Rroxscaffold_6G00412710

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014760
Physical Location & Seq
Forward (+)
35203366 .. 35209791
6426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412710.1

Sequence Viewer

Length: 2139 bp
ATGAGTGACGTCGGAGAACAGACGTGTCCGATATGCGCCGAGGAGATGGATTTGACCGATCAGCAGCTCAAGCCCTGCGAATGTGGCTATGAGGTCTGTCTGTGGTGCTGGAATCACATTATGGAGATGGCGGAGAAGGATGGAAGGGAAGGTCGGTGTCCGCTGTGCCGAACAACTTACGACAAAGAGAAGATCATGAGGGTGGCAGCAAACTGTAAAGCAGTACTTTCGAGCAGGTTGGTGACTGAAGTTAATCAGAAGCGGAAACAGAAAAAGCCCCCAAGGGACCTGAAGCAAAGAAGCATCTCACTGATGTTAGAGTATATAACTTACTCAAGTGAATATGAGGCAGCTCGATGTATTCAATCGGTGCACAGTTTTGTATTAGATGGTAATTCTTTGAGAGCATGTTTTGGAACCACAAAGTATTGCCATGCTTGGTTGAAAAATGTGCCTTGTAGCAATGCAGATTGTATGTATCTCCATGATTTTGGCTCTCAGGAAGATAGTTTTTCCAAAGATGAACTAGTTTCGGCCTTTGAAAGGAGTAAGGATTTACAGATTATCGGTGTTACAAATAATCTGCATCAGCGTCCAGGGAAAGGGTTACCTCCGCCAGTGGATGAGAATAGCAAATCAAAAATATCATCTGCAGCTAAACCAGTTGTCAAACATCCTTTAAATATCACGAGGGATGAGTTTAAGGGATCTTGTGCGGATGAAGACTCTAGAAGAGCTACTCCTGCAAGAACTTCTTGGGTCATGCAGGTTGCCCCTAGTTTACCCCTGGGAACAAGTGCTCAAATGCCTTCCTATCAAAAGCCTGAGACCTCTAGTGACGTTCATGCTCTTTCATCAGAAGTTGTAAGCACTGAAAGTTCTAACCTCAGAGTAAGATCTATTACATCTGAAGAAAGCTGTGAAGTGCGTTTTAATAGTTTGGATCATCTGGTACTGACCAAACAGAATAGTGAAGAAACTGGTCAAGTAGCCTTATCCAATAAACCTGCAGGAGCCTTTGTAGATAGCACTCTTGTAGGTATAACTTCTGGACATTGTCTATTACCAGATAAAGGTGTTGATCGAGATATTAAATCCACAGACTTTATAAGCAGCAGAAACTTAAATTGTCTATCACCAAACTTATCCAAAAGTTTATGTGACAACAAAGGAAGTAGCTTTGCTACATTTGATCCTTCCAGTGTGTTACCAAAGATGGGATTAGCAAAGTATTTGGAAGGGTCTGAAAACAATAAAGCCAGTATTGACTGCAATCTTTCTTCAGATTTAGGGGAGAGTGGCATAATCTCAAATATTTTGACGATGAATTTGGATGCACCTGAAGGTTCTTTAACTGAGCTTCATAATCTGGTTAATTTGTTGGGTGAAACTGATAAAGAAAGCAGTGTTCTCAGAGTACCAAGTTCAAGAAAAATGCATGAGAAAAAGCAGTCCAGGTTCTCATTTGCCCAGCAAGAGGATTCTTGTGATAACATATGGCATCCGCCCAAAGACTACTCTTCTTTATCTGATTTAAATAAGGATTCTTTCATAGATGTGGCGTCTTCAAATCTTCTCAGGAGCCGTTCTTTTTTGTCTCCTAAAGCTTCAGCTACAGAAGTACCTACTTCGATCCCACCAGGATTTTCAGTACCAAGAAGGGCATCACCTCCAGGTTTTTCTTCTCATGGGAGGTCTAGGAGGGTGGACCAGGCTTTTGACAGTTCTGTGAATCATTTGCTGCAACCAGCTGCTATGCCCACTGGTTACTCTGGCATCACTCGCGATGCTGAGCTCTTTGAGCCATCAATTTTTGATATTGGTAATGGAATATTGGAGAGAGGGAGAGCAACTTTATCACAGTATAATTCTTCTCAGCCAGATGCAAGGCTCCATATGATGAGACAGCAGTCAACTCTTACACAGCAAAACTTAGGATTTCATGACCACTTCAGGAATACATACACTTCCTTGCATGATGCACAACTACTTTCTCCACAGCATCCCAATCAATTTCAACCCAATCCATCTACATTTGCACAGTCCACCCCTCAACAGGTAGTGCTGCCGGTACTAGTATTGGCAAATATACTTCGGTCTTGTTTGGTGAACTTAATGGATGAGTCTAATGTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

712

Amino Acids

78.68

Weight (kDa)

6.12

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 9 - 61 4.9e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014760)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15190
malus_domestica MD12G1125800.v1.1
prunus_persica Prupe.6G242300_v2.0.a1 Prupe.6G242300_v2.0.a1
pyrus_communis pycom12g12400
rosa_chinensis RchiOBHm_Chr3g0468541
rosa_laevigata RLG00000024424
rosa_multiflora Rmu_sc0008735.1_g000001 Rmu_sc0009516.1_g000009
rosa_roxburghii Rroxscaffold_6G00412710
rosa_rugosa Rorug03G0095700 Rorug03G0095800 Rorug03G0095800
rosa_samantha Rh3AG144200 Rh3BG166400 Rh3DG165800
rosa_wichuraiana Rw3G013610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1109
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 3 cut(s) 225, 757, 1015
AccII CGCG 1 cut(s) 1785
AciI CCGC 6 cut(s) 131, 161, 262, 614, 716, 1505
AclWI GGATC 4 cut(s) 715, 951, 1187, 1627
AcsI RAATTY 1 cut(s) 1327
AcuI CTGAAG 7 cut(s) 267, 311, 930, 1266, 1362, 1593, 1936
AcyI GRCGYC 2 cut(s) 9, 1562
AfaI GTAC 6 cut(s) 225, 954, 1419, 1623, 1653, 2073
AfiI CCNNNNNNNGG 6 cut(s) 543, 602, 1073, 1217, 1477, 2056
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 6 cut(s) 365, 445, 542, 1428, 1569, 2018
AhlI ACTAGT 2 cut(s) 526, 2074
AjiI CACGTC 1 cut(s) 24
AjnI CCWGG 6 cut(s) 595, 786, 1454, 1639, 1672, 1710
Alw21I GWGCWC 3 cut(s) 375, 802, 1797
Alw26I GTCTC 3 cut(s) 821, 1602, 1897
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 4 cut(s) 715, 951, 1187, 1627
AoxI GGCC 1 cut(s) 534
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 8 cut(s) 64, 206, 350, 653, 1113, 1741, 1751, 2065
ApoI RAATTY 1 cut(s) 1327
ArsI GACNNNNNNTTYG 4 cut(s) 1312, 1344, 1700, 1732
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 286, 1708
AsuHPI GGTGA 5 cut(s) 253, 1128, 1397, 1659, 2119
AvaII GGWCC 2 cut(s) 286, 1708
BaeGI GKGCMC 1 cut(s) 375
BaeI ACNNNNGTAYC 2 cut(s) 1605, 1638
BanII GRGCYC 1 cut(s) 1797
BauI CACGAG 1 cut(s) 688
BbsI GAAGAC 2 cut(s) 729, 1557
Bbv12I GWGCWC 3 cut(s) 375, 802, 1797
BbvI GCAGC 8 cut(s) 76, 218, 362, 665, 1125, 1728, 1738, 2052
BccI CCATC 7 cut(s) 40, 121, 134, 383, 1210, 1813, 2035
BceAI ACGGC 1 cut(s) 1569
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
BcoDI GTCTC 3 cut(s) 821, 1602, 1897
BcuI ACTAGT 2 cut(s) 526, 2074
BfaI CTAG 6 cut(s) 527, 729, 777, 834, 1698, 2075
BfmI CTRYAG 3 cut(s) 651, 1008, 1614
BfuAI ACCTGC 3 cut(s) 225, 757, 1015
BglII AGATCT 1 cut(s) 896
BisI GCNGC 8 cut(s) 65, 207, 351, 654, 1114, 1742, 1752, 2066
BlpI GCTNAGC 1 cut(s) 1791
BlsI GCNGC 8 cut(s) 66, 208, 352, 655, 1115, 1743, 1753, 2067
BmcAI AGTACT 1 cut(s) 225
Bme1390I CCNGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
Bme18I GGWCC 2 cut(s) 286, 1708
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 286, 1708
BmiI GGNNCC 5 cut(s) 287, 418, 1015, 1583, 1892
BmrFI CCNGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
BoxI GACNNNNGTC 1 cut(s) 1909
BpiI GAAGAC 2 cut(s) 729, 1557
BpmI CTGGAG 1 cut(s) 1656
Bpu1102I GCTNAGC 1 cut(s) 1791
BpuEI CTTGAG 2 cut(s) 53, 319
BsaHI GRCGYC 2 cut(s) 9, 1562
BsaI GGTCTC 1 cut(s) 821
BsaJI CCNNGG 5 cut(s) 39, 281, 596, 786, 787
BsaXI ACNNNNNCTCC 2 cut(s) 1005, 1035
Bsc4I CCNNNNNNNGG 6 cut(s) 543, 602, 1073, 1217, 1477, 2056
Bse118I RCCGGY 1 cut(s) 2068
Bse1I ACTGG 6 cut(s) 617, 662, 985, 1200, 1260, 1768
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
BseDI CCNNGG 5 cut(s) 39, 281, 596, 786, 787
BseGI GGATG 9 cut(s) 145, 628, 673, 700, 724, 1339, 1501, 2002, 2125
BseLI CCNNNNNNNGG 6 cut(s) 543, 602, 1073, 1217, 1477, 2056
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 8 cut(s) 512, 816, 901, 1347, 1426, 1591, 1782, 1889
BseNI ACTGG 6 cut(s) 617, 662, 985, 1200, 1260, 1768
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 8 cut(s) 76, 218, 362, 665, 1125, 1728, 1738, 2052
BseYI CCCAGC 1 cut(s) 1470
Bsh1236I CGCG 1 cut(s) 1785
BshFI GGCC 1 cut(s) 536
BsiHKAI GWGCWC 3 cut(s) 375, 802, 1797
BsiSI CCGG 1 cut(s) 2069
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 6 cut(s) 543, 602, 1073, 1217, 1477, 2056
BsmAI GTCTC 3 cut(s) 821, 1602, 1897
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 1 cut(s) 536
Bso31I GGTCTC 1 cut(s) 821
Bsp1286I GDGCHC 3 cut(s) 375, 802, 1797
Bsp143I GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
Bsp1720I GCTNAGC 1 cut(s) 1791
Bsp68I TCGCGA 1 cut(s) 1785
BspACI CCGC 6 cut(s) 131, 161, 262, 614, 716, 1505
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 8 cut(s) 511, 817, 900, 1348, 1425, 1590, 1783, 1888
BspFNI CGCG 1 cut(s) 1785
BspHI TCATGA 2 cut(s) 195, 1942
BspLI GGNNCC 5 cut(s) 287, 418, 1015, 1583, 1892
BspMAI CTGCAG 2 cut(s) 655, 1012
BspMI ACCTGC 3 cut(s) 225, 757, 1015
BspPI GGATC 4 cut(s) 715, 951, 1187, 1627
BspQI GCTCTTC 1 cut(s) 727
BspTNI GGTCTC 1 cut(s) 821
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 2068
BsrI ACTGG 6 cut(s) 617, 662, 985, 1200, 1260, 1768
BssAI RCCGGY 1 cut(s) 2068
BssECI CCNNGG 5 cut(s) 39, 281, 596, 786, 787
BssMI GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
BssNI GRCGYC 2 cut(s) 9, 1562
BssSI CACGAG 1 cut(s) 688
BssT1I CCWWGG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 688
Bst2UI CCWGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
Bst4CI ACNGT 5 cut(s) 215, 377, 1724, 1863, 2043
Bst6I CTCTTC 2 cut(s) 727, 1525
BstACI GRCGYC 2 cut(s) 9, 1562
BstDEI CTNAG 9 cut(s) 498, 825, 887, 1356, 1412, 1577, 1791, 1875, 1933
BstEII GGTNACC 1 cut(s) 606
BstENI CCTNNNNNAGG 1 cut(s) 541
BstF5I GGATG 9 cut(s) 145, 628, 673, 700, 724, 1339, 1501, 2002, 2125
BstFNI CGCG 1 cut(s) 1785
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 8 cut(s) 61, 195, 710, 899, 946, 1084, 1195, 1635
BstMAI GTCTC 3 cut(s) 821, 1602, 1897
BstMBI GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
BstMWI GCNNNNNNNGC 5 cut(s) 70, 84, 743, 1782, 1801
BstNI CCWGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
BstNSI RCATGY 1 cut(s) 411
BstPAI GACNNNNGTC 1 cut(s) 1909
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 6 cut(s) 595, 786, 1454, 1639, 1672, 1710
BstSFI CTRYAG 3 cut(s) 651, 1008, 1614
BstSLI GKGCMC 1 cut(s) 375
BstUI CGCG 1 cut(s) 1785
BstV1I GCAGC 8 cut(s) 76, 218, 362, 665, 1125, 1728, 1738, 2052
BstV2I GAAGAC 2 cut(s) 729, 1557
BstX2I RGATCY 2 cut(s) 707, 896
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 2 cut(s) 707, 896
BsuRI GGCC 1 cut(s) 536
BtgZI GCGATG 1 cut(s) 1800
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 9 cut(s) 145, 628, 673, 700, 724, 1339, 1501, 2002, 2125
BtsI GCAGTG 1 cut(s) 1411
BtsIMutI CAGTG 6 cut(s) 308, 624, 870, 1207, 1411, 1761
BtuMI TCGCGA 1 cut(s) 1785
BveI ACCTGC 3 cut(s) 225, 757, 1015
CciI TCATGA 2 cut(s) 195, 1942
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 2068
Cfr13I GGNCC 2 cut(s) 286, 1708
CseI GACGC 2 cut(s) 581, 1551
Csp6I GTAC 6 cut(s) 224, 953, 1418, 1622, 1652, 2072
CviQI GTAC 6 cut(s) 224, 953, 1418, 1622, 1652, 2072
DdeI CTNAG 9 cut(s) 498, 825, 887, 1356, 1412, 1577, 1791, 1875, 1933
DpnI GATC 8 cut(s) 60, 194, 709, 898, 945, 1083, 1194, 1634
DpnII GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
DraI TTTAAA 2 cut(s) 681, 1536
Eam1104I CTCTTC 2 cut(s) 727, 1525
EarI CTCTTC 2 cut(s) 727, 1525
EciI GGCGGA 3 cut(s) 146, 603, 1494
Ecl136II GAGCTC 1 cut(s) 1795
Eco130I CCWWGG 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 1797
Eco31I GGTCTC 1 cut(s) 821
Eco47I GGWCC 2 cut(s) 286, 1708
Eco53kI GAGCTC 1 cut(s) 1795
Eco57I CTGAAG 7 cut(s) 267, 311, 930, 1266, 1362, 1593, 1936
Eco91I GGTNACC 1 cut(s) 606
EcoICRI GAGCTC 1 cut(s) 1795
EcoNI CCTNNNNNAGG 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 606
EcoRII CCWGG 6 cut(s) 595, 786, 1454, 1639, 1672, 1710
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 1440
EcoT38I GRGCYC 1 cut(s) 1797
ErhI CCWWGG 1 cut(s) 281
FalI AAGNNNNNCTT 4 cut(s) 210, 242, 739, 771
FaqI GGGAC 1 cut(s) 299
FauNDI CATATG 2 cut(s) 1496, 1896
Fnu4HI GCNGC 8 cut(s) 65, 207, 351, 654, 1114, 1742, 1752, 2066
FokI GGATG 9 cut(s) 152, 635, 660, 707, 731, 1346, 1488, 1989, 2132
FriOI GRGCYC 1 cut(s) 1797
Fsp4HI GCNGC 8 cut(s) 65, 207, 351, 654, 1114, 1742, 1752, 2066
FspBI CTAG 6 cut(s) 527, 729, 777, 834, 1698, 2075
GlaI GCGC 1 cut(s) 37
GluI GCNGC 8 cut(s) 65, 207, 351, 654, 1114, 1742, 1752, 2066
GsaI CCCAGC 1 cut(s) 1474
GsuI CTGGAG 1 cut(s) 1656
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 2069
HgaI GACGC 2 cut(s) 581, 1551
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 2 cut(s) 9, 1562
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 1914
HindII GTYRAC 1 cut(s) 1914
HindIII AAGCTT 1 cut(s) 1605
HinfI GANTC 6 cut(s) 112, 725, 1481, 1544, 1732, 2123
HpaII CCGG 1 cut(s) 2069
HphI GGTGA 5 cut(s) 253, 1128, 1397, 1659, 2119
Hpy166II GTNNAC 6 cut(s) 373, 782, 1708, 1914, 2046, 2110
Hpy8I GTNNAC 6 cut(s) 373, 782, 1708, 1914, 2046, 2110
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 8 cut(s) 130, 138, 143, 819, 1206, 1232, 1337, 1653
HpyCH4III ACNGT 5 cut(s) 215, 377, 1724, 1863, 2043
HpyCH4IV ACGT 3 cut(s) 9, 23, 840
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 84, 743, 1782, 1801
HpyF3I CTNAG 9 cut(s) 498, 825, 887, 1356, 1412, 1577, 1791, 1875, 1933
HpySE526I ACGT 3 cut(s) 9, 23, 840
Hsp92I GRCGYC 2 cut(s) 9, 1562
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
LguI GCTCTTC 1 cut(s) 727
LmnI GCTCC 3 cut(s) 1013, 1581, 1896
Lsp1109I GCAGC 8 cut(s) 76, 218, 362, 665, 1125, 1728, 1738, 2052
MaeI CTAG 6 cut(s) 527, 729, 777, 834, 1698, 2075
MaeII ACGT 3 cut(s) 9, 23, 840
MaeIII GTNAC 9 cut(s) 5, 241, 571, 606, 836, 1160, 1206, 1766, 2131
MalI GATC 8 cut(s) 60, 194, 709, 898, 945, 1083, 1194, 1634
MboI GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
MflI RGATCY 2 cut(s) 707, 896
MhlI GDGCHC 3 cut(s) 375, 802, 1797
MluCI AATT 7 cut(s) 394, 1126, 1327, 1375, 1809, 1867, 2012
MlyI GAGTC 2 cut(s) 719, 2132
Mph1103I ATGCAT 1 cut(s) 1440
MslI CAYNNNNRTG 2 cut(s) 200, 1556
MspA1I CMGCKG 2 cut(s) 163, 1751
MspI CCGG 1 cut(s) 2069
MspR9I CCNGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
MvaI CCWGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
MvnI CGCG 1 cut(s) 1785
MwoI GCNNNNNNNGC 5 cut(s) 70, 84, 743, 1782, 1801
NdeI CATATG 2 cut(s) 1496, 1896
NdeII GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
NlaIV GGNNCC 5 cut(s) 287, 418, 1015, 1583, 1892
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 4 cut(s) 5, 241, 836, 1160
NruI TCGCGA 1 cut(s) 1785
NsiI ATGCAT 1 cut(s) 1440
NspI RCATGY 1 cut(s) 411
PagI TCATGA 2 cut(s) 195, 1942
PasI CCCWGGG 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 727
PfeI GAWTC 4 cut(s) 112, 1481, 1544, 1732
PflFI GACNNNGTC 1 cut(s) 1056
PkrI GCNGC 8 cut(s) 66, 208, 352, 655, 1115, 1743, 1753, 2067
PleI GAGTC 2 cut(s) 719, 2131
PpsI GAGTC 2 cut(s) 719, 2131
PpuMI RGGWCCY 1 cut(s) 286
PshAI GACNNNNGTC 1 cut(s) 1909
PsiI TTATAA 1 cut(s) 1109
Psp124BI GAGCTC 1 cut(s) 1797
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 6 cut(s) 595, 786, 1454, 1639, 1672, 1710
PspEI GGTNACC 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 1470
PspGI CCWGG 6 cut(s) 595, 786, 1454, 1639, 1672, 1710
PspN4I GGNNCC 5 cut(s) 287, 418, 1015, 1583, 1892
PspPI GGNCC 2 cut(s) 286, 1708
PspPPI RGGWCCY 1 cut(s) 286
PstI CTGCAG 2 cut(s) 655, 1012
PsuI RGATCY 2 cut(s) 707, 896
PsyI GACNNNGTC 1 cut(s) 1056
PvuII CAGCTG 1 cut(s) 1751
RruI TCGCGA 1 cut(s) 1785
RsaI GTAC 6 cut(s) 225, 954, 1419, 1623, 1653, 2073
RsaNI GTAC 6 cut(s) 224, 953, 1418, 1622, 1652, 2072
RseI CAYNNNNRTG 2 cut(s) 200, 1556
SacI GAGCTC 1 cut(s) 1797
SapI GCTCTTC 1 cut(s) 727
SatI GCNGC 8 cut(s) 65, 207, 351, 654, 1114, 1742, 1752, 2066
Sau3AI GATC 8 cut(s) 58, 192, 707, 896, 943, 1081, 1192, 1632
Sau96I GGNCC 2 cut(s) 286, 1708
SbfI CCTGCAGG 1 cut(s) 1012
ScaI AGTACT 1 cut(s) 225
SchI GAGTC 2 cut(s) 719, 2132
ScrFI CCNGG 6 cut(s) 597, 788, 1456, 1641, 1674, 1712
SdaI CCTGCAGG 1 cut(s) 1012
SduI GDGCHC 3 cut(s) 375, 802, 1797
SfcI CTRYAG 3 cut(s) 651, 1008, 1614
SinI GGWCC 2 cut(s) 286, 1708
SmiI ATTTAAAT 1 cut(s) 1536
SmiMI CAYNNNNRTG 2 cut(s) 200, 1556
SmlI CTYRAG 2 cut(s) 68, 334
SmoI CTYRAG 2 cut(s) 68, 334
SpeI ACTAGT 2 cut(s) 526, 2074
Sse8387I CCTGCAGG 1 cut(s) 1012
Sse9I AATT 7 cut(s) 394, 1126, 1327, 1375, 1809, 1867, 2012
SsiI CCGC 6 cut(s) 131, 161, 262, 614, 716, 1505
SspI AATATT 2 cut(s) 1315, 1833
SspMI CTAG 6 cut(s) 527, 729, 777, 834, 1698, 2075
SstI GAGCTC 1 cut(s) 1797
StyD4I CCNGG 6 cut(s) 595, 786, 1454, 1639, 1672, 1710
StyI CCWWGG 1 cut(s) 281
SwaI ATTTAAAT 1 cut(s) 1536
TaaI ACNGT 5 cut(s) 215, 377, 1724, 1863, 2043
TaiI ACGT 3 cut(s) 12, 26, 843
TaqI TCGA 4 cut(s) 230, 355, 1084, 1631
TaqII GACCGA 2 cut(s) 71, 2085
TasI AATT 7 cut(s) 394, 1126, 1327, 1375, 1809, 1867, 2012
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 4 cut(s) 112, 1481, 1544, 1732
TscAI CASTG 6 cut(s) 315, 624, 877, 1207, 1411, 1768
TseFI GTSAC 4 cut(s) 5, 241, 836, 1160
TseI GCWGC 8 cut(s) 64, 206, 350, 653, 1113, 1741, 1751, 2065
Tsp45I GTSAC 4 cut(s) 5, 241, 836, 1160
TspDTI ATGAA 8 cut(s) 537, 735, 833, 843, 1340, 1352, 1540, 1931
TspRI CASTG 6 cut(s) 315, 624, 877, 1207, 1411, 1768
Tth111I GACNNNGTC 1 cut(s) 1056
VneI GTGCAC 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 286, 1708
XagI CCTNNNNNAGG 1 cut(s) 541
XapI RAATTY 1 cut(s) 1327
XbaI TCTAGA 1 cut(s) 728
XceI RCATGY 1 cut(s) 411
XspI CTAG 6 cut(s) 527, 729, 777, 834, 1698, 2075
ZraI GACGTC 1 cut(s) 10
ZrmI AGTACT 1 cut(s) 225
Zsp2I ATGCAT 1 cut(s) 1440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.