Rh3BG166400

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014760
Physical Location & Seq
Reverse (-)
14325456 .. 14332151
6696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG166400.1

Sequence Viewer

Length: 1881 bp
ATGAGTGACGTCGGAGAACAGACGTGTCCGATATGCGCCGAGGAGATGGATTTGACCGATCAGCAGCTCAAGCCCTGCGAATGTGGCTATGAGGTCTGTCTGTGGTGCTGGAATCACATTATGGAGATGGCGGAGAAGGATGGAAGGGAAGGTCGGTGTCCGCTGTGCCGAACAACTTACGACAAAGAGAAGATCATGAGGGTGGCAGCAAACTGTAAAGCAGTGTTGGTGACTGAAGTTAATCAGAAGCGGAAACAGAAAAAGCCCCCCAAGGGACCTGAAGCAAAGAAGCATCTCACTGATGTTAGAGTTCTCCAACGGAATCTAGCTTACATAATTGGATTACCTCTTAACCTTGCAAAAGAAGAGCTTCTTAAGCGCAGGGACTATTTTGGCCAGTATGGAAAGGTGTTGAAGGTCTCTATTTCTCGTACATCGACTGGGGATATTCAACATGCTACTAACAACAGTTGTTGTGTGTATATAACGTACTCAAGTGAATATGAGGCAGCTCGATGTATTCAATCGGTGCACAGTTTTGTATTAGATGGTAATTCTTTGAGAGCATGTTTTGGAACCACAAAGTATTGCCATGCTTGGTTGAAAAATGTGCCTTGTAGCAATGCAGATTGTATGTATCTCCATGATTTTGGCTCTCAGGAAGATAGTTTTTCCAAAGATGAACTAGTTTCGGCCTTTGAAAGGAGTAAGGATTTACAGATTATCGGTGTTACAAATAATCTGCATCAGCGTCCAGGGAAAGGGTTACCTCCGCCAGTGGATGAGAATAGCAAATCAAAAATATCATCTGCAGCTAAACCACTTGTCAAACATCCTTTAAATATCACTAGGGATGAGTTTAAGGGATCTTGTGCGGATGAAGACTCTAGAAGAGCTACTCCTGCAAGAACTTCTTGGTATAAAATATCATGGGTCATGCAGGTTGCCCCTAGTTTACCCCTGGGAACAAGTGCTCAAATGCCTTCCTATCAAAAGGCTGAGACCTCTAGTGATGTTCATGCTGTTTCATCAGAAGTTGTAAGTACTGAAAGTTCTAACCTCAGAGTAAGATCAATTACATCTGAAGAAAGCTGTGAAGTGCGTTTTAATAGTTTGGATCATCTGGTACCGACCAAACAGAATAGTGAAGAAACTGGTCAAGTAGCCTTATCAAATAAACCTGCAGGAGCCTTTGTAGATAGCACTCTTGTAGGTATAACTTCTGGACATTGTCTATCACCAGATAAAGGTGTTGATCGAGATATTAAATCCAGAGACTTTATAAGCAGCAGAAACTTAAATTGTCTATCACCAAACTTATCCAAAAGTTTATGTGATAACAAAGGAAGTAGCTTTGCTACATTTGATCCTTCCAGTGTGTTACCAAAGATGGGATTAGCGAAGTATTCGGAAGGGTCTGAAAACAATAAAGCCAGTATTGACTGCAATCTTTCTTCAGATTTAGGGGAGAGTGGCATAATCTCAAATATTTTGACGATGAATTTGGATGCACCTGAAGGTTCTTTAACTGAGCTTCATAATCTGGTTAATTTGTTGGGTGAAACTGATAAAGAAAGCAGTGTTCTCAGAGTACCAAGTTCAAGAAAAATGCATGAGAAAAAGCAGTCCAGGTTCTCATTTGCCCAGCAAGAGGATTCTTGTGATAATATATGGCATCCGCCCAAAGACTACTCTTCTTTATCTGATTTAAATAAGGATTCTTTCATACATGTGGGGTCTTCAAATCTTCTCAGGAGCTGTTCTTTTTTGTCTCCTAAAGCTTCAGGTTTGTATCTTGCATACTCTATATACATTACTGTAATTCGGTCTTTTCCTGATCTACTGGTTTGCCTTGTCACTTGTTTATTTGATTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

626

Amino Acids

69.37

Weight (kDa)

6.58

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 9 - 61 4.2e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014760)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15190
malus_domestica MD12G1125800.v1.1
prunus_persica Prupe.6G242300_v2.0.a1 Prupe.6G242300_v2.0.a1
pyrus_communis pycom12g12400
rosa_chinensis RchiOBHm_Chr3g0468541
rosa_laevigata RLG00000024424
rosa_multiflora Rmu_sc0008735.1_g000001 Rmu_sc0009516.1_g000009
rosa_roxburghii Rroxscaffold_6G00412710
rosa_rugosa Rorug03G0095700 Rorug03G0095800 Rorug03G0095800
rosa_samantha Rh3AG144200 Rh3BG166400 Rh3DG165800
rosa_wichuraiana Rw3G013610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1283
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 2 cut(s) 931, 1189
Acc65I GGTACC 1 cut(s) 1126
AccB1I GGYRCC 1 cut(s) 1126
AciI CCGC 6 cut(s) 131, 161, 250, 773, 875, 1679
AclWI GGATC 3 cut(s) 874, 1125, 1361
AcoI YGGCCR 1 cut(s) 394
AcsI RAATTY 1 cut(s) 1501
AcuI CTGAAG 6 cut(s) 255, 300, 1104, 1440, 1536, 1767
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 5 cut(s) 433, 491, 1045, 1128, 1593
AfiI CCNNNNNNNGG 6 cut(s) 272, 702, 761, 1247, 1391, 1651
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 23, 1729
AgsI TTSAA 7 cut(s) 415, 452, 524, 604, 701, 1602, 1743
AhlI ACTAGT 1 cut(s) 685
AjiI CACGTC 1 cut(s) 24
AjnI CCWGG 3 cut(s) 754, 960, 1628
Alw21I GWGCWC 2 cut(s) 534, 976
Alw26I GTCTC 4 cut(s) 424, 995, 1269, 1776
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 3 cut(s) 874, 1125, 1361
AlwNI CAGNNNCTG 1 cut(s) 1758
AoxI GGCC 2 cut(s) 394, 693
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 5 cut(s) 64, 206, 509, 812, 1287
ApoI RAATTY 1 cut(s) 1501
ArsI GACNNNNNNTTYG 2 cut(s) 1486, 1518
Asp700I GAANNNNTTC 1 cut(s) 369
Asp718I GGTACC 1 cut(s) 1126
AspLEI GCGC 2 cut(s) 38, 381
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 4 cut(s) 241, 1230, 1302, 1571
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 1126
BbsI GAAGAC 2 cut(s) 888, 1731
Bbv12I GWGCWC 2 cut(s) 534, 976
BbvI GCAGC 5 cut(s) 76, 218, 521, 824, 1299
BccI CCATC 5 cut(s) 40, 121, 134, 542, 1384
BciT130I CCWGG 3 cut(s) 756, 962, 1630
BcoDI GTCTC 4 cut(s) 424, 995, 1269, 1776
BcuI ACTAGT 1 cut(s) 685
BfaI CTAG 6 cut(s) 326, 686, 849, 888, 951, 1008
BfmI CTRYAG 2 cut(s) 810, 1182
BfrI CTTAAG 1 cut(s) 374
BfuAI ACCTGC 2 cut(s) 931, 1189
BisI GCNGC 5 cut(s) 65, 207, 510, 813, 1288
BlsI GCNGC 5 cut(s) 66, 208, 511, 814, 1289
BmcAI AGTACT 1 cut(s) 1045
Bme1390I CCNGG 3 cut(s) 756, 962, 1630
Bme18I GGWCC 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 4 cut(s) 276, 577, 1128, 1189
BmrFI CCNGG 3 cut(s) 756, 962, 1630
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 4 cut(s) 301, 754, 1498, 1684
BmuI ACTGGG 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 888, 1731
BpuEI CTTGAG 2 cut(s) 53, 478
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 2 cut(s) 424, 995
BsaJI CCNNGG 5 cut(s) 39, 270, 755, 960, 961
BsaXI ACNNNNNCTCC 2 cut(s) 1179, 1209
Bsc4I CCNNNNNNNGG 6 cut(s) 272, 702, 761, 1247, 1391, 1651
Bse1I ACTGG 7 cut(s) 397, 445, 776, 1159, 1374, 1434, 1848
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 3 cut(s) 756, 962, 1630
BseDI CCNNGG 5 cut(s) 39, 270, 755, 960, 961
BseGI GGATG 7 cut(s) 145, 787, 832, 859, 883, 1513, 1675
BseLI CCNNNNNNNGG 6 cut(s) 272, 702, 761, 1247, 1391, 1651
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 6 cut(s) 671, 990, 1075, 1521, 1600, 1765
BseNI ACTGG 7 cut(s) 397, 445, 776, 1159, 1374, 1434, 1848
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 5 cut(s) 76, 218, 521, 824, 1299
BseYI CCCAGC 1 cut(s) 1644
BshFI GGCC 2 cut(s) 396, 695
BshNI GGYRCC 1 cut(s) 1126
BsiHKAI GWGCWC 2 cut(s) 534, 976
BslFI GGGAC 2 cut(s) 288, 398
BslI CCNNNNNNNGG 6 cut(s) 272, 702, 761, 1247, 1391, 1651
BsmAI GTCTC 4 cut(s) 424, 995, 1269, 1776
BsmFI GGGAC 2 cut(s) 288, 398
BsnI GGCC 2 cut(s) 396, 695
Bso31I GGTCTC 2 cut(s) 424, 995
Bsp1286I GDGCHC 2 cut(s) 534, 976
Bsp143I GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
BspACI CCGC 6 cut(s) 131, 161, 250, 773, 875, 1679
BspANI GGCC 2 cut(s) 396, 695
BspCNI CTCAG 6 cut(s) 670, 991, 1074, 1522, 1599, 1764
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 4 cut(s) 276, 577, 1128, 1189
BspMAI CTGCAG 2 cut(s) 814, 1186
BspMI ACCTGC 2 cut(s) 931, 1189
BspPI GGATC 3 cut(s) 874, 1125, 1361
BspQI GCTCTTC 2 cut(s) 360, 886
BspT107I GGYRCC 1 cut(s) 1126
BspTI CTTAAG 1 cut(s) 374
BspTNI GGTCTC 2 cut(s) 424, 995
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 7 cut(s) 397, 445, 776, 1159, 1374, 1434, 1848
BssECI CCNNGG 5 cut(s) 39, 270, 755, 960, 961
BssMI GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 3 cut(s) 756, 962, 1630
Bst4CI ACNGT 4 cut(s) 215, 470, 536, 1819
Bst6I CTCTTC 3 cut(s) 360, 886, 1699
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 374
BstDEI CTNAG 6 cut(s) 657, 999, 1061, 1530, 1586, 1751
BstEII GGTNACC 1 cut(s) 765
BstENI CCTNNNNNAGG 1 cut(s) 700
BstF5I GGATG 7 cut(s) 145, 787, 832, 859, 883, 1513, 1675
BstHHI GCGC 2 cut(s) 38, 381
BstKTI GATC 8 cut(s) 61, 195, 869, 1073, 1120, 1258, 1369, 1840
BstMAI GTCTC 4 cut(s) 424, 995, 1269, 1776
BstMBI GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
BstMWI GCNNNNNNNGC 4 cut(s) 70, 84, 376, 902
BstNI CCWGG 3 cut(s) 756, 962, 1630
BstNSI RCATGY 3 cut(s) 458, 570, 1733
BstPI GGTNACC 1 cut(s) 765
BstSCI CCNGG 3 cut(s) 754, 960, 1628
BstSFI CTRYAG 2 cut(s) 810, 1182
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 5 cut(s) 76, 218, 521, 824, 1299
BstV2I GAAGAC 2 cut(s) 888, 1731
BstX2I RGATCY 1 cut(s) 866
BstXI CCANNNNNNTGG 1 cut(s) 650
BstYI RGATCY 1 cut(s) 866
BsuRI GGCC 2 cut(s) 396, 695
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 7 cut(s) 145, 787, 832, 859, 883, 1513, 1675
BtsI GCAGTG 2 cut(s) 228, 1585
BtsIMutI CAGTG 5 cut(s) 228, 297, 783, 1381, 1585
BveI ACCTGC 2 cut(s) 931, 1189
CaiI CAGNNNCTG 1 cut(s) 1758
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 38, 381
Cfr13I GGNCC 1 cut(s) 275
CseI GACGC 1 cut(s) 740
Csp6I GTAC 5 cut(s) 432, 490, 1044, 1127, 1592
CviQI GTAC 5 cut(s) 432, 490, 1044, 1127, 1592
DdeI CTNAG 6 cut(s) 657, 999, 1061, 1530, 1586, 1751
DpnI GATC 8 cut(s) 60, 194, 868, 1072, 1119, 1257, 1368, 1839
DpnII GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
DraI TTTAAA 2 cut(s) 840, 1710
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 3 cut(s) 360, 886, 1699
EarI CTCTTC 3 cut(s) 360, 886, 1699
EciI GGCGGA 3 cut(s) 146, 762, 1668
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 2 cut(s) 424, 995
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 6 cut(s) 255, 300, 1104, 1440, 1536, 1767
Eco91I GGTNACC 1 cut(s) 765
EcoNI CCTNNNNNAGG 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 765
EcoRII CCWGG 3 cut(s) 754, 960, 1628
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 1614
ErhI CCWWGG 1 cut(s) 270
FalI AAGNNNNNCTT 6 cut(s) 354, 386, 357, 389, 898, 930
FaqI GGGAC 2 cut(s) 288, 398
Fnu4HI GCNGC 5 cut(s) 65, 207, 510, 813, 1288
FokI GGATG 7 cut(s) 152, 794, 819, 866, 890, 1520, 1662
Fsp4HI GCNGC 5 cut(s) 65, 207, 510, 813, 1288
FspBI CTAG 6 cut(s) 326, 686, 849, 888, 951, 1008
GlaI GCGC 2 cut(s) 37, 380
GluI GCNGC 5 cut(s) 65, 207, 510, 813, 1288
GsaI CCCAGC 1 cut(s) 1648
HaeIII GGCC 2 cut(s) 396, 695
HgaI GACGC 1 cut(s) 740
HhaI GCGC 2 cut(s) 38, 381
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 2 cut(s) 36, 379
HinP1I GCGC 2 cut(s) 36, 379
HindIII AAGCTT 1 cut(s) 1779
HinfI GANTC 5 cut(s) 112, 322, 884, 1655, 1718
HphI GGTGA 4 cut(s) 241, 1230, 1302, 1571
Hpy166II GTNNAC 2 cut(s) 532, 956
Hpy188III TCNNGA 9 cut(s) 196, 659, 888, 1224, 1259, 1272, 1602, 1753, 1835
Hpy8I GTNNAC 2 cut(s) 532, 956
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 8 cut(s) 130, 138, 143, 409, 993, 1380, 1406, 1511
HpyCH4III ACNGT 4 cut(s) 215, 470, 536, 1819
HpyCH4IV ACGT 3 cut(s) 9, 23, 488
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 84, 376, 902
HpyF3I CTNAG 6 cut(s) 657, 999, 1061, 1530, 1586, 1751
HpySE526I ACGT 3 cut(s) 9, 23, 488
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 2 cut(s) 36, 379
KpnI GGTACC 1 cut(s) 1130
Kzo9I GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
LguI GCTCTTC 2 cut(s) 360, 886
LmnI GCTCC 2 cut(s) 1187, 1755
Lsp1109I GCAGC 5 cut(s) 76, 218, 521, 824, 1299
LweI GCATC 4 cut(s) 301, 754, 1498, 1684
MaeI CTAG 6 cut(s) 326, 686, 849, 888, 951, 1008
MaeII ACGT 3 cut(s) 9, 23, 488
MaeIII GTNAC 6 cut(s) 5, 229, 730, 765, 1380, 1855
MalI GATC 8 cut(s) 60, 194, 868, 1072, 1119, 1257, 1368, 1839
MboI GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
MflI RGATCY 1 cut(s) 866
MhlI GDGCHC 2 cut(s) 534, 976
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 7 cut(s) 336, 553, 1074, 1300, 1501, 1549, 1821
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 9 cut(s) 34, 85, 192, 357, 499, 780, 1015, 1070, 1645
Mox20I TGGCCA 1 cut(s) 396
Mph1103I ATGCAT 1 cut(s) 1614
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 200, 1730
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 374
MspR9I CCNGG 3 cut(s) 756, 962, 1630
MvaI CCWGG 3 cut(s) 756, 962, 1630
MwoI GCNNNNNNNGC 4 cut(s) 70, 84, 376, 902
NdeII GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
NlaIV GGNNCC 4 cut(s) 276, 577, 1128, 1189
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 3 cut(s) 5, 229, 1855
NsiI ATGCAT 1 cut(s) 1614
NspI RCATGY 3 cut(s) 458, 570, 1733
PagI TCATGA 1 cut(s) 195
PasI CCCWGGG 1 cut(s) 961
PciI ACATGT 1 cut(s) 1729
PciSI GCTCTTC 2 cut(s) 360, 886
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 4 cut(s) 112, 322, 1655, 1718
PflFI GACNNNGTC 1 cut(s) 1230
PkrI GCNGC 5 cut(s) 66, 208, 511, 814, 1289
PleI GAGTC 1 cut(s) 878
PpsI GAGTC 1 cut(s) 878
PpuMI RGGWCCY 1 cut(s) 275
PscI ACATGT 1 cut(s) 1729
PsiI TTATAA 1 cut(s) 1283
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 3 cut(s) 754, 960, 1628
PspEI GGTNACC 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 1644
PspGI CCWGG 3 cut(s) 754, 960, 1628
PspN4I GGNNCC 4 cut(s) 276, 577, 1128, 1189
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
PsrI GAACNNNNNNTAC 2 cut(s) 1036, 1068
PstI CTGCAG 2 cut(s) 814, 1186
PstNI CAGNNNCTG 1 cut(s) 1758
PsuI RGATCY 1 cut(s) 866
PsyI GACNNNGTC 1 cut(s) 1230
RsaI GTAC 5 cut(s) 433, 491, 1045, 1128, 1593
RsaNI GTAC 5 cut(s) 432, 490, 1044, 1127, 1592
RseI CAYNNNNRTG 2 cut(s) 200, 1730
SapI GCTCTTC 2 cut(s) 360, 886
SatI GCNGC 5 cut(s) 65, 207, 510, 813, 1288
Sau3AI GATC 8 cut(s) 58, 192, 866, 1070, 1117, 1255, 1366, 1837
Sau96I GGNCC 1 cut(s) 275
SbfI CCTGCAGG 1 cut(s) 1186
ScaI AGTACT 1 cut(s) 1045
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 3 cut(s) 756, 962, 1630
SdaI CCTGCAGG 1 cut(s) 1186
SduI GDGCHC 2 cut(s) 534, 976
SfaNI GCATC 4 cut(s) 301, 754, 1498, 1684
SfcI CTRYAG 2 cut(s) 810, 1182
SinI GGWCC 1 cut(s) 275
SmiI ATTTAAAT 1 cut(s) 1710
SmiMI CAYNNNNRTG 2 cut(s) 200, 1730
SmlI CTYRAG 3 cut(s) 68, 374, 493
SmoI CTYRAG 3 cut(s) 68, 374, 493
SpeI ACTAGT 1 cut(s) 685
Sse8387I CCTGCAGG 1 cut(s) 1186
Sse9I AATT 7 cut(s) 336, 553, 1074, 1300, 1501, 1549, 1821
SsiI CCGC 6 cut(s) 131, 161, 250, 773, 875, 1679
SspI AATATT 1 cut(s) 1489
SspMI CTAG 6 cut(s) 326, 686, 849, 888, 951, 1008
StyD4I CCNGG 3 cut(s) 754, 960, 1628
StyI CCWWGG 1 cut(s) 270
SwaI ATTTAAAT 1 cut(s) 1710
TaaI ACNGT 4 cut(s) 215, 470, 536, 1819
TaiI ACGT 3 cut(s) 12, 26, 491
TaqI TCGA 3 cut(s) 437, 514, 1258
TaqII GACCGA 2 cut(s) 71, 1815
TasI AATT 7 cut(s) 336, 553, 1074, 1300, 1501, 1549, 1821
TatI WGTACW 1 cut(s) 1043
TfiI GAWTC 4 cut(s) 112, 322, 1655, 1718
TscAI CASTG 5 cut(s) 228, 304, 783, 1381, 1585
TseFI GTSAC 3 cut(s) 5, 229, 1855
TseI GCWGC 5 cut(s) 64, 206, 509, 812, 1287
Tsp45I GTSAC 3 cut(s) 5, 229, 1855
TspDTI ATGAA 7 cut(s) 696, 894, 1007, 1017, 1514, 1526, 1714
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 5 cut(s) 228, 304, 783, 1381, 1585
Tth111I GACNNNGTC 1 cut(s) 1230
Vha464I CTTAAG 1 cut(s) 374
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 700
XapI RAATTY 1 cut(s) 1501
XbaI TCTAGA 1 cut(s) 887
XceI RCATGY 3 cut(s) 458, 570, 1733
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 6 cut(s) 326, 686, 849, 888, 951, 1008
ZraI GACGTC 1 cut(s) 10
ZrmI AGTACT 1 cut(s) 1045
Zsp2I ATGCAT 1 cut(s) 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.