FvH4_6g15190

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014760
Physical Location & Seq
Reverse (-)
9433606 .. 9438148
4543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15190.t1

Sequence Viewer

Length: 2745 bp
ATGTTCCTCAAGAGTAATGTTGCTCTTACTTTGGAGTTTGGGGCCAACGGGCAACCAGCTGAACGGACGGATTTGAAATACAAATACCAATCCAACGGCGCCAGAAGCCACGTCAGTGACACTCAGACGCGCACAAAAACAAAAGCACAGAGAGCAAGGGAGAGAGAAACTCCAAACCAAAAAGCTCGGCCAACAAATCCAAAGAAACCTCAAAAAAGCCTCTCTGCTTTTGCTTCTCTCATTTTATCTTATCCTGCGATTTGCAGCCTCTTCTTCTTCCTCTGCTACTCTCTCACTCTCACTCTCTCTCTGGAAGCCATGAGTGACGTCGGAGAACAGACGTGTCCGATTTGCGCCGAGGAGATGGATTTGACCGATCAGCAGCTCAAGCCCTGCGATTGTGGCTATGAGGTGTGTCTGTGGTGCTGGAACCACATTATGGAAATGGCGGAGAAGGATGGGAGGGAAGGGCGGTGTCCACTGTGCCGATCACCTTACGACAAAGAGAAGATTATGAGGGTGGCAGCAGACTGTAAAACAATGTTGGTGACTGAAGTTAATCAGAAGCGGAAACAGAAGAAGCCTCCCAAAGGACCTGAAGCAAAGAAGCTTCTAACTGATGTTAGAGTTCTCCAGCGGAATCTAGCTTACATAATTGGATTGCCTCTTAACCTTGCAAAAGAAGAGCTTCTTAAGCGAAGGGACTATTTTGGCCAGTATGGAAAGGTGTTGAAGGTCTCTATTTCTCGTACATCGACTGGGGATATTCAGCATGCTACGAACAATAGCTGTTGTGTGTATATAACTTACTCAAGTGAATATGAAGCAGCTCGATGTATTCAATCGGTGCACAGTTTTGTATTAGATGGTAATTCTTTGAGAGCATGTTTTGGAACAACAAAGTACTGCCATGCATGGTTGAAAAATGTGCCTTGTAGCAATGCAGATTGTATGTATCTTCATGATTTTGGCTCTCAGGAAGATAGTTTTTCCAAAGATGAACTGGTTTCGGCCTTTGAAAGGAGTAAAGATTTACAGATTATCGGTGTTACAAATAATCTGCATCAGCGTCCAGGAAAAGGGTTACCTCCACCAGTGGATGAGAATAACAAATCAAAAATATTATCTGCAGCTAAACCACTTGTCAATCATCCTATAAATATCACTAGGGATGAGTTTAAGGGATGTTGTGCAGATGAAGACTCTAGAAGAGCTACTCCTGCAAGAACTTCTTGGGTCGTGCAGGTTGCCCCTAGTGTACCCCTGGGAACAAGTGCTGAAATGACTCTCTATCAAAAGCCTGAGACGTCTAATGATGTTCATGCCTTGAAAGTTGCGAGCTCTGAAAGTTCTAATTACGGAGTAAGATCTATTACATCTGAAGATAGCTGTGAAGTGCATTTTAATAGTTTGGATCCGTTGGTACTGACTAAACAGAATAGTGAAGAAAATGTTGAAATAGCTGTATCGAATAAACCCGTGGAAGCCTTTGTAGATAGCACTCTTGTAGATTTAACTTCGAGGCATTGTCTATCACCAGATAATGGTGTTGGTCGAGATATTGAATCCGTCGACTTTATAAGCAGCAGAAACTTAAATTGTCTATCATCAAACTTATCCATAAGTTCATGTGATGACAAAGGAACTAGCGTTGCTACATTTGATCCTTCCTGTGTGTTACCAAATATGGAATTAGGGAAGTACTTGGAAGGGTTCGAAAACAATAAAGCCAGTATGGACCGCAATCTTTCTTCAGATATAGGGGAGAGTGGCATAATCTCAAATATTTTGATGATGAATTTGGATGCACCTGAAGGTTCTTTAACTGAGCTTCATAATCTGGTTAATTTGTTGGGTGAAACTGATAAAGAATGCAGTCTTCTCAGAGTACCAAGTTTACGCAAAATGCCAGAGAAAAAGCAGTCCAGGTTCTCATTTGCCCAGCAAGAGGATTCTTCTGATAATATATGGCATCCGCCCAAGGACTACTCTTCTTTATCTGATTTAAACAAGGATTCTTTCATACATGTGGAGTCTTCAAATCTTCCCAGGAGCCATTCTTTTTTGTCTCCTAAAGCTTCAGCTACAGAGGTGCCTAATTCGATCCCACCAGGATTTTCAATACCAAGAAGGGCATCACCACCCGGTTTTTCTTCTCATGGGAGATCTAGGAGGGGGGACCAGGCATTTGACAGTTTTGTGAATCAATCGGTGCAGCCATCTGTTATGCCCACTGGTTATCCTGGCATCACTGGCGATGCTGAGCTCTTTGAGCCATCAAGTTTCGATATTGGTAATGGTATATTGGAGAGAGGGAGAGCGACGTTATCACAGTATAATTCTTCTCAGCCAGATGCAAGGCTCCATATGATGAGACAGCAGTCAACTCTTACACAGCAAAGCTTAGGATTTCATGACCATTTCAGGAATACATACTCTTCCTTGAATGATGGACGACTACTTTCTCCACAAAATCCAAATCAATTTCAATCCAATCCATCTATATTCACACAGTCCAATCCATCTATATTCGCACAGTCCACCCCTCAACAGGTCAGTGATGTGCTAGTATCAAATAGTCATTGGGGTCAATGGAATGGGGTCAAGAGTGCAAGTGATTTAGGAATATCAGAATTGCTGAGAAATGAGAGACTGGGATATAACAAATTCATTCCCTATTATGAAGATTCGAAGACTCAGTCAAGTTACTTTAGCAATCTAAGCAGCAAAGGGTTTGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

915

Amino Acids

101.6

Weight (kDa)

6.32

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 115 - 167 8.8e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014760)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15190
malus_domestica MD12G1125800.v1.1
prunus_persica Prupe.6G242300_v2.0.a1 Prupe.6G242300_v2.0.a1
pyrus_communis pycom12g12400
rosa_chinensis RchiOBHm_Chr3g0468541
rosa_laevigata RLG00000024424
rosa_multiflora Rmu_sc0008735.1_g000001 Rmu_sc0009516.1_g000009
rosa_roxburghii Rroxscaffold_6G00412710
rosa_rugosa Rorug03G0095700 Rorug03G0095800 Rorug03G0095800
rosa_samantha Rh3AG144200 Rh3BG166400 Rh3DG165800
rosa_wichuraiana Rw3G013610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1580
AatII GACGTC 2 cut(s) 330, 1310
Acc36I ACCTGC 1 cut(s) 1234
AccB1I GGYRCC 2 cut(s) 98, 2092
AccB7I CCANNNNNTGG 2 cut(s) 439, 1544
AccI GTMKAC 1 cut(s) 1572
AccII CGCG 1 cut(s) 130
AciI CCGC 6 cut(s) 449, 472, 568, 637, 1741, 1976
AclWI GGATC 4 cut(s) 1409, 1422, 1658, 2098
AcoI YGGCCR 2 cut(s) 188, 712
AcsI RAATTY 2 cut(s) 1798, 2666
AcuI CTGAAG 6 cut(s) 573, 618, 1401, 1737, 1833, 2064
AcyI GRCGYC 3 cut(s) 99, 327, 1307
AfaI GTAC 6 cut(s) 751, 905, 1260, 1425, 1703, 1890
AfiI CCNNNNNNNGG 7 cut(s) 439, 590, 1020, 1079, 1544, 1948, 2551
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 2 cut(s) 341, 2026
AjiI CACGTC 2 cut(s) 112, 342
AjnI CCWGG 7 cut(s) 1072, 1263, 1925, 2048, 2110, 2181, 2242
AleI CACNNNNGTG 1 cut(s) 114
Alw21I GWGCWC 3 cut(s) 852, 1343, 2268
Alw26I GTCTC 5 cut(s) 742, 1298, 2073, 2368, 2644
Alw44I GTGCAC 1 cut(s) 848
AlwI GGATC 4 cut(s) 1409, 1422, 1658, 2098
AoxI GGCC 4 cut(s) 42, 188, 712, 1011
ApaLI GTGCAC 1 cut(s) 848
ApeKI GCWGC 8 cut(s) 264, 382, 524, 827, 1130, 1584, 2215, 2724
ApoI RAATTY 2 cut(s) 1798, 2666
ArsI GACNNNNNNTTYG 4 cut(s) 2171, 2203, 2684, 2716
Asp700I GAANNNNTTC 1 cut(s) 687
AspLEI GCGC 3 cut(s) 101, 132, 356
AspS9I GGNCC 4 cut(s) 42, 593, 1738, 2179
AsuC2I CCSGG 1 cut(s) 2145
AsuHPI GGTGA 5 cut(s) 483, 559, 1527, 1868, 2130
AsuII TTCGAA 2 cut(s) 1716, 2690
AvaII GGWCC 3 cut(s) 593, 1738, 2179
BaeGI GKGCMC 1 cut(s) 852
BalI TGGCCA 1 cut(s) 714
BamHI GGATCC 1 cut(s) 1414
BanI GGYRCC 2 cut(s) 98, 2092
BanII GRGCYC 2 cut(s) 1343, 2268
BbsI GAAGAC 4 cut(s) 1206, 1871, 2028, 2699
Bbv12I GWGCWC 3 cut(s) 852, 1343, 2268
BbvI GCAGC 8 cut(s) 276, 394, 536, 839, 1142, 1596, 2227, 2736
BccI CCATC 8 cut(s) 358, 452, 860, 2227, 2284, 2444, 2506, 2530
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 7 cut(s) 1074, 1265, 1927, 2050, 2112, 2183, 2244
BcnI CCSGG 1 cut(s) 2145
BcoDI GTCTC 5 cut(s) 742, 1298, 2073, 2368, 2644
BfaI CTAG 7 cut(s) 644, 1167, 1206, 1254, 1647, 2169, 2567
BfmI CTRYAG 2 cut(s) 1128, 2085
BfoI RGCGCY 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 1234
BglII AGATCT 2 cut(s) 1367, 2165
BisI GCNGC 8 cut(s) 265, 383, 525, 828, 1131, 1585, 2216, 2725
BlpI GCTNAGC 1 cut(s) 2262
BlsI GCNGC 8 cut(s) 266, 384, 526, 829, 1132, 1586, 2217, 2726
BmcAI AGTACT 2 cut(s) 905, 1703
Bme1390I CCNGG 8 cut(s) 1074, 1265, 1927, 2050, 2112, 2145, 2183, 2244
Bme18I GGWCC 3 cut(s) 593, 1738, 2179
BmgBI CACGTC 2 cut(s) 112, 342
BmgT120I GGNCC 4 cut(s) 42, 593, 1738, 2179
BmiI GGNNCC 8 cut(s) 43, 100, 431, 1416, 2054, 2094, 2180, 2363
BmrFI CCNGG 8 cut(s) 1074, 1265, 1927, 2050, 2112, 2145, 2183, 2244
BmrI ACTGGG 2 cut(s) 768, 2663
BmsI GCATC 7 cut(s) 1072, 1795, 1981, 2144, 2248, 2256, 2344
BmuI ACTGGG 2 cut(s) 768, 2663
BoxI GACNNNNGTC 1 cut(s) 2380
BpiI GAAGAC 4 cut(s) 1206, 1871, 2028, 2699
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 1 cut(s) 617
Bpu10I CCTNAGC 1 cut(s) 2404
Bpu1102I GCTNAGC 1 cut(s) 2262
Bpu14I TTCGAA 2 cut(s) 1716, 2690
BpuEI CTTGAG 2 cut(s) 371, 796
BpuMI CCSGG 1 cut(s) 2145
BsaHI GRCGYC 3 cut(s) 99, 327, 1307
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 6 cut(s) 357, 1263, 1264, 1479, 1980, 2048
Bsc4I CCNNNNNNNGG 7 cut(s) 439, 590, 1020, 1079, 1544, 1948, 2551
Bse1I ACTGG 8 cut(s) 715, 763, 1008, 1094, 1731, 2239, 2257, 2658
Bse3DI GCAATG 1 cut(s) 946
BseBI CCWGG 7 cut(s) 1074, 1265, 1927, 2050, 2112, 2183, 2244
BseDI CCNNGG 6 cut(s) 357, 1263, 1264, 1479, 1980, 2048
BseGI GGATG 7 cut(s) 463, 1105, 1150, 1177, 1190, 1810, 1972
BseLI CCNNNNNNNGG 7 cut(s) 439, 590, 1020, 1079, 1544, 1948, 2551
BseMI GCAATG 1 cut(s) 946
BseMII CTCAG 9 cut(s) 137, 989, 1293, 1818, 1897, 2253, 2360, 2630, 2711
BseNI ACTGG 8 cut(s) 715, 763, 1008, 1094, 1731, 2239, 2257, 2658
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 852
BseXI GCAGC 8 cut(s) 276, 394, 536, 839, 1142, 1596, 2227, 2736
BseYI CCCAGC 1 cut(s) 1941
BsgI GTGCAG 3 cut(s) 1212, 1262, 2234
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 4 cut(s) 44, 190, 714, 1013
BshNI GGYRCC 2 cut(s) 98, 2092
BsiHKAI GWGCWC 3 cut(s) 852, 1343, 2268
BsiSI CCGG 1 cut(s) 2145
BslFI GGGAC 2 cut(s) 716, 2192
BslI CCNNNNNNNGG 7 cut(s) 439, 590, 1020, 1079, 1544, 1948, 2551
BsmAI GTCTC 5 cut(s) 742, 1298, 2073, 2368, 2644
BsmBI CGTCTC 1 cut(s) 1298
BsmFI GGGAC 2 cut(s) 716, 2192
BsmI GAATGC 1 cut(s) 1877
BsnI GGCC 4 cut(s) 44, 190, 714, 1013
Bso31I GGTCTC 1 cut(s) 742
Bsp119I TTCGAA 2 cut(s) 1716, 2690
Bsp1286I GDGCHC 3 cut(s) 852, 1343, 2268
Bsp143I GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
Bsp1720I GCTNAGC 1 cut(s) 2262
BspACI CCGC 6 cut(s) 449, 472, 568, 637, 1741, 1976
BspANI GGCC 4 cut(s) 44, 190, 714, 1013
BspCNI CTCAG 9 cut(s) 136, 988, 1294, 1819, 1896, 2254, 2359, 2631, 2710
BspFNI CGCG 1 cut(s) 130
BspHI TCATGA 2 cut(s) 961, 2413
BspLI GGNNCC 8 cut(s) 43, 100, 431, 1416, 2054, 2094, 2180, 2363
BspMAI CTGCAG 1 cut(s) 1132
BspMI ACCTGC 1 cut(s) 1234
BspPI GGATC 4 cut(s) 1409, 1422, 1658, 2098
BspQI GCTCTTC 2 cut(s) 678, 1204
BspT104I TTCGAA 2 cut(s) 1716, 2690
BspT107I GGYRCC 2 cut(s) 98, 2092
BspTI CTTAAG 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 946
BsrI ACTGG 8 cut(s) 715, 763, 1008, 1094, 1731, 2239, 2257, 2658
BssECI CCNNGG 6 cut(s) 357, 1263, 1264, 1479, 1980, 2048
BssMI GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
BssNI GRCGYC 3 cut(s) 99, 327, 1307
BssT1I CCWWGG 1 cut(s) 1980
Bst2UI CCWGG 7 cut(s) 1074, 1265, 1927, 2050, 2112, 2183, 2244
Bst4CI ACNGT 7 cut(s) 483, 533, 854, 2195, 2334, 2514, 2538
Bst6I CTCTTC 5 cut(s) 275, 678, 1204, 1996, 2443
BstACI GRCGYC 3 cut(s) 99, 327, 1307
BstAFI CTTAAG 1 cut(s) 692
BstBI TTCGAA 2 cut(s) 1716, 2690
BstC8I GCNNGC 2 cut(s) 774, 1339
BstDSI CCRYGG 1 cut(s) 1479
BstEII GGTNACC 1 cut(s) 1083
BstENI CCTNNNNNAGG 2 cut(s) 588, 1018
BstF5I GGATG 7 cut(s) 463, 1105, 1150, 1177, 1190, 1810, 1972
BstFNI CGCG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 3 cut(s) 101, 132, 356
BstKTI GATC 7 cut(s) 379, 491, 1370, 1417, 1666, 2106, 2168
BstMAI GTCTC 5 cut(s) 742, 1298, 2073, 2368, 2644
BstMBI GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
BstMWI GCNNNNNNNGC 9 cut(s) 105, 152, 388, 402, 694, 1220, 2253, 2272, 2721
BstNI CCWGG 7 cut(s) 1074, 1265, 1927, 2050, 2112, 2183, 2244
BstNSI RCATGY 3 cut(s) 776, 888, 2030
BstPAI GACNNNNGTC 1 cut(s) 2380
BstPI GGTNACC 1 cut(s) 1083
BstSCI CCNGG 8 cut(s) 1072, 1263, 1925, 2048, 2110, 2143, 2181, 2242
BstSFI CTRYAG 2 cut(s) 1128, 2085
BstSLI GKGCMC 1 cut(s) 852
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 8 cut(s) 276, 394, 536, 839, 1142, 1596, 2227, 2736
BstV2I GAAGAC 4 cut(s) 1206, 1871, 2028, 2699
BstX2I RGATCY 3 cut(s) 1367, 1414, 2165
BstYI RGATCY 3 cut(s) 1367, 1414, 2165
BsuRI GGCC 4 cut(s) 44, 190, 714, 1013
BtgI CCRYGG 1 cut(s) 1479
BtgZI GCGATG 1 cut(s) 2271
BtrI CACGTC 2 cut(s) 112, 342
BtsCI GGATG 7 cut(s) 463, 1105, 1150, 1177, 1190, 1810, 1972
BtsIMutI CAGTG 6 cut(s) 121, 479, 1101, 2232, 2250, 2563
BveI ACCTGC 1 cut(s) 1234
Cac8I GCNNGC 2 cut(s) 774, 1339
CciI TCATGA 2 cut(s) 961, 2413
CfoI GCGC 3 cut(s) 101, 132, 356
Cfr13I GGNCC 4 cut(s) 42, 593, 1738, 2179
CseI GACGC 2 cut(s) 136, 1058
Csp6I GTAC 6 cut(s) 750, 904, 1259, 1424, 1702, 1889
CviQI GTAC 6 cut(s) 750, 904, 1259, 1424, 1702, 1889
DinI GGCGCC 1 cut(s) 100
DpnI GATC 7 cut(s) 378, 490, 1369, 1416, 1665, 2105, 2167
DpnII GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
DraI TTTAAA 1 cut(s) 2007
EaeI YGGCCR 2 cut(s) 188, 712
Eam1104I CTCTTC 5 cut(s) 275, 678, 1204, 1996, 2443
EarI CTCTTC 5 cut(s) 275, 678, 1204, 1996, 2443
EciI GGCGGA 2 cut(s) 464, 1965
Ecl136II GAGCTC 2 cut(s) 1341, 2266
Eco130I CCWWGG 1 cut(s) 1980
Eco24I GRGCYC 2 cut(s) 1343, 2268
Eco31I GGTCTC 1 cut(s) 742
Eco47I GGWCC 3 cut(s) 593, 1738, 2179
Eco53kI GAGCTC 2 cut(s) 1341, 2266
Eco57I CTGAAG 6 cut(s) 573, 618, 1401, 1737, 1833, 2064
Eco91I GGTNACC 1 cut(s) 1083
EcoICRI GAGCTC 2 cut(s) 1341, 2266
EcoNI CCTNNNNNAGG 2 cut(s) 588, 1018
EcoO109I RGGNCCY 1 cut(s) 593
EcoO65I GGTNACC 1 cut(s) 1083
EcoRII CCWGG 7 cut(s) 1072, 1263, 1925, 2048, 2110, 2181, 2242
EcoT14I CCWWGG 1 cut(s) 1980
EcoT22I ATGCAT 1 cut(s) 916
EcoT38I GRGCYC 2 cut(s) 1343, 2268
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 1980
Esp3I CGTCTC 1 cut(s) 1298
FalI AAGNNNNNCTT 6 cut(s) 672, 704, 675, 707, 1216, 1248
FaqI GGGAC 2 cut(s) 716, 2192
FauNDI CATATG 1 cut(s) 2367
FblI GTMKAC 1 cut(s) 1572
Fnu4HI GCNGC 8 cut(s) 265, 383, 525, 828, 1131, 1585, 2216, 2725
FokI GGATG 7 cut(s) 470, 1112, 1137, 1184, 1197, 1817, 1959
FriOI GRGCYC 2 cut(s) 1343, 2268
Fsp4HI GCNGC 8 cut(s) 265, 383, 525, 828, 1131, 1585, 2216, 2725
FspBI CTAG 7 cut(s) 644, 1167, 1206, 1254, 1647, 2169, 2567
GlaI GCGC 3 cut(s) 100, 131, 355
GluI GCNGC 8 cut(s) 265, 383, 525, 828, 1131, 1585, 2216, 2725
GsaI CCCAGC 1 cut(s) 1945
GsuI CTGGAG 1 cut(s) 617
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 4 cut(s) 44, 190, 714, 1013
HapII CCGG 1 cut(s) 2145
HgaI GACGC 2 cut(s) 136, 1058
HhaI GCGC 3 cut(s) 101, 132, 356
Hin1I GRCGYC 3 cut(s) 99, 327, 1307
Hin6I GCGC 3 cut(s) 99, 130, 354
HinP1I GCGC 3 cut(s) 99, 130, 354
HincII GTYRAC 2 cut(s) 1573, 2385
HindII GTYRAC 2 cut(s) 1573, 2385
HindIII AAGCTT 3 cut(s) 608, 2076, 2401
HpaII CCGG 1 cut(s) 2145
HphI GGTGA 5 cut(s) 483, 559, 1527, 1868, 2130
Hpy166II GTNNAC 7 cut(s) 479, 850, 1259, 1573, 1898, 2385, 2541
Hpy188III TCNNGA 9 cut(s) 10, 311, 962, 977, 1206, 1556, 2414, 2425, 2605
Hpy8I GTNNAC 7 cut(s) 479, 850, 1259, 1573, 1898, 2385, 2541
Hpy99I CGWCG 3 cut(s) 332, 1574, 2326
HpyAV CCTTC 8 cut(s) 448, 461, 693, 727, 1677, 1703, 1808, 2124
HpyCH4III ACNGT 7 cut(s) 483, 533, 854, 2195, 2334, 2514, 2538
HpyCH4IV ACGT 5 cut(s) 111, 327, 341, 1307, 2324
HpyF10VI GCNNNNNNNGC 9 cut(s) 105, 152, 388, 402, 694, 1220, 2253, 2272, 2721
HpySE526I ACGT 5 cut(s) 111, 327, 341, 1307, 2324
Hsp92I GRCGYC 3 cut(s) 99, 327, 1307
HspAI GCGC 3 cut(s) 99, 130, 354
KasI GGCGCC 1 cut(s) 98
Kzo9I GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
LguI GCTCTTC 2 cut(s) 678, 1204
LmnI GCTCC 2 cut(s) 2052, 2367
Lsp1109I GCAGC 8 cut(s) 276, 394, 536, 839, 1142, 1596, 2227, 2736
LweI GCATC 7 cut(s) 1072, 1795, 1981, 2144, 2248, 2256, 2344
MaeI CTAG 7 cut(s) 644, 1167, 1206, 1254, 1647, 2169, 2567
MaeII ACGT 5 cut(s) 111, 327, 341, 1307, 2324
MaeIII GTNAC 7 cut(s) 116, 323, 547, 1048, 1083, 1677, 2705
MalI GATC 7 cut(s) 378, 490, 1369, 1416, 1665, 2105, 2167
MboI GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
MflI RGATCY 3 cut(s) 1367, 1414, 2165
MhlI GDGCHC 3 cut(s) 852, 1343, 2268
MlsI TGGCCA 1 cut(s) 714
MluNI TGGCCA 1 cut(s) 714
Mly113I GGCGCC 1 cut(s) 99
MlyI GAGTC 4 cut(s) 1196, 1279, 2042, 2689
MmeI TCCRAC 2 cut(s) 117, 310
Mox20I TGGCCA 1 cut(s) 714
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 1 cut(s) 687
MscI TGGCCA 1 cut(s) 714
MslI CAYNNNNRTG 2 cut(s) 114, 2027
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 59, 637
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 1 cut(s) 2145
MspR9I CCNGG 8 cut(s) 1074, 1265, 1927, 2050, 2112, 2145, 2183, 2244
Mva1269I GAATGC 1 cut(s) 1877
MvaI CCWGG 7 cut(s) 1074, 1265, 1927, 2050, 2112, 2183, 2244
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 9 cut(s) 105, 152, 388, 402, 694, 1220, 2253, 2272, 2721
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 1 cut(s) 2145
NdeI CATATG 1 cut(s) 2367
NdeII GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
NlaIV GGNNCC 8 cut(s) 43, 100, 431, 1416, 2054, 2094, 2180, 2363
NmeAIII GCCGAG 2 cut(s) 166, 382
NmuCI GTSAC 3 cut(s) 116, 323, 547
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 3 cut(s) 776, 888, 2030
NspV TTCGAA 2 cut(s) 1716, 2690
OliI CACNNNNGTG 1 cut(s) 114
PaeI GCATGC 1 cut(s) 776
PagI TCATGA 2 cut(s) 961, 2413
PasI CCCWGGG 1 cut(s) 1264
PciI ACATGT 1 cut(s) 2026
PciSI GCTCTTC 2 cut(s) 678, 1204
PctI GAATGC 1 cut(s) 1877
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 6 cut(s) 640, 1565, 1952, 2015, 2203, 2687
PflFI GACNNNGTC 1 cut(s) 2698
PflMI CCANNNNNTGG 2 cut(s) 439, 1544
PfoI TCCNGGA 1 cut(s) 1072
PkrI GCNGC 8 cut(s) 266, 384, 526, 829, 1132, 1586, 2217, 2726
PleI GAGTC 4 cut(s) 1196, 1279, 2041, 2689
PluTI GGCGCC 1 cut(s) 102
PpsI GAGTC 4 cut(s) 1196, 1279, 2041, 2689
PpuMI RGGWCCY 1 cut(s) 593
PscI ACATGT 1 cut(s) 2026
PshAI GACNNNNGTC 1 cut(s) 2380
PsiI TTATAA 1 cut(s) 1580
Psp124BI GAGCTC 2 cut(s) 1343, 2268
Psp5II RGGWCCY 1 cut(s) 593
Psp6I CCWGG 7 cut(s) 1072, 1263, 1925, 2048, 2110, 2181, 2242
PspEI GGTNACC 1 cut(s) 1083
PspFI CCCAGC 1 cut(s) 1941
PspGI CCWGG 7 cut(s) 1072, 1263, 1925, 2048, 2110, 2181, 2242
PspN4I GGNNCC 8 cut(s) 43, 100, 431, 1416, 2054, 2094, 2180, 2363
PspPI GGNCC 4 cut(s) 42, 593, 1738, 2179
PspPPI RGGWCCY 1 cut(s) 593
PstI CTGCAG 1 cut(s) 1132
PsuI RGATCY 3 cut(s) 1367, 1414, 2165
PsyI GACNNNGTC 1 cut(s) 2698
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 6 cut(s) 751, 905, 1260, 1425, 1703, 1890
RsaNI GTAC 6 cut(s) 750, 904, 1259, 1424, 1702, 1889
RseI CAYNNNNRTG 2 cut(s) 114, 2027
SacI GAGCTC 2 cut(s) 1343, 2268
SalI GTCGAC 1 cut(s) 1571
SapI GCTCTTC 2 cut(s) 678, 1204
SatI GCNGC 8 cut(s) 265, 383, 525, 828, 1131, 1585, 2216, 2725
Sau3AI GATC 7 cut(s) 376, 488, 1367, 1414, 1663, 2103, 2165
Sau96I GGNCC 4 cut(s) 42, 593, 1738, 2179
ScaI AGTACT 2 cut(s) 905, 1703
SchI GAGTC 4 cut(s) 1196, 1279, 2042, 2689
ScrFI CCNGG 8 cut(s) 1074, 1265, 1927, 2050, 2112, 2145, 2183, 2244
SduI GDGCHC 3 cut(s) 852, 1343, 2268
SfaNI GCATC 7 cut(s) 1072, 1795, 1981, 2144, 2248, 2256, 2344
SfcI CTRYAG 2 cut(s) 1128, 2085
SfoI GGCGCC 1 cut(s) 100
SfuI TTCGAA 2 cut(s) 1716, 2690
SinI GGWCC 3 cut(s) 593, 1738, 2179
SmiMI CAYNNNNRTG 2 cut(s) 114, 2027
SmlI CTYRAG 4 cut(s) 8, 386, 692, 811
SmoI CTYRAG 4 cut(s) 8, 386, 692, 811
SphI GCATGC 1 cut(s) 776
SsiI CCGC 6 cut(s) 449, 472, 568, 637, 1741, 1976
SspDI GGCGCC 1 cut(s) 98
SspI AATATT 2 cut(s) 1122, 1786
SspMI CTAG 7 cut(s) 644, 1167, 1206, 1254, 1647, 2169, 2567
SstI GAGCTC 2 cut(s) 1343, 2268
StyD4I CCNGG 8 cut(s) 1072, 1263, 1925, 2048, 2110, 2143, 2181, 2242
StyI CCWWGG 1 cut(s) 1980
TaaI ACNGT 7 cut(s) 483, 533, 854, 2195, 2334, 2514, 2538
TaiI ACGT 5 cut(s) 114, 330, 344, 1310, 2327
TaqII GACCGA 1 cut(s) 389
TatI WGTACW 2 cut(s) 903, 1701
TfiI GAWTC 6 cut(s) 640, 1565, 1952, 2015, 2203, 2687
TscAI CASTG 6 cut(s) 121, 486, 1101, 2239, 2257, 2563
TseFI GTSAC 3 cut(s) 116, 323, 547
TseI GCWGC 8 cut(s) 264, 382, 524, 827, 1130, 1584, 2215, 2724
Tsp45I GTSAC 3 cut(s) 116, 323, 547
TspGWI ACGGA 5 cut(s) 79, 83, 1374, 1407, 1558
TspRI CASTG 6 cut(s) 121, 486, 1101, 2239, 2257, 2563
Tth111I GACNNNGTC 1 cut(s) 2698
Van91I CCANNNNNTGG 2 cut(s) 439, 1544
Vha464I CTTAAG 1 cut(s) 692
VneI GTGCAC 1 cut(s) 848
VpaK11BI GGWCC 3 cut(s) 593, 1738, 2179
XagI CCTNNNNNAGG 2 cut(s) 588, 1018
XapI RAATTY 2 cut(s) 1798, 2666
XbaI TCTAGA 1 cut(s) 1205
XceI RCATGY 3 cut(s) 776, 888, 2030
XcmI CCANNNNNNNNNTGG 1 cut(s) 1000
XmiI GTMKAC 1 cut(s) 1572
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 7 cut(s) 644, 1167, 1206, 1254, 1647, 2169, 2567
ZraI GACGTC 2 cut(s) 328, 1308
ZrmI AGTACT 2 cut(s) 905, 1703
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.