Prupe.6G257800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010857
Physical Location & Seq
Reverse (-)
25002530 .. 25004537
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G257800.1

Sequence Viewer

Length: 696 bp
ATGGAGACCTACGAGGAAAACCCATCTCAAATCGACAGCTCACATGTCATGAGTGTTCTGAAGAGGATCAAGAAAAGAAAATTCCAGGCCGAGCAATTGGGCTTGCCAATACCAAAGCATAAATGCTGGGAACGAATTTTTCCTTCTGATGAACCTGTCTCCATGTTTGATGAAAATCCGGAAGTAAAGAACATGCAGACATGTGCAACGAAGGGAAAAGTAGAGAGAGTGATCCTGGATGGTGGGTCTGAATCTGAATCAGGAAAAGGTAGCAACAGTTTTGCTGGAGATTCTGATTCTGCAACATCGGTATATGTTGAAGCTAAACTAGAACCGGTGTATGCAATGGCATGCCTAAATGACAGGCCTTCCACTTCATATGTGAATGAAGTGCATCAACCTACATATCCTGATGGTGAAATACAAGCATTTGAGAATTATGACGAGCACCTCCAAGAATTTGGAAACCAGGTGGATTACATTTTCTCAGAATATGGAGATGACTGCATTGAGCAGTGTAAAGACAAGGAATTTGAAGATGTTATATACCCCATTGGTTCGAACACAAATAAATACATACTTTCATCTGGAAGATGGAGTGTGAATCAAGATAATTCAGACGTTCAATCAGCTAGCAAGAGGAAGCCAACCATTGATCAAGAATTCGAGCAGTATTTTTCCACGCTGATGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.3

Weight (kDa)

4.58

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37678 AT2G37678
fragaria_vesca FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica Prupe.6G257800_v2.0.a1
pyrus_communis pycom04g11950 pycom12g13890
rosa_chinensis RchiOBHm_Chr3g0466291
rosa_laevigata RLG00000024589
rosa_multiflora Rmu_co8473877.1_g000001
rosa_roxburghii Rroxscaffold_6G00414630
rosa_rugosa Rorug03G0080800
rosa_samantha Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana Rw3G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 178
AclWI GGATC 2 cut(s) 74, 226
AcsI RAATTY 5 cut(s) 80, 135, 458, 530, 662
AcuI CTGAAG 1 cut(s) 80
AflIII ACRYGT 2 cut(s) 43, 200
AgeI ACCGGT 1 cut(s) 334
AgsI TTSAA 3 cut(s) 320, 536, 626
AjnI CCWGG 3 cut(s) 84, 234, 468
AluBI AGCT 3 cut(s) 39, 323, 632
AluI AGCT 3 cut(s) 39, 323, 632
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 2 cut(s) 74, 226
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 2 cut(s) 87, 365
ApoI RAATTY 5 cut(s) 80, 135, 458, 530, 662
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AsiGI ACCGGT 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 428
AsuII TTCGAA 1 cut(s) 560
AsuNHI GCTAGC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 450
BccI CCATC 4 cut(s) 31, 233, 407, 588
BciT130I CCWGG 3 cut(s) 86, 236, 470
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 2 cut(s) 329, 633
BfmI CTRYAG 1 cut(s) 692
Bme1390I CCNGG 3 cut(s) 86, 236, 470
BmrFI CCNGG 3 cut(s) 86, 236, 470
BmsI GCATC 2 cut(s) 403, 678
BmtI GCTAGC 1 cut(s) 636
BpmI CTGGAG 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 174
BsaWI WCCGGW 2 cut(s) 178, 334
Bse118I RCCGGY 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 3 cut(s) 86, 236, 470
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 174
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 501
BseYI CCCAGC 1 cut(s) 126
BshFI GGCC 2 cut(s) 89, 367
BshTI ACCGGT 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 2 cut(s) 179, 335
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 89, 367
Bsp119I TTCGAA 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 450
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 3 cut(s) 66, 231, 655
BspANI GGCC 2 cut(s) 89, 367
BspCNI CTCAG 1 cut(s) 500
BspEI TCCGGA 1 cut(s) 178
BspHI TCATGA 1 cut(s) 48
BspOI GCTAGC 1 cut(s) 636
BspPI GGATC 2 cut(s) 74, 226
BspT104I TTCGAA 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 334
BssMI GATC 3 cut(s) 66, 231, 655
Bst2UI CCWGG 3 cut(s) 86, 236, 470
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 104, 352, 634
BstDEI CTNAG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 3 cut(s) 69, 234, 658
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 3 cut(s) 66, 231, 655
BstNI CCWGG 3 cut(s) 86, 236, 470
BstNSI RCATGY 4 cut(s) 47, 196, 204, 354
BstSCI CCNGG 3 cut(s) 84, 234, 468
BstSFI CTRYAG 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 461
BsuRI GGCC 2 cut(s) 89, 367
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 3 cut(s) 104, 352, 634
CciI TCATGA 1 cut(s) 48
Cfr10I RCCGGY 1 cut(s) 334
CsiI ACCWGGT 1 cut(s) 468
CspAI ACCGGT 1 cut(s) 334
CviAII CATG 6 cut(s) 44, 49, 163, 193, 201, 351
CviJI RGCY 7 cut(s) 39, 89, 102, 323, 367, 632, 646
CviKI_1 RGCY 7 cut(s) 39, 89, 102, 323, 367, 632, 646
DdeI CTNAG 1 cut(s) 487
DpnI GATC 3 cut(s) 68, 233, 657
DpnII GATC 3 cut(s) 66, 231, 655
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco147I AGGCCT 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 662
EcoRII CCWGG 3 cut(s) 84, 234, 468
FaeI CATG 6 cut(s) 47, 52, 166, 196, 204, 354
FatI CATG 6 cut(s) 43, 48, 162, 192, 200, 350
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 655
FokI GGATG 1 cut(s) 251
FspBI CTAG 2 cut(s) 329, 633
GsaI CCCAGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 2 cut(s) 89, 367
HapII CCGG 2 cut(s) 179, 335
Hin1II CATG 6 cut(s) 47, 52, 166, 196, 204, 354
HinfI GANTC 5 cut(s) 251, 257, 290, 296, 604
HpaII CCGG 2 cut(s) 179, 335
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 7 cut(s) 60, 148, 250, 256, 295, 490, 619
Hpy188III TCNNGA 8 cut(s) 49, 70, 179, 261, 410, 588, 608, 659
HpyAV CCTTC 3 cut(s) 153, 205, 378
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 6 cut(s) 196, 206, 302, 344, 394, 507
HpyF3I CTNAG 1 cut(s) 487
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 6 cut(s) 47, 52, 166, 196, 204, 354
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 3 cut(s) 66, 231, 655
LweI GCATC 2 cut(s) 403, 678
MabI ACCWGGT 1 cut(s) 468
MaeI CTAG 2 cut(s) 329, 633
MaeII ACGT 1 cut(s) 621
MalI GATC 3 cut(s) 68, 233, 657
MboI GATC 3 cut(s) 66, 231, 655
MboII GAAGA 3 cut(s) 73, 548, 603
MfeI CAATTG 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 8 cut(s) 80, 95, 135, 436, 458, 530, 613, 662
MnlI CCTC 4 cut(s) 7, 57, 461, 633
MroI TCCGGA 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 686
MspI CCGG 2 cut(s) 179, 335
MspR9I CCNGG 3 cut(s) 86, 236, 470
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 3 cut(s) 86, 236, 470
NdeI CATATG 1 cut(s) 379
NdeII GATC 3 cut(s) 66, 231, 655
NheI GCTAGC 1 cut(s) 632
NlaIII CATG 6 cut(s) 47, 52, 166, 196, 204, 354
NmeAIII GCCGAG 1 cut(s) 115
NspI RCATGY 4 cut(s) 47, 196, 204, 354
NspV TTCGAA 1 cut(s) 560
PaeI GCATGC 1 cut(s) 354
PagI TCATGA 1 cut(s) 48
PceI AGGCCT 1 cut(s) 367
PciI ACATGT 2 cut(s) 43, 200
PfeI GAWTC 5 cut(s) 251, 257, 290, 296, 604
PfoI TCCNGGA 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 334
PscI ACATGT 2 cut(s) 43, 200
Psp6I CCWGG 3 cut(s) 84, 234, 468
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 3 cut(s) 84, 234, 468
RseI CAYNNNNRTG 1 cut(s) 686
Sau3AI GATC 3 cut(s) 66, 231, 655
ScrFI CCNGG 3 cut(s) 86, 236, 470
SduI GDGCHC 1 cut(s) 450
SexAI ACCWGGT 1 cut(s) 468
SfaNI GCATC 2 cut(s) 403, 678
SfcI CTRYAG 1 cut(s) 692
SfuI TTCGAA 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 686
SphI GCATGC 1 cut(s) 354
Sse9I AATT 8 cut(s) 80, 95, 135, 436, 458, 530, 613, 662
SseBI AGGCCT 1 cut(s) 367
SspMI CTAG 2 cut(s) 329, 633
StuI AGGCCT 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 84, 234, 468
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 624
TaqI TCGA 3 cut(s) 33, 560, 666
TasI AATT 8 cut(s) 80, 95, 135, 436, 458, 530, 613, 662
TfiI GAWTC 5 cut(s) 251, 257, 290, 296, 604
TscAI CASTG 1 cut(s) 521
TspDTI ATGAA 5 cut(s) 165, 186, 366, 402, 573
TspRI CASTG 1 cut(s) 521
XapI RAATTY 5 cut(s) 80, 135, 458, 530, 662
XceI RCATGY 4 cut(s) 47, 196, 204, 354
XspI CTAG 2 cut(s) 329, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.