut(s)	80, 467, 497, 701
XceI	RCATGY	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.