Rmu_sc0008735.1_g000001

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008735.1
OG0014760
Physical Location & Seq
Forward (+)
1 .. 7588
7588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008735.1_g000001.1.cds

Sequence Viewer

Length: 3251 bp
gatcgtgcgacgtgggagagatgtacgtgcggctgtggtgtgatcataaagaggtaactgggcatttgaagggtatggacacgtgtcgtaaagagagtgaagaaaaggtaaatccggagtctgctcgttctctccttgtcgaacgccaccgtcgatcccgccgttgcgttctggcccgggaggggatgtcgttgatggttagtggcgggtcctcaaggcagagacgtgatccaggggaggagggtgggttctcgacctcgggttgggtagatcgatctcgatctgtccctctcggatctggagggacgacggttctggggctgtggcagattttttcttcccggcggtgggttatggtgtcatcgaccaggcaattggggttatggtggatgcggtcaaatcgcggcagatgggatcccagttgggatatgtttatgttatggttttggatctggatgcagtcgtcaactgggtgtagactttgcttgctttttggcaaggtggaagggcggtatcaaaatgtggtgaggccgcagggtggtggtgatggtgctcgccggcgacgggaacagtttgaagcattgttggattactgttggggaaagtgggggttgggctgggcctctgtttttgggccttgttgtaccttcggacacggtgttgaagaggacgctgccttctatgccgttgattatgaggtttcactggaattttcgggttcatatgttcaaagtagccttggaaatgagcgtctggtagttagagtttgggccctttggcctgatggtctatgtaaccgctgtttcttggggtattggttcatgtcccccccattggaagccatgagtgacgtcggagaacagacgtgtccgatatgcgccgaggagatggatttgaccgatcagcagctcaagccctgcgaatgtggctatgaggtctgtctgtggtgctggaatcacattatggagatggcggagaaggatggaagggaaggtcggtgtccgctgtgccgaacaacttacgacaaagagaagatcatgagggtggcagcaaactgtaaagcagtgttggtgactgaagttaatcagaagcggaaacagaaaaagccccccaagggacctgaagcaaagaagcatctcactgatgttagagttctccaacggaatctagcttacataattggattacctctcaaccttgcaaaagaagagcttcttaagcgcagggactattttggccagtatggaaaagttttgaaggtctctatttctcgtacatcgactggggatattcaacatgctactaacaacagttgttgtgtgtatataacgtactcaagtgaatatgaggcagctcgatgtattcaatcggtgcacagttttgtattagatggtaattctttgagagcatgttttggaaccacaaagtattgccatgcttggttgaaaaatgtgccttgtagcaatgcagattgtatgtatctccatgattttggctctcaggaagatagtttttccaaagatgaactagtttcggcctttgaaaggagtaaggatttacagattattggtgttacaaataatctgcatcagcgtccggggaaaggattacctccgccagtggatgagaatagcaaatcaaaaatatcatctgcagctaaaccacttgtcaaacatcctttaaatatcactagggatgagtttaaaggatcttgtgcggatgaagactctagaagagctactcctgcaagaacttcttgggtcatgcaggttgcccctagtttacccctgggaacaagtgctcaaatgccttcctatcaaaagcctgagacctctagtgacgttcttgctctttcatcagaagttataagcactgaaagttctaacctcagagtaagatctattacatctgaagaaagctgtgaagtgcgttttaatagtttggatcatctggtactgaccaaacagaatagtgaagaaactggtcaagtagccttatcaaataaacctgcaggagcctttgtagatagcactcttgtaggtataacttctggacattgtctatcaccagataaaggtgttgatcgagatattaaatccacagactctataagcagcagaaacttaaattatctatcaccaaacttatccaaaagtttatgtgataacaaaggaagtagctttgctacatttgatccttccagtgtgttaccaaagatgggattagcgaagtattcggaagggtctgaaaacaataaagccagtattgactgcaatctttcttcagatttaggggagagtggcataatctcaaatattttgacaatgaatttggatgcacctgaaggttctttaactgagcttcataatctggttaatttgttgggtgaaactgataaagaaagcagtgttctcagagtacctagttcaagaaaaatgcatgagaaaaagcagtccaggttctcatttgcccagcaagaggattcttgtgataatatatggcatccgcccaaagactactattctctatctgatttaaataaggattctttcatacatgtggggtcttcaaatcttctcaggagccgttcttttttgtctcctaaagcttcagctacagaagtacctacttcgatcccaccaggattttcagtaccaagaagggcatcacctccaggtttttcttctcatgggaggtctaggagggtggaccaggcttttgacagttctgtgaatcatttgctgcaaccagctgctatgcccactggttactctggcatcactcgcgatgctgagctctttgagccatcaatttttgatattggtaatggaatattggagagagggagagcaactttatcacagtataattcttctcagccagatgcaaggctccatatgatgagacagcagtcaactcttacacagcaaaacttaggatttcatgaccacttcaggaatacatactcttccttgcatgatggacaactactttctccacagcatcccaatcaatttcaacccaatccatctacatttgcacagtccacccctcaacaggtcagtgatgtgcatgtatcaaatagccattgggttcaatggaatggggtcaagagtacaagcgacctaggaatatcagaattgctgagaaatgagagactgggatttaacaaattcattccttgttatgaggatacaaagactcgatcaagttactttagcgatctaaacagcaaagggtttgaaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

1082

Amino Acids

121.03

Weight (kDa)

7.46

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014760)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15190
malus_domestica MD12G1125800.v1.1
prunus_persica Prupe.6G242300_v2.0.a1 Prupe.6G242300_v2.0.a1
pyrus_communis pycom12g12400
rosa_chinensis RchiOBHm_Chr3g0468541
rosa_laevigata RLG00000024424
rosa_multiflora Rmu_sc0008735.1_g000001 Rmu_sc0009516.1_g000009
rosa_roxburghii Rroxscaffold_6G00412710
rosa_rugosa Rorug03G0095700 Rorug03G0095800 Rorug03G0095800
rosa_samantha Rh3AG144200 Rh3BG166400 Rh3DG165800
rosa_wichuraiana Rw3G013610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1867
AatII GACGTC 1 cut(s) 854
Acc36I ACCTGC 2 cut(s) 1758, 2016
AccI GTMKAC 1 cut(s) 477
AccII CGCG 2 cut(s) 404, 2786
AccIII TCCGGA 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 1236
AcsI RAATTY 4 cut(s) 709, 2328, 3172, 3245
AcuI CTGAAG 7 cut(s) 1097, 1142, 1931, 2267, 2363, 2594, 2937
AcvI CACGTG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 851
AfaI GTAC 9 cut(s) 25, 645, 1275, 1333, 1955, 2420, 2624, 2654, 3117
AflII CTTAAG 1 cut(s) 1216
AflIII ACRYGT 4 cut(s) 80, 82, 865, 2556
AhlI ACTAGT 1 cut(s) 1527
AjiI CACGTC 3 cut(s) 12, 226, 866
AjnI CCWGG 7 cut(s) 231, 367, 1787, 2455, 2640, 2673, 2711
AloI GAACNNNNNNTCC 2 cut(s) 232, 264
Alw21I GWGCWC 4 cut(s) 555, 1376, 1803, 2798
Alw26I GTCTC 6 cut(s) 216, 1266, 1822, 2603, 2898, 3150
Alw44I GTGCAC 1 cut(s) 1372
Ama87I CYCGRG 2 cut(s) 176, 258
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 8 cut(s) 173, 529, 620, 634, 770, 778, 1236, 1535
ApaI GGGCCC 1 cut(s) 774
ApaLI GTGCAC 1 cut(s) 1372
ApeKI GCWGC 8 cut(s) 673, 906, 1048, 1351, 1654, 2114, 2742, 2752
ApoI RAATTY 4 cut(s) 709, 2328, 3172, 3245
ArsI GACNNNNNNTTYG 4 cut(s) 2313, 2345, 2701, 2733
Asp700I GAANNNNTTC 1 cut(s) 1211
AspA2I CCTAGG 1 cut(s) 3126
AspLEI GCGC 2 cut(s) 880, 1223
AspS9I GGNCC 8 cut(s) 174, 209, 620, 634, 770, 771, 1117, 2709
AsuC2I CCSGG 4 cut(s) 177, 178, 342, 1598
AsuHPI GGTGA 7 cut(s) 537, 556, 1083, 2057, 2129, 2398, 2660
AvaI CYCGRG 2 cut(s) 176, 258
AvaII GGWCC 3 cut(s) 209, 1117, 2709
AvrII CCTAGG 1 cut(s) 3126
BaeGI GKGCMC 2 cut(s) 774, 1376
BaeI ACNNNNGTAYC 2 cut(s) 2606, 2639
BalI TGGCCA 1 cut(s) 1238
BamHI GGATCC 1 cut(s) 414
BanII GRGCYC 2 cut(s) 774, 2798
BbrPI CACGTG 1 cut(s) 83
BbsI GAAGAC 2 cut(s) 1730, 2558
Bbv12I GWGCWC 4 cut(s) 555, 1376, 1803, 2798
BbvI GCAGC 8 cut(s) 660, 918, 1060, 1363, 1666, 2126, 2729, 2739
BceAI ACGGC 3 cut(s) 146, 670, 2570
BciT130I CCWGG 7 cut(s) 233, 369, 1789, 2457, 2642, 2675, 2713
BciVI GTATCC 1 cut(s) 3186
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 4 cut(s) 177, 178, 342, 1598
BcoDI GTCTC 6 cut(s) 216, 1266, 1822, 2603, 2898, 3150
BcuI ACTAGT 1 cut(s) 1527
BfaI CTAG 9 cut(s) 1168, 1528, 1691, 1730, 1778, 1835, 2423, 2699, 3127
BfmI CTRYAG 3 cut(s) 1652, 2009, 2615
BfrI CTTAAG 1 cut(s) 1216
BfuAI ACCTGC 2 cut(s) 1758, 2016
BfuI GTATCC 1 cut(s) 3186
BglII AGATCT 1 cut(s) 1897
BlnI CCTAGG 1 cut(s) 3126
BlpI GCTNAGC 1 cut(s) 2792
Bme18I GGWCC 3 cut(s) 209, 1117, 2709
BmeT110I CYCGRG 2 cut(s) 176, 258
BmgBI CACGTC 3 cut(s) 12, 226, 866
BmgT120I GGNCC 8 cut(s) 174, 209, 620, 634, 770, 771, 1117, 2709
BmiI GGNNCC 8 cut(s) 210, 416, 772, 1118, 1419, 2016, 2584, 2893
BmrI ACTGGG 5 cut(s) 68, 413, 479, 1292, 3169
BmuI ACTGGG 5 cut(s) 68, 413, 479, 1292, 3169
BoxI GACNNNNGTC 2 cut(s) 83, 2910
BpiI GAAGAC 2 cut(s) 1730, 2558
BpmI CTGGAG 2 cut(s) 320, 2657
Bpu1102I GCTNAGC 1 cut(s) 2792
BpuEI CTTGAG 3 cut(s) 198, 895, 1320
BpuMI CCSGG 4 cut(s) 177, 178, 342, 1598
Bsa29I ATCGAT 1 cut(s) 273
BsaAI YACGTR 2 cut(s) 27, 83
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 851
BsaI GGTCTC 2 cut(s) 1266, 1822
BsaWI WCCGGW 1 cut(s) 114
BsaXI ACNNNNNCTCC 6 cut(s) 172, 202, 232, 262, 2006, 2036
Bse118I RCCGGY 1 cut(s) 557
Bse3DI GCAATG 1 cut(s) 1470
Bse8I GATNNNNATC 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 7 cut(s) 233, 369, 1789, 2457, 2642, 2675, 2713
BseCI ATCGAT 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 279
BseMI GCAATG 1 cut(s) 1470
BseMII CTCAG 9 cut(s) 1513, 1817, 1902, 2348, 2427, 2592, 2783, 2890, 3136
BseRI GAGGAG 2 cut(s) 253, 898
BseSI GKGCMC 2 cut(s) 774, 1376
BseXI GCAGC 8 cut(s) 660, 918, 1060, 1363, 1666, 2126, 2729, 2739
BseYI CCCAGC 2 cut(s) 617, 2471
Bsh1236I CGCG 2 cut(s) 404, 2786
BshFI GGCC 8 cut(s) 175, 531, 622, 636, 772, 780, 1238, 1537
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 4 cut(s) 555, 1376, 1803, 2798
BsiHKCI CYCGRG 2 cut(s) 176, 258
BsiSI CCGG 5 cut(s) 115, 177, 342, 558, 1597
BslFI GGGAC 5 cut(s) 271, 318, 810, 1130, 1240
BsmAI GTCTC 6 cut(s) 216, 1266, 1822, 2603, 2898, 3150
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 5 cut(s) 271, 318, 810, 1130, 1240
BsnI GGCC 8 cut(s) 175, 531, 622, 636, 772, 780, 1238, 1537
Bso31I GGTCTC 2 cut(s) 1266, 1822
BsoBI CYCGRG 2 cut(s) 176, 258
Bsp120I GGGCCC 1 cut(s) 770
Bsp1286I GDGCHC 5 cut(s) 555, 774, 1376, 1803, 2798
Bsp13I TCCGGA 1 cut(s) 114
Bsp1720I GCTNAGC 1 cut(s) 2792
Bsp68I TCGCGA 1 cut(s) 2786
BspANI GGCC 8 cut(s) 175, 531, 622, 636, 772, 780, 1238, 1537
BspCNI CTCAG 9 cut(s) 1512, 1818, 1901, 2349, 2426, 2591, 2784, 2889, 3137
BspDI ATCGAT 1 cut(s) 273
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 2 cut(s) 404, 2786
BspHI TCATGA 2 cut(s) 1037, 2943
BspLI GGNNCC 8 cut(s) 210, 416, 772, 1118, 1419, 2016, 2584, 2893
BspMAI CTGCAG 2 cut(s) 1656, 2013
BspMI ACCTGC 2 cut(s) 1758, 2016
BspQI GCTCTTC 2 cut(s) 1202, 1728
BspTI CTTAAG 1 cut(s) 1216
BspTNI GGTCTC 2 cut(s) 1266, 1822
BsrDI GCAATG 1 cut(s) 1470
BsrFI RCCGGY 1 cut(s) 557
BssAI RCCGGY 1 cut(s) 557
BssNI GRCGYC 1 cut(s) 851
BssT1I CCWWGG 3 cut(s) 738, 1112, 3126
Bst2UI CCWGG 7 cut(s) 233, 369, 1789, 2457, 2642, 2675, 2713
Bst6I CTCTTC 4 cut(s) 659, 1202, 1728, 2973
BstACI GRCGYC 1 cut(s) 851
BstAFI CTTAAG 1 cut(s) 1216
BstBAI YACGTR 2 cut(s) 27, 83
BstC8I GCNNGC 3 cut(s) 487, 555, 559
BstENI CCTNNNNNAGG 1 cut(s) 1542
BstFNI CGCG 2 cut(s) 404, 2786
BstHHI GCGC 2 cut(s) 880, 1223
BstMAI GTCTC 6 cut(s) 216, 1266, 1822, 2603, 2898, 3150
BstMWI GCNNNNNNNGC 7 cut(s) 682, 912, 926, 1218, 1744, 2783, 2802
BstNI CCWGG 7 cut(s) 233, 369, 1789, 2457, 2642, 2675, 2713
BstNSI RCATGY 4 cut(s) 1300, 1412, 2560, 3076
BstPAI GACNNNNGTC 2 cut(s) 83, 2910
BstSFI CTRYAG 3 cut(s) 1652, 2009, 2615
BstSLI GKGCMC 2 cut(s) 774, 1376
BstUI CGCG 2 cut(s) 404, 2786
BstV1I GCAGC 8 cut(s) 660, 918, 1060, 1363, 1666, 2126, 2729, 2739
BstV2I GAAGAC 2 cut(s) 1730, 2558
BstX2I RGATCY 5 cut(s) 295, 414, 449, 1708, 1897
BstXI CCANNNNNNTGG 2 cut(s) 375, 1492
BstYI RGATCY 5 cut(s) 295, 414, 449, 1708, 1897
Bsu15I ATCGAT 1 cut(s) 273
BsuI GTATCC 1 cut(s) 3186
BsuRI GGCC 8 cut(s) 175, 531, 622, 636, 772, 780, 1238, 1537
BsuTUI ATCGAT 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 2801
BtrI CACGTC 3 cut(s) 12, 226, 866
BtsI GCAGTG 2 cut(s) 1070, 2412
BtsIMutI CAGTG 9 cut(s) 703, 1070, 1139, 1625, 1871, 2208, 2412, 2762, 3069
BtuMI TCGCGA 1 cut(s) 2786
BveI ACCTGC 2 cut(s) 1758, 2016
Cac8I GCNNGC 3 cut(s) 487, 555, 559
CciI TCATGA 2 cut(s) 1037, 2943
CfoI GCGC 2 cut(s) 880, 1223
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 8 cut(s) 174, 209, 620, 634, 770, 771, 1117, 2709
Cfr9I CCCGGG 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 273
CseI GACGC 3 cut(s) 679, 739, 1582
Csp6I GTAC 9 cut(s) 24, 644, 1274, 1332, 1954, 2419, 2623, 2653, 3116
CviQI GTAC 9 cut(s) 24, 644, 1274, 1332, 1954, 2419, 2623, 2653, 3116
DraI TTTAAA 3 cut(s) 1682, 1704, 2537
EaeI YGGCCR 1 cut(s) 1236
Eam1104I CTCTTC 4 cut(s) 659, 1202, 1728, 2973
EarI CTCTTC 4 cut(s) 659, 1202, 1728, 2973
EciI GGCGGA 3 cut(s) 988, 1604, 2495
Ecl136II GAGCTC 1 cut(s) 2796
Eco130I CCWWGG 3 cut(s) 738, 1112, 3126
Eco24I GRGCYC 2 cut(s) 774, 2798
Eco31I GGTCTC 2 cut(s) 1266, 1822
Eco47I GGWCC 3 cut(s) 209, 1117, 2709
Eco53kI GAGCTC 1 cut(s) 2796
Eco57I CTGAAG 7 cut(s) 1097, 1142, 1931, 2267, 2363, 2594, 2937
Eco72I CACGTG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 176, 258
EcoICRI GAGCTC 1 cut(s) 2796
EcoNI CCTNNNNNAGG 1 cut(s) 1542
EcoO109I RGGNCCY 3 cut(s) 209, 771, 1117
EcoRII CCWGG 7 cut(s) 231, 367, 1787, 2455, 2640, 2673, 2711
EcoT14I CCWWGG 3 cut(s) 738, 1112, 3126
EcoT22I ATGCAT 1 cut(s) 2441
EcoT38I GRGCYC 2 cut(s) 774, 2798
ErhI CCWWGG 3 cut(s) 738, 1112, 3126
Esp3I CGTCTC 1 cut(s) 216
FalI AAGNNNNNCTT 6 cut(s) 1196, 1228, 1199, 1231, 1740, 1772
FaqI GGGAC 5 cut(s) 271, 318, 810, 1130, 1240
FauI CCCGC 2 cut(s) 166, 199
FauNDI CATATG 2 cut(s) 723, 2897
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 477
FriOI GRGCYC 2 cut(s) 774, 2798
FspBI CTAG 9 cut(s) 1168, 1528, 1691, 1730, 1778, 1835, 2423, 2699, 3127
GlaI GCGC 2 cut(s) 879, 1222
GsaI CCCAGC 2 cut(s) 621, 2475
GsuI CTGGAG 2 cut(s) 320, 2657
HaeIII GGCC 8 cut(s) 175, 531, 622, 636, 772, 780, 1238, 1537
HapII CCGG 5 cut(s) 115, 177, 342, 558, 1597
HgaI GACGC 3 cut(s) 679, 739, 1582
HhaI GCGC 2 cut(s) 880, 1223
Hin1I GRCGYC 1 cut(s) 851
Hin6I GCGC 2 cut(s) 878, 1221
HinP1I GCGC 2 cut(s) 878, 1221
HincII GTYRAC 2 cut(s) 467, 2915
HindII GTYRAC 2 cut(s) 467, 2915
HindIII AAGCTT 1 cut(s) 2606
HinfI GANTC 9 cut(s) 118, 954, 1164, 1726, 2104, 2482, 2545, 2733, 3201
HpaII CCGG 5 cut(s) 115, 177, 342, 558, 1597
HphI GGTGA 7 cut(s) 537, 556, 1083, 2057, 2129, 2398, 2660
Hpy166II GTNNAC 7 cut(s) 467, 478, 1374, 1783, 2709, 2915, 3047
Hpy8I GTNNAC 7 cut(s) 467, 478, 1374, 1783, 2709, 2915, 3047
Hpy99I CGWCG 5 cut(s) 13, 155, 312, 566, 856
HpyCH4IV ACGT 8 cut(s) 11, 26, 82, 225, 851, 865, 1330, 1841
HpyF10VI GCNNNNNNNGC 7 cut(s) 682, 912, 926, 1218, 1744, 2783, 2802
HpySE526I ACGT 8 cut(s) 11, 26, 82, 225, 851, 865, 1330, 1841
Hsp92I GRCGYC 1 cut(s) 851
HspAI GCGC 2 cut(s) 878, 1221
Kpn2I TCCGGA 1 cut(s) 114
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 42
LguI GCTCTTC 2 cut(s) 1202, 1728
LmnI GCTCC 3 cut(s) 2014, 2582, 2897
Lsp1109I GCAGC 8 cut(s) 660, 918, 1060, 1363, 1666, 2126, 2729, 2739
MaeI CTAG 9 cut(s) 1168, 1528, 1691, 1730, 1778, 1835, 2423, 2699, 3127
MaeII ACGT 8 cut(s) 11, 26, 82, 225, 851, 865, 1330, 1841
MaeIII GTNAC 9 cut(s) 54, 793, 847, 1071, 1572, 1837, 2207, 2767, 3211
MfeI CAATTG 1 cut(s) 373
MflI RGATCY 5 cut(s) 295, 414, 449, 1708, 1897
MhlI GDGCHC 5 cut(s) 555, 774, 1376, 1803, 2798
MlsI TGGCCA 1 cut(s) 1238
MluNI TGGCCA 1 cut(s) 1238
MlyI GAGTC 4 cut(s) 127, 1720, 2098, 3195
MmeI TCCRAC 3 cut(s) 566, 834, 1182
Mox20I TGGCCA 1 cut(s) 1238
Mph1103I ATGCAT 1 cut(s) 2441
MreI CGCCGGCG 1 cut(s) 557
MroI TCCGGA 1 cut(s) 114
MroNI GCCGGC 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 1211
MscI TGGCCA 1 cut(s) 1238
MslI CAYNNNNRTG 2 cut(s) 1042, 2557
Msp20I TGGCCA 1 cut(s) 1238
MspA1I CMGCKG 3 cut(s) 800, 1005, 2752
MspCI CTTAAG 1 cut(s) 1216
MspI CCGG 5 cut(s) 115, 177, 342, 558, 1597
MunI CAATTG 1 cut(s) 373
MvaI CCWGG 7 cut(s) 233, 369, 1789, 2457, 2642, 2675, 2713
MvnI CGCG 2 cut(s) 404, 2786
MwoI GCNNNNNNNGC 7 cut(s) 682, 912, 926, 1218, 1744, 2783, 2802
NaeI GCCGGC 1 cut(s) 559
NciI CCSGG 4 cut(s) 177, 178, 342, 1598
NdeI CATATG 2 cut(s) 723, 2897
NgoMIV GCCGGC 1 cut(s) 557
NlaIV GGNNCC 8 cut(s) 210, 416, 772, 1118, 1419, 2016, 2584, 2893
NmeAIII GCCGAG 1 cut(s) 906
NmuCI GTSAC 3 cut(s) 847, 1071, 1837
NruI TCGCGA 1 cut(s) 2786
NsiI ATGCAT 1 cut(s) 2441
NspI RCATGY 4 cut(s) 1300, 1412, 2560, 3076
PagI TCATGA 2 cut(s) 1037, 2943
PasI CCCWGGG 1 cut(s) 1788
PciI ACATGT 1 cut(s) 2556
PciSI GCTCTTC 2 cut(s) 1202, 1728
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 159
PdiI GCCGGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 1211
PfeI GAWTC 5 cut(s) 954, 1164, 2482, 2545, 2733
PflFI GACNNNGTC 1 cut(s) 2057
PleI GAGTC 4 cut(s) 126, 1720, 2098, 3195
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 4 cut(s) 126, 1720, 2098, 3195
Ppu21I YACGTR 2 cut(s) 27, 83
PpuMI RGGWCCY 2 cut(s) 209, 1117
PscI ACATGT 1 cut(s) 2556
PshAI GACNNNNGTC 2 cut(s) 83, 2910
PsiI TTATAA 1 cut(s) 1867
Psp124BI GAGCTC 1 cut(s) 2798
Psp5II RGGWCCY 2 cut(s) 209, 1117
Psp6I CCWGG 7 cut(s) 231, 367, 1787, 2455, 2640, 2673, 2711
PspCI CACGTG 1 cut(s) 83
PspFI CCCAGC 2 cut(s) 617, 2471
PspGI CCWGG 7 cut(s) 231, 367, 1787, 2455, 2640, 2673, 2711
PspN4I GGNNCC 8 cut(s) 210, 416, 772, 1118, 1419, 2016, 2584, 2893
PspOMI GGGCCC 1 cut(s) 770
PspPI GGNCC 8 cut(s) 174, 209, 620, 634, 770, 771, 1117, 2709
PspPPI RGGWCCY 2 cut(s) 209, 1117
PstI CTGCAG 2 cut(s) 1656, 2013
PsuI RGATCY 5 cut(s) 295, 414, 449, 1708, 1897
PsyI GACNNNGTC 1 cut(s) 2057
PvuII CAGCTG 1 cut(s) 2752
RruI TCGCGA 1 cut(s) 2786
RsaI GTAC 9 cut(s) 25, 645, 1275, 1333, 1955, 2420, 2624, 2654, 3117
RsaNI GTAC 9 cut(s) 24, 644, 1274, 1332, 1954, 2419, 2623, 2653, 3116
RseI CAYNNNNRTG 2 cut(s) 1042, 2557
SacI GAGCTC 1 cut(s) 2798
SapI GCTCTTC 2 cut(s) 1202, 1728
Sau96I GGNCC 8 cut(s) 174, 209, 620, 634, 770, 771, 1117, 2709
SbfI CCTGCAGG 1 cut(s) 2013
SchI GAGTC 4 cut(s) 127, 1720, 2098, 3195
SdaI CCTGCAGG 1 cut(s) 2013
SduI GDGCHC 5 cut(s) 555, 774, 1376, 1803, 2798
SfcI CTRYAG 3 cut(s) 1652, 2009, 2615
SgrAI CRCCGGYG 1 cut(s) 557
SinI GGWCC 3 cut(s) 209, 1117, 2709
SmaI CCCGGG 1 cut(s) 178
SmiI ATTTAAAT 1 cut(s) 2537
SmiMI CAYNNNNRTG 2 cut(s) 1042, 2557
SmlI CTYRAG 4 cut(s) 213, 910, 1216, 1335
SmoI CTYRAG 4 cut(s) 213, 910, 1216, 1335
SpeI ACTAGT 1 cut(s) 1527
Sse8387I CCTGCAGG 1 cut(s) 2013
SspI AATATT 2 cut(s) 2316, 2834
SspMI CTAG 9 cut(s) 1168, 1528, 1691, 1730, 1778, 1835, 2423, 2699, 3127
SstI GAGCTC 1 cut(s) 2798
StyI CCWWGG 3 cut(s) 738, 1112, 3126
SwaI ATTTAAAT 1 cut(s) 2537
TaiI ACGT 8 cut(s) 14, 29, 85, 228, 854, 868, 1333, 1844
TaqII GACCGA 1 cut(s) 913
TatI WGTACW 1 cut(s) 3115
TauI GCSGC 3 cut(s) 33, 407, 534
TfiI GAWTC 5 cut(s) 954, 1164, 2482, 2545, 2733
TscAI CASTG 9 cut(s) 710, 1070, 1146, 1625, 1878, 2208, 2412, 2769, 3069
TseFI GTSAC 3 cut(s) 847, 1071, 1837
TseI GCWGC 8 cut(s) 673, 906, 1048, 1351, 1654, 2114, 2742, 2752
Tsp45I GTSAC 3 cut(s) 847, 1071, 1837
TspGWI ACGGA 1 cut(s) 1176
TspMI CCCGGG 1 cut(s) 176
TspRI CASTG 9 cut(s) 710, 1070, 1146, 1625, 1878, 2208, 2412, 2769, 3069
Tth111I GACNNNGTC 1 cut(s) 2057
Vha464I CTTAAG 1 cut(s) 1216
VneI GTGCAC 1 cut(s) 1372
VpaK11BI GGWCC 3 cut(s) 209, 1117, 2709
XagI CCTNNNNNAGG 1 cut(s) 1542
XapI RAATTY 4 cut(s) 709, 2328, 3172, 3245
XbaI TCTAGA 1 cut(s) 1729
XceI RCATGY 4 cut(s) 1300, 1412, 2560, 3076
XmaI CCCGGG 1 cut(s) 176
XmaJI CCTAGG 1 cut(s) 3126
XmiI GTMKAC 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 1211
XspI CTAG 9 cut(s) 1168, 1528, 1691, 1730, 1778, 1835, 2423, 2699, 3127
ZraI GACGTC 1 cut(s) 852
Zsp2I ATGCAT 1 cut(s) 2441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.