RLG00000024424

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014760
Physical Location & Seq
Forward (+)
35708217 .. 35714243
6027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024424

Sequence Viewer

Length: 2664 bp
ATGGGTTTGGTTTTCTCCTATCATATGTTTCCGATCGTTCGTGGGCATATAGCTTTGCAATTTTGGAAGATTGGGATTTTCTTATTGTGCTCTGTTAGCTTGTTGCGACAATTGGCAATCATAGCTTTGCAGAGGGCGGGATGCTGTTTGCCTTTTCCCTTTTTATCTTATCCTGCGATTTCCTCTTCTTCTTCCTCCACCACACTTTACTCTCTGGAAGCCATGAGTGACGTCGGAGACCAGACGTGTCCGATATGCGCCGAGGAGATGGATTTGACCGATCAGCAGCTCAAGCCCTGCGAATGTGGCTATGAGGTCTGTCTGTGGTGCTGGAATCACATTATGGAAATGTCGGAGAAGGATGGAAGGGAAGGTCGGTGTCCGCTGTGCCGAACAACTTACGACAAAGAGAAGATCATGAGGGTGGCAGCAAACTGTAAAGCAGTGTTGGTGACTGAAGTTAATCAGAAGCGGAAACAGAAAAGACCCCCCAAAGGACCTGAAGCAAAGAAGCATCTCACTGATGTTAGAGTTCTCCAACGGAATCTAGCTTACATAATTGGATTACCTCTTAACCTTGCAAAAGAAGAGCTTCTTAAGCGCAGGGACTATTTTGGCCAGTATGGAAAGGTGTTGAAGGTCTCTATTTCTCGTACATCGACTGGGGATATTCAACATGCTACGAACAACAGTTGTTGTGTGTATATAACGTACTCAAGTGAATATGAGGCAGCTCGATGTATTCAATCGGTGCACAGTTTTGTATTAGATGGTAATTCTTTGAGGGCATGTTTTGGAACCACAAAGTATTGCCATGCTTGGTTGAAAAATGTGCCTTGTAGCAATGCAGATTGTATGTATCTCCATGATTTTGGCTCTCAGGAAGATAGTTTTTCCAAAGATGAACTAGTTTCGGCCTTTGAAAGGAGTAAGGGTTTACAGATTATCGGTGTTACAAATAATCTGCATCAGCGTCCAGGGAAAGGGTTACCTCCACCGGTGGATGAGAATAGCAAATCAAAAATATCATCTGCAGCTAAACCACTTGTCAAACATCCTTTAAATATCACTAGGGATGAGTTTAAGGGATCTTGTGCAGATGAAGACTCTAGAAGAGCTACTCCTGCAAGAAATTCTTGGGTCATGCAGGTTGCCCCTAGTTTACCCCTGGGAACAAGTGCTCAAATGCCTTCCTATCAAAAGCCTGAGACCTCTAGTGACGTTCATGCTCTTTCATCAGAAGTTGTAAGCACTGAAAGTTCTAACCTCAGAGCAAGATCTATTACATCTGAAGAAAGCTGTGAAGTGCGTTTTAATAGTTTGGATCATCTGGTACTGACCAAACAGAATAGTGAAGAAACTGGTCAAGTAGCCGTATCAAATAAACCTGCAGGAGCCTTTGTAGATAGCACTCTTGTAGGTATAACTTCTGGACATTGTCTATCACCAGATAAAGGTGTTGATCGAGATATTAAATCCGCAGACTTTATAAGCAGCAGAAACTTAAATTGTCTATCACCAAACTTATCCAAAAGTTTATGCGATAACAAAGGAAGTAGCTTTGCTACATTTGATCCTTCCAGTGTGTTACCAAAGATGGGATTAGCGAAGTACTTGGAAGGGTCTGAAAACAATAAAGCCAGTATTGACTGCAATCTTTCTTCAGATTTAGGGGAGAGTGGCATAATCTCAAATATTTTGACGATGAATTTGGATGCACCTGAAGGTTCTTTAACTGAGCTTCATAATCTGGTTAATTTTTTGGGTGAAACTGATAAAGAAAGCAGTGTTCTCAGAGTACCAAGTTCAAGAAAAATGCATGAGAAAAAGCAGTCCAGGTTCTCATTTGCCCAGCAAGAGGATTCTTGTGATAATATATGGCATCCGCCCAAAGACTACTCTTCTTTATCTGATTTAAATAAGGATTCTTTCATACATTTGGAGTCTTCAAATCTTCTCAGGAGCCGTTCTTTTTTGTCTCCTAAAGCTTCAGCTACAGAAGTACCTACTTCAATCCCACCAGGATTTTCAGTACCTAGAAGGGCATCACCTCCAGGTTTTTCTTCTCATGGGAGGTCTAGGAGGGTGGACCAGGCTTTTGACAGTTCTGTGAATCATTTGCTGCAACCAGCTGCTATGCCCACTGGTTACTCTGGCATCACTCTCGATACTGAGCTCTTTGAGCCATCAATTTTTGATATTGGTAATGGAATATTGGAGAGAGGGAGAGCAACTTTATCACAGTATAATTCTTCTCAGCCAGATGCAAGGCTCCATATGATGAGACAGCAGTCAACTCTTACACAGCAAAACTTAGGATTTCACGACCACTTCAGGAATACACACTCTTCCTTGCATGATGCACGACTACTTTCTCCACAGCATCCCAATCAATTTCAACCCAATCCATCTACATTCGCACAGTCTACCCCTCAACAGGTCAGTGATATGCATGTATCAAATAGCCATTGGGTTCAATGGAATGGGGTCAAGAGTGCAAGCGATCTAGGAATATCAGAATTGCTGAGAAATGAGAGACTGGCATTTAACAAATTCATTCCTTGTTATGAAGATACGAAGACTCGATCAAGATATAAATATGCTATGATGGGTACGAGGGAACACGGATGTGCTGATACCATAGTTCGCATAAAAGCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

888

Amino Acids

98.44

Weight (kDa)

8.02

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 83 - 135 6.1e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014760)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15190
malus_domestica MD12G1125800.v1.1
prunus_persica Prupe.6G242300_v2.0.a1 Prupe.6G242300_v2.0.a1
pyrus_communis pycom12g12400
rosa_chinensis RchiOBHm_Chr3g0468541
rosa_laevigata RLG00000024424
rosa_multiflora Rmu_sc0008735.1_g000001 Rmu_sc0009516.1_g000009
rosa_roxburghii Rroxscaffold_6G00412710
rosa_rugosa Rorug03G0095700 Rorug03G0095800 Rorug03G0095800
rosa_samantha Rh3AG144200 Rh3BG166400 Rh3DG165800
rosa_wichuraiana Rw3G013610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1490
AatII GACGTC 1 cut(s) 234
Acc36I ACCTGC 2 cut(s) 1138, 1396
AccI GTMKAC 1 cut(s) 2426
AciI CCGC 5 cut(s) 137, 383, 472, 1479, 1886
AclWI GGATC 3 cut(s) 1096, 1332, 1568
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 3 cut(s) 1132, 1708, 2552
AcuI CTGAAG 7 cut(s) 477, 522, 1311, 1647, 1743, 1974, 2317
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 8 cut(s) 655, 713, 1335, 1613, 1800, 2004, 2034, 2614
AfiI CCNNNNNNNGG 7 cut(s) 494, 924, 983, 1454, 1598, 1858, 2437
AflII CTTAAG 1 cut(s) 596
AflIII ACRYGT 1 cut(s) 245
AgeI ACCGGT 1 cut(s) 997
AhlI ACTAGT 1 cut(s) 907
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 6 cut(s) 976, 1167, 1835, 2020, 2053, 2091
AleI CACNNNNGTG 1 cut(s) 2628
Alw21I GWGCWC 4 cut(s) 92, 756, 1183, 2178
Alw26I GTCTC 6 cut(s) 231, 646, 1202, 1983, 2278, 2530
Alw44I GTGCAC 1 cut(s) 752
AlwI GGATC 3 cut(s) 1096, 1332, 1568
AoxI GGCC 2 cut(s) 616, 915
ApaLI GTGCAC 1 cut(s) 752
ApeKI GCWGC 7 cut(s) 286, 428, 731, 1034, 1494, 2122, 2132
ApoI RAATTY 3 cut(s) 1132, 1708, 2552
ArsI GACNNNNNNTTYG 4 cut(s) 1693, 1725, 2081, 2113
AsiGI ACCGGT 1 cut(s) 997
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 2 cut(s) 260, 603
AspS9I GGNCC 2 cut(s) 497, 2089
AsuHPI GGTGA 5 cut(s) 463, 1437, 1509, 1778, 2040
AvaII GGWCC 2 cut(s) 497, 2089
BaeGI GKGCMC 1 cut(s) 756
BaeI ACNNNNGTAYC 4 cut(s) 1986, 2019, 2628, 2661
BalI TGGCCA 1 cut(s) 618
BanII GRGCYC 1 cut(s) 2178
BbsI GAAGAC 3 cut(s) 1110, 1938, 2585
Bbv12I GWGCWC 4 cut(s) 92, 756, 1183, 2178
BbvI GCAGC 7 cut(s) 298, 440, 743, 1046, 1506, 2109, 2119
BccI CCATC 7 cut(s) 262, 356, 764, 1591, 2194, 2416, 2602
BceAI ACGGC 2 cut(s) 1358, 1950
BcgI CGANNNNNNTGC 2 cut(s) 2146, 2180
BciT130I CCWGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
BcoDI GTCTC 6 cut(s) 231, 646, 1202, 1983, 2278, 2530
BcuI ACTAGT 1 cut(s) 907
BfaI CTAG 9 cut(s) 548, 908, 1071, 1110, 1158, 1215, 2037, 2079, 2507
BfmI CTRYAG 3 cut(s) 1032, 1389, 1995
BfrI CTTAAG 1 cut(s) 596
BfuAI ACCTGC 2 cut(s) 1138, 1396
BglII AGATCT 1 cut(s) 1277
BisI GCNGC 7 cut(s) 287, 429, 732, 1035, 1495, 2123, 2133
BlsI GCNGC 7 cut(s) 288, 430, 733, 1036, 1496, 2124, 2134
BmcAI AGTACT 1 cut(s) 1613
Bme1390I CCNGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
Bme18I GGWCC 2 cut(s) 497, 2089
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 497, 2089
BmiI GGNNCC 4 cut(s) 799, 1396, 1964, 2273
BmrFI CCNGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
BmrI ACTGGG 1 cut(s) 672
BmuI ACTGGG 1 cut(s) 672
BoxI GACNNNNGTC 1 cut(s) 2290
BpiI GAAGAC 3 cut(s) 1110, 1938, 2585
BpmI CTGGAG 1 cut(s) 2037
BpuEI CTTGAG 2 cut(s) 275, 700
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 3 cut(s) 231, 646, 1202
BsaJI CCNNGG 4 cut(s) 261, 977, 1167, 1168
BsaWI WCCGGW 1 cut(s) 997
BsaXI ACNNNNNCTCC 4 cut(s) 919, 949, 1386, 1416
Bsc4I CCNNNNNNNGG 7 cut(s) 494, 924, 983, 1454, 1598, 1858, 2437
Bse118I RCCGGY 1 cut(s) 997
Bse1I ACTGG 7 cut(s) 619, 667, 1366, 1581, 1641, 2149, 2544
Bse3DI GCAATG 1 cut(s) 850
BseBI CCWGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
BseDI CCNNGG 4 cut(s) 261, 977, 1167, 1168
BseGI GGATG 9 cut(s) 146, 367, 1009, 1054, 1081, 1720, 1882, 2383, 2633
BseLI CCNNNNNNNGG 7 cut(s) 494, 924, 983, 1454, 1598, 1858, 2437
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 9 cut(s) 893, 1197, 1282, 1728, 1807, 1972, 2163, 2270, 2516
BseNI ACTGG 7 cut(s) 619, 667, 1366, 1581, 1641, 2149, 2544
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 7 cut(s) 298, 440, 743, 1046, 1506, 2109, 2119
BseYI CCCAGC 1 cut(s) 1851
BsgI GTGCAG 1 cut(s) 1116
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 618, 917
BshTI ACCGGT 1 cut(s) 997
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 4 cut(s) 92, 756, 1183, 2178
BsiSI CCGG 1 cut(s) 998
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 7 cut(s) 494, 924, 983, 1454, 1598, 1858, 2437
BsmAI GTCTC 6 cut(s) 231, 646, 1202, 1983, 2278, 2530
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 2 cut(s) 618, 917
Bso31I GGTCTC 3 cut(s) 231, 646, 1202
Bsp1286I GDGCHC 4 cut(s) 92, 756, 1183, 2178
BspACI CCGC 5 cut(s) 137, 383, 472, 1479, 1886
BspANI GGCC 2 cut(s) 618, 917
BspCNI CTCAG 9 cut(s) 892, 1198, 1281, 1729, 1806, 1971, 2164, 2269, 2517
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 799, 1396, 1964, 2273
BspMAI CTGCAG 2 cut(s) 1036, 1393
BspMI ACCTGC 2 cut(s) 1138, 1396
BspPI GGATC 3 cut(s) 1096, 1332, 1568
BspQI GCTCTTC 2 cut(s) 582, 1108
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 3 cut(s) 231, 646, 1202
BsrDI GCAATG 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 997
BsrI ACTGG 7 cut(s) 619, 667, 1366, 1581, 1641, 2149, 2544
BssAI RCCGGY 1 cut(s) 997
BssECI CCNNGG 4 cut(s) 261, 977, 1167, 1168
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
Bst4CI ACNGT 6 cut(s) 437, 692, 758, 2105, 2244, 2424
Bst6I CTCTTC 5 cut(s) 190, 582, 1108, 1906, 2353
BstACI GRCGYC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 2500
BstEII GGTNACC 1 cut(s) 987
BstENI CCTNNNNNAGG 1 cut(s) 922
BstF5I GGATG 9 cut(s) 146, 367, 1009, 1054, 1081, 1720, 1882, 2383, 2633
BstHHI GCGC 2 cut(s) 260, 603
BstMAI GTCTC 6 cut(s) 231, 646, 1202, 1983, 2278, 2530
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 7 cut(s) 96, 122, 292, 306, 598, 1124, 2182
BstNI CCWGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
BstNSI RCATGY 3 cut(s) 680, 792, 2456
BstPAI GACNNNNGTC 1 cut(s) 2290
BstPI GGTNACC 1 cut(s) 987
BstSCI CCNGG 6 cut(s) 976, 1167, 1835, 2020, 2053, 2091
BstSFI CTRYAG 3 cut(s) 1032, 1389, 1995
BstSLI GKGCMC 1 cut(s) 756
BstV1I GCAGC 7 cut(s) 298, 440, 743, 1046, 1506, 2109, 2119
BstV2I GAAGAC 3 cut(s) 1110, 1938, 2585
BstX2I RGATCY 2 cut(s) 1088, 1277
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 2 cut(s) 1088, 1277
BsuRI GGCC 2 cut(s) 618, 917
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 9 cut(s) 146, 367, 1009, 1054, 1081, 1720, 1882, 2383, 2633
BtsI GCAGTG 2 cut(s) 450, 1792
BtsIMutI CAGTG 7 cut(s) 450, 519, 1251, 1588, 1792, 2142, 2449
BveI ACCTGC 2 cut(s) 1138, 1396
Cac8I GCNNGC 1 cut(s) 2500
CciI TCATGA 1 cut(s) 417
CfoI GCGC 2 cut(s) 260, 603
Cfr10I RCCGGY 1 cut(s) 997
Cfr13I GGNCC 2 cut(s) 497, 2089
CseI GACGC 1 cut(s) 962
Csp6I GTAC 8 cut(s) 654, 712, 1334, 1612, 1799, 2003, 2033, 2613
CspAI ACCGGT 1 cut(s) 997
CviQI GTAC 8 cut(s) 654, 712, 1334, 1612, 1799, 2003, 2033, 2613
DraI TTTAAA 2 cut(s) 1062, 1917
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 5 cut(s) 190, 582, 1108, 1906, 2353
EarI CTCTTC 5 cut(s) 190, 582, 1108, 1906, 2353
EciI GGCGGA 1 cut(s) 1875
Ecl136II GAGCTC 1 cut(s) 2176
Eco24I GRGCYC 1 cut(s) 2178
Eco31I GGTCTC 3 cut(s) 231, 646, 1202
Eco47I GGWCC 2 cut(s) 497, 2089
Eco53kI GAGCTC 1 cut(s) 2176
Eco57I CTGAAG 7 cut(s) 477, 522, 1311, 1647, 1743, 1974, 2317
Eco91I GGTNACC 1 cut(s) 987
EcoICRI GAGCTC 1 cut(s) 2176
EcoNI CCTNNNNNAGG 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 987
EcoRII CCWGG 6 cut(s) 976, 1167, 1835, 2020, 2053, 2091
EcoT22I ATGCAT 2 cut(s) 1821, 2454
EcoT38I GRGCYC 1 cut(s) 2178
FalI AAGNNNNNCTT 6 cut(s) 576, 608, 579, 611, 1120, 1152
FaqI GGGAC 1 cut(s) 620
FauI CCCGC 1 cut(s) 130
FauNDI CATATG 2 cut(s) 24, 2277
FblI GTMKAC 1 cut(s) 2426
Fnu4HI GCNGC 7 cut(s) 287, 429, 732, 1035, 1495, 2123, 2133
FokI GGATG 9 cut(s) 153, 374, 1016, 1041, 1088, 1727, 1869, 2370, 2640
FriOI GRGCYC 1 cut(s) 2178
Fsp4HI GCNGC 7 cut(s) 287, 429, 732, 1035, 1495, 2123, 2133
FspBI CTAG 9 cut(s) 548, 908, 1071, 1110, 1158, 1215, 2037, 2079, 2507
GlaI GCGC 2 cut(s) 259, 602
GluI GCNGC 7 cut(s) 287, 429, 732, 1035, 1495, 2123, 2133
GsaI CCCAGC 1 cut(s) 1855
GsuI CTGGAG 1 cut(s) 2037
HaeIII GGCC 2 cut(s) 618, 917
HapII CCGG 1 cut(s) 998
HgaI GACGC 1 cut(s) 962
HhaI GCGC 2 cut(s) 260, 603
Hin1I GRCGYC 1 cut(s) 231
Hin6I GCGC 2 cut(s) 258, 601
HinP1I GCGC 2 cut(s) 258, 601
HincII GTYRAC 1 cut(s) 2295
HindII GTYRAC 1 cut(s) 2295
HindIII AAGCTT 1 cut(s) 1986
HinfI GANTC 8 cut(s) 334, 544, 1106, 1862, 1925, 1943, 2113, 2581
HpaII CCGG 1 cut(s) 998
HphI GGTGA 5 cut(s) 463, 1437, 1509, 1778, 2040
Hpy166II GTNNAC 6 cut(s) 754, 938, 1163, 2089, 2295, 2427
Hpy8I GTNNAC 6 cut(s) 754, 938, 1163, 2089, 2295, 2427
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 9 cut(s) 352, 360, 365, 631, 1200, 1587, 1613, 1718, 2034
HpyCH4III ACNGT 6 cut(s) 437, 692, 758, 2105, 2244, 2424
HpyCH4IV ACGT 4 cut(s) 231, 245, 710, 1221
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 122, 292, 306, 598, 1124, 2182
HpySE526I ACGT 4 cut(s) 231, 245, 710, 1221
Hsp92I GRCGYC 1 cut(s) 231
HspAI GCGC 2 cut(s) 258, 601
LguI GCTCTTC 2 cut(s) 582, 1108
LmnI GCTCC 3 cut(s) 1394, 1962, 2277
Lsp1109I GCAGC 7 cut(s) 298, 440, 743, 1046, 1506, 2109, 2119
MaeI CTAG 9 cut(s) 548, 908, 1071, 1110, 1158, 1215, 2037, 2079, 2507
MaeII ACGT 4 cut(s) 231, 245, 710, 1221
MaeIII GTNAC 7 cut(s) 227, 451, 952, 987, 1217, 1587, 2147
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 2 cut(s) 1088, 1277
MhlI GDGCHC 4 cut(s) 92, 756, 1183, 2178
MlsI TGGCCA 1 cut(s) 618
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 3 cut(s) 1100, 1952, 2575
MmeI TCCRAC 3 cut(s) 214, 333, 562
Mox20I TGGCCA 1 cut(s) 618
Mph1103I ATGCAT 2 cut(s) 1821, 2454
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 618
MslI CAYNNNNRTG 2 cut(s) 422, 2628
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 2 cut(s) 385, 2132
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 998
MspR9I CCNGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
MwoI GCNNNNNNNGC 7 cut(s) 96, 122, 292, 306, 598, 1124, 2182
NdeI CATATG 2 cut(s) 24, 2277
NlaIV GGNNCC 4 cut(s) 799, 1396, 1964, 2273
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 3 cut(s) 227, 451, 1217
NsiI ATGCAT 2 cut(s) 1821, 2454
NspI RCATGY 3 cut(s) 680, 792, 2456
OliI CACNNNNGTG 1 cut(s) 2628
PagI TCATGA 1 cut(s) 417
PasI CCCWGGG 1 cut(s) 1168
PciSI GCTCTTC 2 cut(s) 582, 1108
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 5 cut(s) 334, 544, 1862, 1925, 2113
PflFI GACNNNGTC 1 cut(s) 1437
PinAI ACCGGT 1 cut(s) 997
PkrI GCNGC 7 cut(s) 288, 430, 733, 1036, 1496, 2124, 2134
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 3 cut(s) 1100, 1951, 2575
PpsI GAGTC 3 cut(s) 1100, 1951, 2575
PpuMI RGGWCCY 1 cut(s) 497
PshAI GACNNNNGTC 1 cut(s) 2290
PsiI TTATAA 1 cut(s) 1490
Psp124BI GAGCTC 1 cut(s) 2178
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 6 cut(s) 976, 1167, 1835, 2020, 2053, 2091
PspEI GGTNACC 1 cut(s) 987
PspFI CCCAGC 1 cut(s) 1851
PspGI CCWGG 6 cut(s) 976, 1167, 1835, 2020, 2053, 2091
PspN4I GGNNCC 4 cut(s) 799, 1396, 1964, 2273
PspPI GGNCC 2 cut(s) 497, 2089
PspPPI RGGWCCY 1 cut(s) 497
PstI CTGCAG 2 cut(s) 1036, 1393
PsuI RGATCY 2 cut(s) 1088, 1277
PsyI GACNNNGTC 1 cut(s) 1437
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 2132
RsaI GTAC 8 cut(s) 655, 713, 1335, 1613, 1800, 2004, 2034, 2614
RsaNI GTAC 8 cut(s) 654, 712, 1334, 1612, 1799, 2003, 2033, 2613
RseI CAYNNNNRTG 2 cut(s) 422, 2628
SacI GAGCTC 1 cut(s) 2178
SapI GCTCTTC 2 cut(s) 582, 1108
SatI GCNGC 7 cut(s) 287, 429, 732, 1035, 1495, 2123, 2133
Sau96I GGNCC 2 cut(s) 497, 2089
SbfI CCTGCAGG 1 cut(s) 1393
ScaI AGTACT 1 cut(s) 1613
SchI GAGTC 3 cut(s) 1100, 1952, 2575
ScrFI CCNGG 6 cut(s) 978, 1169, 1837, 2022, 2055, 2093
SdaI CCTGCAGG 1 cut(s) 1393
SduI GDGCHC 4 cut(s) 92, 756, 1183, 2178
SfcI CTRYAG 3 cut(s) 1032, 1389, 1995
SgrAI CRCCGGYG 1 cut(s) 997
SinI GGWCC 2 cut(s) 497, 2089
SmiI ATTTAAAT 1 cut(s) 1917
SmiMI CAYNNNNRTG 2 cut(s) 422, 2628
SmlI CTYRAG 3 cut(s) 290, 596, 715
SmoI CTYRAG 3 cut(s) 290, 596, 715
SpeI ACTAGT 1 cut(s) 907
Sse8387I CCTGCAGG 1 cut(s) 1393
SsiI CCGC 5 cut(s) 137, 383, 472, 1479, 1886
SspI AATATT 2 cut(s) 1696, 2214
SspMI CTAG 9 cut(s) 548, 908, 1071, 1110, 1158, 1215, 2037, 2079, 2507
SstI GAGCTC 1 cut(s) 2178
StyD4I CCNGG 6 cut(s) 976, 1167, 1835, 2020, 2053, 2091
SwaI ATTTAAAT 1 cut(s) 1917
TaaI ACNGT 6 cut(s) 437, 692, 758, 2105, 2244, 2424
TaiI ACGT 4 cut(s) 234, 248, 713, 1224
TaqI TCGA 5 cut(s) 659, 736, 1465, 2166, 2584
TaqII GACCGA 1 cut(s) 293
TatI WGTACW 1 cut(s) 1611
TfiI GAWTC 5 cut(s) 334, 544, 1862, 1925, 2113
TscAI CASTG 7 cut(s) 450, 526, 1258, 1588, 1792, 2149, 2449
TseFI GTSAC 3 cut(s) 227, 451, 1217
TseI GCWGC 7 cut(s) 286, 428, 731, 1034, 1494, 2122, 2132
Tsp45I GTSAC 3 cut(s) 227, 451, 1217
TspDTI ATGAA 9 cut(s) 918, 1116, 1214, 1224, 1721, 1733, 1921, 2545, 2583
TspGWI ACGGA 2 cut(s) 556, 2640
TspRI CASTG 7 cut(s) 450, 526, 1258, 1588, 1792, 2149, 2449
Tth111I GACNNNGTC 1 cut(s) 1437
Vha464I CTTAAG 1 cut(s) 596
VneI GTGCAC 1 cut(s) 752
VpaK11BI GGWCC 2 cut(s) 497, 2089
XagI CCTNNNNNAGG 1 cut(s) 922
XapI RAATTY 3 cut(s) 1132, 1708, 2552
XbaI TCTAGA 1 cut(s) 1109
XceI RCATGY 3 cut(s) 680, 792, 2456
XmiI GTMKAC 1 cut(s) 2426
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 9 cut(s) 548, 908, 1071, 1110, 1158, 1215, 2037, 2079, 2507
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 1613
Zsp2I ATGCAT 2 cut(s) 1821, 2454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.