Rmu_co8473877.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8473877.1
OG0010857
Physical Location & Seq
Forward (+)
1 .. 1716
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8473877.1_g000001.1.cds

Sequence Viewer

Length: 724 bp
cttccctgtcattgaagttggaaggacaatcaagaaaagaaaattgcaggccgagcaattgggcttgcctgtacccaagcacaaatgctgggacctgaactttccgtctgatgaacatgtctccatgtttgatgaaaatcctgaccaagtacagaacatgcagacacacgtagtcaagagagaaatagagggagcattcctcaatgacgggtctggtcccggatcgggaaaaggtagcaatagttttgcaggagattactgtgattctgcaatgtcggtttatagtgaagctgaactaaacgcagcatatgcaaagaacatatatgataggccttccacttcatctgtcaattgcaatgtcaatatttttaaagataccgacagcagtttggacactctgtcagctatggaagcaaattatagccaagcagaattagaactcatgaatgtagaagtgcatcaacctattcagaaccatgaagagcagctccaagaatttggaggcgaggcaaattacatctgctcagaatatggagaccacttcattgaggaatgtacagataaggaagttgaagatattatctactccaattctctgaacccgcatacatatgtactttcatctggaaggtggagtgtaaatcaagaggctcaatcaggcagcagcaggaagccaaccatcgatcaagaatttgagcagtacttttcatcgcttatgctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.95

Weight (kDa)

4.51

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37678 AT2G37678
fragaria_vesca FvH4_6g13420 FvH4_6g13420 FvH4_6g13420 FvH4_6g13420
malus_domestica MD04G1131300.v1.1 MD12G1144400.v1.1
prunus_persica Prupe.6G257800_v2.0.a1
pyrus_communis pycom04g11950 pycom12g13890
rosa_chinensis RchiOBHm_Chr3g0466291
rosa_laevigata RLG00000024589
rosa_multiflora Rmu_co8473877.1_g000001
rosa_roxburghii Rroxscaffold_6G00414630
rosa_rugosa Rorug03G0080800
rosa_samantha Rh3AG127100 Rh3BG148400 Rh3DG149100
rosa_wichuraiana Rw3G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 603
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 2 cut(s) 495, 690
AfaI GTAC 5 cut(s) 73, 151, 557, 616, 702
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 2 cut(s) 116, 167
AgsI TTSAA 2 cut(s) 15, 573
AhdI GACNNNNNGTC 1 cut(s) 398
AluBI AGCT 3 cut(s) 291, 405, 488
AluI AGCT 3 cut(s) 291, 405, 488
Alw26I GTCTC 2 cut(s) 125, 529
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 49, 330
ApeKI GCWGC 4 cut(s) 303, 485, 661, 664
ApoI RAATTY 2 cut(s) 495, 690
AspS9I GGNCC 2 cut(s) 92, 216
AsuC2I CCSGG 1 cut(s) 220
AvaII GGWCC 2 cut(s) 92, 216
BbvI GCAGC 4 cut(s) 315, 497, 673, 676
BccI CCATC 1 cut(s) 687
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 125, 529
BisI GCNGC 4 cut(s) 304, 486, 662, 665
BlsI GCNGC 4 cut(s) 305, 487, 663, 666
BmcAI AGTACT 1 cut(s) 702
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 2 cut(s) 92, 216
BmeRI GACNNNNNGTC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 92, 216
BmiI GGNNCC 2 cut(s) 93, 218
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 184, 216
BpuMI CCSGG 1 cut(s) 220
Bsa29I ATCGAT 1 cut(s) 682
BsaAI YACGTR 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 529
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse3DI GCAATG 2 cut(s) 277, 362
Bse8I GATNNNNATC 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 682
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 2 cut(s) 277, 362
BseMII CTCAG 1 cut(s) 538
BseXI GCAGC 4 cut(s) 315, 497, 673, 676
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 51, 332
BshVI ATCGAT 1 cut(s) 682
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 2 cut(s) 105, 202
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 125, 529
BsmFI GGGAC 2 cut(s) 105, 202
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 2 cut(s) 51, 332
Bso31I GGTCTC 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 2 cut(s) 222, 683
BspACI CCGC 1 cut(s) 603
BspANI GGCC 2 cut(s) 51, 332
BspCNI CTCAG 1 cut(s) 537
BspDI ATCGAT 1 cut(s) 682
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 93, 218
BspPI GGATC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 529
BsrDI GCAATG 2 cut(s) 277, 362
BsrGI TGTACA 1 cut(s) 555
BssMI GATC 2 cut(s) 222, 683
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 555
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 49, 66
BstDEI CTNAG 1 cut(s) 524
BstKTI GATC 2 cut(s) 225, 686
BstMAI GTCTC 2 cut(s) 125, 529
BstMBI GATC 2 cut(s) 222, 683
BstMWI GCNNNNNNNGC 3 cut(s) 53, 309, 411
BstNSI RCATGY 2 cut(s) 120, 161
BstSCI CCNGG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 315, 497, 673, 676
BstXI CCANNNNNNTGG 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 682
BsuRI GGCC 2 cut(s) 51, 332
BsuTUI ATCGAT 1 cut(s) 682
BtgZI GCGATG 1 cut(s) 694
Cac8I GCNNGC 2 cut(s) 49, 66
CciI TCATGA 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 92, 216
ClaI ATCGAT 1 cut(s) 682
Csp6I GTAC 5 cut(s) 72, 150, 556, 615, 701
CviAII CATG 5 cut(s) 117, 125, 158, 443, 477
CviJI RGCY 9 cut(s) 51, 64, 291, 332, 405, 424, 488, 651, 674
CviKI_1 RGCY 9 cut(s) 51, 64, 291, 332, 405, 424, 488, 651, 674
CviQI GTAC 5 cut(s) 72, 150, 556, 615, 701
DdeI CTNAG 1 cut(s) 524
DpnI GATC 2 cut(s) 224, 685
DpnII GATC 2 cut(s) 222, 683
DraI TTTAAA 1 cut(s) 371
DriI GACNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 475
Eam1105I GACNNNNNGTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 475
Eco147I AGGCCT 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 92, 216
EcoO109I RGGNCCY 1 cut(s) 92
FaeI CATG 5 cut(s) 120, 128, 161, 446, 480
FaqI GGGAC 2 cut(s) 105, 202
FatI CATG 5 cut(s) 116, 124, 157, 442, 476
FauI CCCGC 1 cut(s) 610
FauNDI CATATG 2 cut(s) 308, 611
Fnu4HI GCNGC 4 cut(s) 304, 486, 662, 665
Fsp4HI GCNGC 4 cut(s) 304, 486, 662, 665
GluI GCNGC 4 cut(s) 304, 486, 662, 665
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 2 cut(s) 51, 332
HapII CCGG 1 cut(s) 220
Hin1II CATG 5 cut(s) 120, 128, 161, 446, 480
HinfI GANTC 1 cut(s) 264
HpaII CCGG 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 110, 472, 527, 598
Hpy188III TCNNGA 8 cut(s) 32, 141, 176, 226, 443, 625, 645, 687
HpyAV CCTTC 3 cut(s) 16, 343, 622
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 7 cut(s) 47, 161, 249, 270, 312, 355, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 309, 411
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 5 cut(s) 120, 128, 161, 446, 480
Kzo9I GATC 2 cut(s) 222, 683
LguI GCTCTTC 1 cut(s) 475
LmnI GCTCC 2 cut(s) 192, 493
Lsp1109I GCAGC 4 cut(s) 315, 497, 673, 676
LweI GCATC 1 cut(s) 467
MaeII ACGT 1 cut(s) 169
MalI GATC 2 cut(s) 224, 685
MboI GATC 2 cut(s) 222, 683
MboII GAAGA 2 cut(s) 492, 585
MfeI CAATTG 2 cut(s) 57, 350
MluCI AATT 9 cut(s) 42, 57, 350, 416, 432, 495, 512, 590, 690
MnlI CCTC 6 cut(s) 182, 210, 495, 500, 542, 641
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 610
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 220
MunI CAATTG 2 cut(s) 57, 350
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 53, 309, 411
NciI CCSGG 1 cut(s) 220
NdeI CATATG 2 cut(s) 308, 611
NdeII GATC 2 cut(s) 222, 683
NlaIII CATG 5 cut(s) 120, 128, 161, 446, 480
NlaIV GGNNCC 2 cut(s) 93, 218
NmeAIII GCCGAG 1 cut(s) 77
NspI RCATGY 2 cut(s) 120, 161
PagI TCATGA 1 cut(s) 442
PceI AGGCCT 1 cut(s) 332
PciI ACATGT 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 475
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 218
PkrI GCNGC 4 cut(s) 305, 487, 663, 666
Ppu21I YACGTR 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 92
PscI ACATGT 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 93, 218
PspPI GGNCC 2 cut(s) 92, 216
PspPPI RGGWCCY 1 cut(s) 92
RsaI GTAC 5 cut(s) 73, 151, 557, 616, 702
RsaNI GTAC 5 cut(s) 72, 150, 556, 615, 701
RseI CAYNNNNRTG 1 cut(s) 610
SapI GCTCTTC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 4 cut(s) 304, 486, 662, 665
Sau3AI GATC 2 cut(s) 222, 683
Sau96I GGNCC 2 cut(s) 92, 216
ScaI AGTACT 1 cut(s) 702
ScrFI CCNGG 1 cut(s) 220
SetI ASST 8 cut(s) 97, 172, 236, 293, 407, 467, 490, 633
SfaNI GCATC 1 cut(s) 467
SinI GGWCC 2 cut(s) 92, 216
SmiMI CAYNNNNRTG 1 cut(s) 610
Sse9I AATT 9 cut(s) 42, 57, 350, 416, 432, 495, 512, 590, 690
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 1 cut(s) 603
SspI AATATT 1 cut(s) 365
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 682
TasI AATT 9 cut(s) 42, 57, 350, 416, 432, 495, 512, 590, 690
TatI WGTACW 4 cut(s) 149, 555, 614, 700
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TseI GCWGC 4 cut(s) 303, 485, 661, 664
TspDTI ATGAA 8 cut(s) 127, 148, 331, 459, 493, 533, 610, 697
TspGWI ACGGA 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 92, 216
XapI RAATTY 2 cut(s) 495, 690
XceI RCATGY 2 cut(s) 120, 161
ZrmI AGTACT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.