Rh3AG144200

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014760
Physical Location & Seq
Reverse (-)
12745853 .. 12752434
6582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG144200.1

Sequence Viewer

Length: 2226 bp
ATGACATCCAACGGCGCCAGAAGACACGTCACATTAGACGCGCACAAAACAAAAGAACCCAAAAACAGAAGAGAAGAGAGAGATAGAGAGAAAGAAAGAGAGGAGAAGGTGACTCCAAATCCAAAGAGAAACTCGAAACCCCTTTTTCTCTGTTCCCCCCACTCTCACCCTGCCTTTCCCTTTTTATCTTATCCTGCGATTTCCTCTTCTTCTTCCTCCACCACACTTTCCTCTCTGGAAGCCATGAGTGACGTCGGAGAACAGACGTGTCCGATATGCGCCGAGGAGATGGATTTGACCGATCAGCAGCTCAAGCCCTGCGAATGTGGCTATGAGGTCTGTCTGTGGTGCTGGAATCACATTATGGAGATGGCGGAGAAGGATGGAAGGGAAGGTCGGTGTCCGCTGTGCCGAACAACTTACGACAAAGAGAAGATCATGAGGGTGGCAGCAAACTGTAAAGCAGTGTTGGTGACTGAAGTTAATCAGAAGCGGAAACAGAAAAAGCCCCCCAAGGGACCTGAAGCAAAGAAGCATCTCACTGATGTTAGAGTTCTCCAACGGAATCTAGCTTACATAATTGGATTACCTCTCAACCTTGCAAAAGAAGAGCTTCTTAAGCGCAGGGACTATTTTGGCCAGTATGGAAAGGTGTTGAAGGTCTCTATTTCTCGTACATCGACTGGGGATATTCAACATGCTACTAACAACAGTTGTTGTGTGTATATAACGTACTCAAGTGAATATGAGGCAGCTCGATGTATTCAATCGGTGCACAGTTTTGTATTAGATGGTAATTCTTTGAGAGCATGTTTTGGAACCACAAAGTATTGCCATGCTTGGTTGAAAAATGTGCCTTGTAGCAATGCAGATTGTATGTATCTCCATGATTTTGGCTCTCAGGAAGATAGTTTTTCCAAAGATGAACTAGTTTCCGCCTTTGAAAGGAGTAAGGATTTACAGATTATCGGTGTTACAAATAATCTGCACCAGCGTCCAGGGAAAGGGTTACCTCCGCCAGTGGATGAGAATAGCAAATCAAAAATATCATCTGCAGCTAAACCACTTGTCAAACATCCTTTAAATATCACTAGGGATGAGTTTAAGGGATCTTGTGCGGATGAAGACTCTAGAAGAGCTACTCCTGCAAGAACTTCTTGGGTCATGCAGGTTGCCCCTAGTTTACCCCTGGGAACAAGTGCTCAAATGCCTTCCTATCAAAAGGCTGAGACCTCTAGTGACGTTCATGCTCTTTCATCAGAAGTTGTAAGTACTGAAAGTTCTAACCTCAGAGTAAGATCTATTACATCTGAAGAAAGCTGTGAAGTGCGTTTTAATAGTTTGGATCATCTGGTACCGACCAAACAGAATAGTGAAGAAACTGGTCAAGTAGCCTTATCAAATAAACCTGCAGGAGCCTTTGTAGATAGCACTCTTGTAGGTATAACTTCTGGACATTGTCTATCACCAGATAAAGGTGTTGATCGAGATATTAAATCCACAGACTTTATAAGCAGCAGAAACTTAAATTGTCTATCACCAAACTTATCCAAAAGTTTATGTGATAACAAAGGAAGTAGCTTTGCTACATTTGATCCCTCCAGTGTGTTACCAAAGATGGGATTAGCGAAGTATTCGGAAGGGTCTGAAAACAATAAAGCCAGTATTGACTGCAATCTTTCTTCAGATTTAGGGGAGAGTGGCATAATCTCAAATATTTTGACGATGAATTTGGATGCACCTGAAGGTTCTTTAACTGAGCTTCATAATCTGGTTAATTTGTTGGGTGAAACTGATAAAGAAAGCAGTGTTCTCAGAGTACCAAGTTCAAGAAAAATGCATGAGAAAAAGCAGTCCAGGTTCTCATTTGCCCAGCAAGAGGATTCTTGTGATAATATATGGCATCCGCCCAAAGACTACTCTTCTTTATCTGATTTAAATAAGGATTCTTTCATACATGTGGGGTCTTCAAATCTTCTCAGGAGCCATTCTTTTTTGTCTCCTAAAGCTTCAGGTTTGTATCTTGCATACTCTATATACATTACTGTAATTCGGTCTTTTCTGATCTACTGGTTTGCCTCGTCACTTGTTTATTTGATTATCTGTAAACAGCTGGTAGAGTCTGCTTTTCTAGTTCATGATTTGAGATTTATGTTGGATCTCTCTCTCTCAAAAAAGGACTGGGATGTAGCAATCATTTTATATTCTTTTTTGAGGATTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

741

Amino Acids

82.61

Weight (kDa)

7.71

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 90 - 142 5.2e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014760)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15190
malus_domestica MD12G1125800.v1.1
prunus_persica Prupe.6G242300_v2.0.a1 Prupe.6G242300_v2.0.a1
pyrus_communis pycom12g12400
rosa_chinensis RchiOBHm_Chr3g0468541
rosa_laevigata RLG00000024424
rosa_multiflora Rmu_sc0008735.1_g000001 Rmu_sc0009516.1_g000009
rosa_roxburghii Rroxscaffold_6G00412710
rosa_rugosa Rorug03G0095700 Rorug03G0095800 Rorug03G0095800
rosa_samantha Rh3AG144200 Rh3BG166400 Rh3DG165800
rosa_wichuraiana Rw3G013610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1511
AatII GACGTC 1 cut(s) 255
Acc36I ACCTGC 2 cut(s) 1159, 1417
Acc65I GGTACC 1 cut(s) 1354
AccB1I GGYRCC 2 cut(s) 14, 1354
AccII CGCG 1 cut(s) 41
AciI CCGC 7 cut(s) 374, 404, 493, 936, 1016, 1118, 1907
AclWI GGATC 4 cut(s) 1117, 1353, 1589, 2166
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 1 cut(s) 1729
AcuI CTGAAG 6 cut(s) 498, 543, 1332, 1668, 1764, 1995
AcyI GRCGYC 2 cut(s) 15, 252
AfaI GTAC 5 cut(s) 676, 734, 1273, 1356, 1821
AfiI CCNNNNNNNGG 6 cut(s) 515, 945, 1004, 1475, 1619, 1879
AflII CTTAAG 1 cut(s) 617
AflIII ACRYGT 3 cut(s) 25, 266, 1957
AgsI TTSAA 7 cut(s) 658, 695, 767, 847, 944, 1830, 1971
AhlI ACTAGT 1 cut(s) 928
AjiI CACGTC 2 cut(s) 28, 267
AjnI CCWGG 3 cut(s) 997, 1188, 1856
Alw21I GWGCWC 2 cut(s) 777, 1204
Alw26I GTCTC 3 cut(s) 667, 1223, 2004
Alw44I GTGCAC 1 cut(s) 773
AlwI GGATC 4 cut(s) 1117, 1353, 1589, 2166
AoxI GGCC 1 cut(s) 637
ApaLI GTGCAC 1 cut(s) 773
ApeKI GCWGC 5 cut(s) 307, 449, 752, 1055, 1515
ApoI RAATTY 1 cut(s) 1729
ArsI GACNNNNNNTTYG 2 cut(s) 1714, 1746
Asp700I GAANNNNTTC 1 cut(s) 612
Asp718I GGTACC 1 cut(s) 1354
AspLEI GCGC 4 cut(s) 17, 43, 281, 624
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 6 cut(s) 121, 158, 484, 1458, 1530, 1799
AvaII GGWCC 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 777
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 2 cut(s) 14, 1354
BbsI GAAGAC 3 cut(s) 28, 1131, 1959
Bbv12I GWGCWC 2 cut(s) 777, 1204
BbvI GCAGC 5 cut(s) 319, 461, 764, 1067, 1527
BccI CCATC 5 cut(s) 283, 364, 377, 785, 1612
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 3 cut(s) 999, 1190, 1858
BcoDI GTCTC 3 cut(s) 667, 1223, 2004
BcuI ACTAGT 1 cut(s) 928
BfaI CTAG 7 cut(s) 569, 929, 1092, 1131, 1179, 1236, 2132
BfmI CTRYAG 2 cut(s) 1053, 1410
BfoI RGCGCY 1 cut(s) 18
BfrI CTTAAG 1 cut(s) 617
BfuAI ACCTGC 2 cut(s) 1159, 1417
BglII AGATCT 1 cut(s) 1298
BisI GCNGC 5 cut(s) 308, 450, 753, 1056, 1516
BlsI GCNGC 5 cut(s) 309, 451, 754, 1057, 1517
BmcAI AGTACT 1 cut(s) 1273
Bme1390I CCNGG 3 cut(s) 999, 1190, 1858
Bme18I GGWCC 1 cut(s) 518
BmgBI CACGTC 2 cut(s) 28, 267
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 6 cut(s) 16, 519, 820, 1356, 1417, 1985
BmrFI CCNGG 3 cut(s) 999, 1190, 1858
BmrI ACTGGG 2 cut(s) 693, 2191
BmsI GCATC 3 cut(s) 544, 1726, 1912
BmuI ACTGGG 2 cut(s) 693, 2191
BpiI GAAGAC 3 cut(s) 28, 1131, 1959
BpmI CTGGAG 1 cut(s) 1585
BpuEI CTTGAG 2 cut(s) 296, 721
BsaHI GRCGYC 2 cut(s) 15, 252
BsaI GGTCTC 2 cut(s) 667, 1223
BsaJI CCNNGG 5 cut(s) 282, 513, 998, 1188, 1189
BsaXI ACNNNNNCTCC 2 cut(s) 1407, 1437
Bsc4I CCNNNNNNNGG 6 cut(s) 515, 945, 1004, 1475, 1619, 1879
Bse1I ACTGG 8 cut(s) 640, 688, 1019, 1387, 1602, 1662, 2075, 2186
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 3 cut(s) 999, 1190, 1858
BseDI CCNNGG 5 cut(s) 282, 513, 998, 1188, 1189
BseGI GGATG 9 cut(s) 5, 388, 1030, 1075, 1102, 1126, 1741, 1903, 2191
BseLI CCNNNNNNNGG 6 cut(s) 515, 945, 1004, 1475, 1619, 1879
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 6 cut(s) 914, 1218, 1303, 1749, 1828, 1993
BseNI ACTGG 8 cut(s) 640, 688, 1019, 1387, 1602, 1662, 2075, 2186
BseRI GAGGAG 2 cut(s) 116, 299
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 5 cut(s) 319, 461, 764, 1067, 1527
BseYI CCCAGC 1 cut(s) 1872
BsgI GTGCAG 1 cut(s) 971
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 639
BshNI GGYRCC 2 cut(s) 14, 1354
BsiHKAI GWGCWC 2 cut(s) 777, 1204
BslFI GGGAC 2 cut(s) 531, 641
BslI CCNNNNNNNGG 6 cut(s) 515, 945, 1004, 1475, 1619, 1879
BsmAI GTCTC 3 cut(s) 667, 1223, 2004
BsmFI GGGAC 2 cut(s) 531, 641
BsnI GGCC 1 cut(s) 639
Bso31I GGTCTC 2 cut(s) 667, 1223
Bsp1286I GDGCHC 2 cut(s) 777, 1204
Bsp143I GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
BspACI CCGC 7 cut(s) 374, 404, 493, 936, 1016, 1118, 1907
BspANI GGCC 1 cut(s) 639
BspCNI CTCAG 6 cut(s) 913, 1219, 1302, 1750, 1827, 1992
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 2 cut(s) 438, 2137
BspLI GGNNCC 6 cut(s) 16, 519, 820, 1356, 1417, 1985
BspMAI CTGCAG 2 cut(s) 1057, 1414
BspMI ACCTGC 2 cut(s) 1159, 1417
BspPI GGATC 4 cut(s) 1117, 1353, 1589, 2166
BspQI GCTCTTC 2 cut(s) 603, 1129
BspT107I GGYRCC 2 cut(s) 14, 1354
BspTI CTTAAG 1 cut(s) 617
BspTNI GGTCTC 2 cut(s) 667, 1223
BsrDI GCAATG 1 cut(s) 871
BsrI ACTGG 8 cut(s) 640, 688, 1019, 1387, 1602, 1662, 2075, 2186
BssECI CCNNGG 5 cut(s) 282, 513, 998, 1188, 1189
BssMI GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
BssNI GRCGYC 2 cut(s) 15, 252
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 3 cut(s) 999, 1190, 1858
Bst4CI ACNGT 4 cut(s) 458, 713, 779, 2047
Bst6I CTCTTC 6 cut(s) 64, 69, 211, 603, 1129, 1927
BstACI GRCGYC 2 cut(s) 15, 252
BstAFI CTTAAG 1 cut(s) 617
BstDEI CTNAG 6 cut(s) 900, 1227, 1289, 1758, 1814, 1979
BstEII GGTNACC 1 cut(s) 1008
BstENI CCTNNNNNAGG 1 cut(s) 943
BstF5I GGATG 9 cut(s) 5, 388, 1030, 1075, 1102, 1126, 1741, 1903, 2191
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 4 cut(s) 17, 43, 281, 624
BstKTI GATC 9 cut(s) 304, 438, 1112, 1301, 1348, 1486, 1597, 2067, 2161
BstMAI GTCTC 3 cut(s) 667, 1223, 2004
BstMBI GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
BstMWI GCNNNNNNNGC 4 cut(s) 313, 327, 619, 1145
BstNI CCWGG 3 cut(s) 999, 1190, 1858
BstNSI RCATGY 3 cut(s) 701, 813, 1961
BstPI GGTNACC 1 cut(s) 1008
BstSCI CCNGG 3 cut(s) 997, 1188, 1856
BstSFI CTRYAG 2 cut(s) 1053, 1410
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 5 cut(s) 319, 461, 764, 1067, 1527
BstV2I GAAGAC 3 cut(s) 28, 1131, 1959
BstX2I RGATCY 3 cut(s) 1109, 1298, 2158
BstXI CCANNNNNNTGG 1 cut(s) 893
BstYI RGATCY 3 cut(s) 1109, 1298, 2158
BsuRI GGCC 1 cut(s) 639
BtrI CACGTC 2 cut(s) 28, 267
BtsCI GGATG 9 cut(s) 5, 388, 1030, 1075, 1102, 1126, 1741, 1903, 2191
BtsI GCAGTG 2 cut(s) 471, 1813
BtsIMutI CAGTG 5 cut(s) 471, 540, 1026, 1609, 1813
BveI ACCTGC 2 cut(s) 1159, 1417
CciI TCATGA 2 cut(s) 438, 2137
CfoI GCGC 4 cut(s) 17, 43, 281, 624
Cfr13I GGNCC 1 cut(s) 518
CseI GACGC 2 cut(s) 47, 983
Csp6I GTAC 5 cut(s) 675, 733, 1272, 1355, 1820
CviQI GTAC 5 cut(s) 675, 733, 1272, 1355, 1820
DdeI CTNAG 6 cut(s) 900, 1227, 1289, 1758, 1814, 1979
DinI GGCGCC 1 cut(s) 16
DpnI GATC 9 cut(s) 303, 437, 1111, 1300, 1347, 1485, 1596, 2066, 2160
DpnII GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
DraI TTTAAA 2 cut(s) 1083, 1938
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 6 cut(s) 64, 69, 211, 603, 1129, 1927
EarI CTCTTC 6 cut(s) 64, 69, 211, 603, 1129, 1927
EciI GGCGGA 4 cut(s) 389, 925, 1005, 1896
Eco130I CCWWGG 1 cut(s) 513
Eco31I GGTCTC 2 cut(s) 667, 1223
Eco47I GGWCC 1 cut(s) 518
Eco57I CTGAAG 6 cut(s) 498, 543, 1332, 1668, 1764, 1995
Eco91I GGTNACC 1 cut(s) 1008
EcoNI CCTNNNNNAGG 1 cut(s) 943
EcoO109I RGGNCCY 1 cut(s) 518
EcoO65I GGTNACC 1 cut(s) 1008
EcoRII CCWGG 3 cut(s) 997, 1188, 1856
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 1842
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 513
FalI AAGNNNNNCTT 6 cut(s) 597, 629, 600, 632, 1141, 1173
FaqI GGGAC 2 cut(s) 531, 641
Fnu4HI GCNGC 5 cut(s) 308, 450, 753, 1056, 1516
FokI GGATG 8 cut(s) 395, 1037, 1062, 1109, 1133, 1748, 1890, 2198
Fsp4HI GCNGC 5 cut(s) 308, 450, 753, 1056, 1516
FspBI CTAG 7 cut(s) 569, 929, 1092, 1131, 1179, 1236, 2132
GlaI GCGC 4 cut(s) 16, 42, 280, 623
GluI GCNGC 5 cut(s) 308, 450, 753, 1056, 1516
GsaI CCCAGC 1 cut(s) 1876
GsuI CTGGAG 1 cut(s) 1585
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 639
HgaI GACGC 2 cut(s) 47, 983
HhaI GCGC 4 cut(s) 17, 43, 281, 624
Hin1I GRCGYC 2 cut(s) 15, 252
Hin6I GCGC 4 cut(s) 15, 41, 279, 622
HinP1I GCGC 4 cut(s) 15, 41, 279, 622
HindIII AAGCTT 1 cut(s) 2007
HinfI GANTC 7 cut(s) 112, 355, 565, 1127, 1883, 1946, 2120
HphI GGTGA 6 cut(s) 121, 158, 484, 1458, 1530, 1799
Hpy166II GTNNAC 3 cut(s) 775, 1184, 2108
Hpy188III TCNNGA 9 cut(s) 236, 439, 902, 1131, 1452, 1487, 1830, 1981, 2138
Hpy8I GTNNAC 3 cut(s) 775, 1184, 2108
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 8 cut(s) 100, 373, 381, 386, 652, 1221, 1634, 1739
HpyCH4III ACNGT 4 cut(s) 458, 713, 779, 2047
HpyCH4IV ACGT 5 cut(s) 27, 252, 266, 731, 1242
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 327, 619, 1145
HpyF3I CTNAG 6 cut(s) 900, 1227, 1289, 1758, 1814, 1979
HpySE526I ACGT 5 cut(s) 27, 252, 266, 731, 1242
Hsp92I GRCGYC 2 cut(s) 15, 252
HspAI GCGC 4 cut(s) 15, 41, 279, 622
KasI GGCGCC 1 cut(s) 14
KpnI GGTACC 1 cut(s) 1358
Kzo9I GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
LguI GCTCTTC 2 cut(s) 603, 1129
LmnI GCTCC 2 cut(s) 1415, 1983
Lsp1109I GCAGC 5 cut(s) 319, 461, 764, 1067, 1527
LweI GCATC 3 cut(s) 544, 1726, 1912
MaeI CTAG 7 cut(s) 569, 929, 1092, 1131, 1179, 1236, 2132
MaeII ACGT 5 cut(s) 27, 252, 266, 731, 1242
MaeIII GTNAC 9 cut(s) 28, 109, 248, 472, 973, 1008, 1238, 1608, 2082
MalI GATC 9 cut(s) 303, 437, 1111, 1300, 1347, 1485, 1596, 2066, 2160
MboI GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
MflI RGATCY 3 cut(s) 1109, 1298, 2158
MhlI GDGCHC 2 cut(s) 777, 1204
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 6 cut(s) 579, 796, 1528, 1729, 1777, 2049
MluNI TGGCCA 1 cut(s) 639
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 3 cut(s) 106, 1121, 2129
MmeI TCCRAC 4 cut(s) 33, 235, 583, 2136
Mox20I TGGCCA 1 cut(s) 639
Mph1103I ATGCAT 1 cut(s) 1842
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 1 cut(s) 639
MslI CAYNNNNRTG 2 cut(s) 443, 1958
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 2 cut(s) 406, 2113
MspCI CTTAAG 1 cut(s) 617
MspR9I CCNGG 3 cut(s) 999, 1190, 1858
MvaI CCWGG 3 cut(s) 999, 1190, 1858
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 4 cut(s) 313, 327, 619, 1145
NarI GGCGCC 1 cut(s) 15
NdeII GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
NlaIV GGNNCC 6 cut(s) 16, 519, 820, 1356, 1417, 1985
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 6 cut(s) 28, 109, 248, 472, 1238, 2082
NsiI ATGCAT 1 cut(s) 1842
NspI RCATGY 3 cut(s) 701, 813, 1961
PagI TCATGA 2 cut(s) 438, 2137
PasI CCCWGGG 1 cut(s) 1189
PciI ACATGT 1 cut(s) 1957
PciSI GCTCTTC 2 cut(s) 603, 1129
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 4 cut(s) 355, 565, 1883, 1946
PflFI GACNNNGTC 1 cut(s) 1458
PkrI GCNGC 5 cut(s) 309, 451, 754, 1057, 1517
PleI GAGTC 3 cut(s) 106, 1121, 2128
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 3 cut(s) 106, 1121, 2128
PpuMI RGGWCCY 1 cut(s) 518
PscI ACATGT 1 cut(s) 1957
PsiI TTATAA 1 cut(s) 1511
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 3 cut(s) 997, 1188, 1856
PspEI GGTNACC 1 cut(s) 1008
PspFI CCCAGC 1 cut(s) 1872
PspGI CCWGG 3 cut(s) 997, 1188, 1856
PspN4I GGNNCC 6 cut(s) 16, 519, 820, 1356, 1417, 1985
PspPI GGNCC 1 cut(s) 518
PspPPI RGGWCCY 1 cut(s) 518
PsrI GAACNNNNNNTAC 2 cut(s) 1264, 1296
PstI CTGCAG 2 cut(s) 1057, 1414
PsuI RGATCY 3 cut(s) 1109, 1298, 2158
PsyI GACNNNGTC 1 cut(s) 1458
PvuII CAGCTG 1 cut(s) 2113
RsaI GTAC 5 cut(s) 676, 734, 1273, 1356, 1821
RsaNI GTAC 5 cut(s) 675, 733, 1272, 1355, 1820
RseI CAYNNNNRTG 2 cut(s) 443, 1958
SapI GCTCTTC 2 cut(s) 603, 1129
SatI GCNGC 5 cut(s) 308, 450, 753, 1056, 1516
Sau3AI GATC 9 cut(s) 301, 435, 1109, 1298, 1345, 1483, 1594, 2064, 2158
Sau96I GGNCC 1 cut(s) 518
SbfI CCTGCAGG 1 cut(s) 1414
ScaI AGTACT 1 cut(s) 1273
SchI GAGTC 3 cut(s) 106, 1121, 2129
ScrFI CCNGG 3 cut(s) 999, 1190, 1858
SdaI CCTGCAGG 1 cut(s) 1414
SduI GDGCHC 2 cut(s) 777, 1204
SfaNI GCATC 3 cut(s) 544, 1726, 1912
SfcI CTRYAG 2 cut(s) 1053, 1410
SfoI GGCGCC 1 cut(s) 16
SinI GGWCC 1 cut(s) 518
SmiI ATTTAAAT 1 cut(s) 1938
SmiMI CAYNNNNRTG 2 cut(s) 443, 1958
SmlI CTYRAG 3 cut(s) 311, 617, 736
SmoI CTYRAG 3 cut(s) 311, 617, 736
SpeI ACTAGT 1 cut(s) 928
Sse8387I CCTGCAGG 1 cut(s) 1414
Sse9I AATT 6 cut(s) 579, 796, 1528, 1729, 1777, 2049
SsiI CCGC 7 cut(s) 374, 404, 493, 936, 1016, 1118, 1907
SspDI GGCGCC 1 cut(s) 14
SspI AATATT 1 cut(s) 1717
SspMI CTAG 7 cut(s) 569, 929, 1092, 1131, 1179, 1236, 2132
StyD4I CCNGG 3 cut(s) 997, 1188, 1856
StyI CCWWGG 1 cut(s) 513
SwaI ATTTAAAT 1 cut(s) 1938
TaaI ACNGT 4 cut(s) 458, 713, 779, 2047
TaiI ACGT 5 cut(s) 30, 255, 269, 734, 1245
TaqI TCGA 4 cut(s) 134, 680, 757, 1486
TaqII GACCGA 2 cut(s) 314, 2043
TasI AATT 6 cut(s) 579, 796, 1528, 1729, 1777, 2049
TatI WGTACW 1 cut(s) 1271
TfiI GAWTC 4 cut(s) 355, 565, 1883, 1946
TscAI CASTG 5 cut(s) 471, 547, 1026, 1609, 1813
TseFI GTSAC 6 cut(s) 28, 109, 248, 472, 1238, 2082
TseI GCWGC 5 cut(s) 307, 449, 752, 1055, 1515
Tsp45I GTSAC 6 cut(s) 28, 109, 248, 472, 1238, 2082
TspDTI ATGAA 8 cut(s) 939, 1137, 1235, 1245, 1742, 1754, 1942, 2126
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 5 cut(s) 471, 547, 1026, 1609, 1813
Tth111I GACNNNGTC 1 cut(s) 1458
Vha464I CTTAAG 1 cut(s) 617
VneI GTGCAC 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 518
XagI CCTNNNNNAGG 1 cut(s) 943
XapI RAATTY 1 cut(s) 1729
XbaI TCTAGA 1 cut(s) 1130
XceI RCATGY 3 cut(s) 701, 813, 1961
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 7 cut(s) 569, 929, 1092, 1131, 1179, 1236, 2132
ZraI GACGTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 1273
Zsp2I ATGCAT 1 cut(s) 1842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.